ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 5 cut(s) | 12, 67, 102, 108, 359 |
| AclWI | GGATC | 1 cut(s) | 101 |
| AcsI | RAATTY | 1 cut(s) | 171 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 131, 319 |
| AgsI | TTSAA | 1 cut(s) | 189 |
| AluBI | AGCT | 3 cut(s) | 59, 114, 254 |
| AluI | AGCT | 3 cut(s) | 59, 114, 254 |
| Alw26I | GTCTC | 2 cut(s) | 140, 344 |
| AlwI | GGATC | 1 cut(s) | 101 |
| AoxI | GGCC | 1 cut(s) | 19 |
| ApeKI | GCWGC | 3 cut(s) | 72, 239, 251 |
| ApoI | RAATTY | 1 cut(s) | 171 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 171, 216 |
| AspS9I | GGNCC | 1 cut(s) | 278 |
| AsuC2I | CCSGG | 1 cut(s) | 23 |
| AsuII | TTCGAA | 1 cut(s) | 175 |
| AvaII | GGWCC | 1 cut(s) | 278 |
| BbvI | GCAGC | 3 cut(s) | 59, 226, 263 |
| BccI | CCATC | 3 cut(s) | 45, 282, 329 |
| BcnI | CCSGG | 1 cut(s) | 23 |
| BcoDI | GTCTC | 2 cut(s) | 140, 344 |
| BisI | GCNGC | 3 cut(s) | 73, 240, 252 |
| BlsI | GCNGC | 3 cut(s) | 74, 241, 253 |
| Bme1390I | CCNGG | 1 cut(s) | 23 |
| Bme18I | GGWCC | 1 cut(s) | 278 |
| BmgT120I | GGNCC | 1 cut(s) | 278 |
| BmiI | GGNNCC | 2 cut(s) | 10, 279 |
| BmrFI | CCNGG | 1 cut(s) | 23 |
| Bpu14I | TTCGAA | 1 cut(s) | 175 |
| BpuMI | CCSGG | 1 cut(s) | 23 |
| BsaI | GGTCTC | 2 cut(s) | 140, 344 |
| BsaJI | CCNNGG | 1 cut(s) | 354 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 131, 319 |
| Bse1I | ACTGG | 1 cut(s) | 324 |
| Bse3DI | GCAATG | 1 cut(s) | 62 |
| BseDI | CCNNGG | 1 cut(s) | 354 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 131, 319 |
| BseMI | GCAATG | 1 cut(s) | 62 |
| BseMII | CTCAG | 2 cut(s) | 80, 150 |
| BseNI | ACTGG | 1 cut(s) | 324 |
| BseXI | GCAGC | 3 cut(s) | 59, 226, 263 |
| BseYI | CCCAGC | 1 cut(s) | 297 |
| BshFI | GGCC | 1 cut(s) | 21 |
| BsiSI | CCGG | 1 cut(s) | 22 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 131, 319 |
| BsmAI | GTCTC | 2 cut(s) | 140, 344 |
| BsnI | GGCC | 1 cut(s) | 21 |
| Bso31I | GGTCTC | 2 cut(s) | 140, 344 |
| Bsp119I | TTCGAA | 1 cut(s) | 175 |
| Bsp143I | GATC | 1 cut(s) | 93 |
| Bsp19I | CCATGG | 1 cut(s) | 354 |
| BspACI | CCGC | 5 cut(s) | 12, 67, 102, 108, 359 |
| BspANI | GGCC | 1 cut(s) | 21 |
| BspCNI | CTCAG | 2 cut(s) | 81, 151 |
| BspLI | GGNNCC | 2 cut(s) | 10, 279 |
| BspPI | GGATC | 1 cut(s) | 101 |
| BspT104I | TTCGAA | 1 cut(s) | 175 |
| BspTNI | GGTCTC | 2 cut(s) | 140, 344 |
| BsrDI | GCAATG | 1 cut(s) | 62 |
| BsrI | ACTGG | 1 cut(s) | 324 |
| BssECI | CCNNGG | 1 cut(s) | 354 |
| BssMI | GATC | 1 cut(s) | 93 |
| BssT1I | CCWWGG | 1 cut(s) | 354 |
| BstBI | TTCGAA | 1 cut(s) | 175 |
| BstC8I | GCNNGC | 1 cut(s) | 261 |
| BstDEI | CTNAG | 3 cut(s) | 89, 159, 326 |
| BstDSI | CCRYGG | 1 cut(s) | 354 |
| BstKTI | GATC | 1 cut(s) | 96 |
| BstMAI | GTCTC | 2 cut(s) | 140, 344 |
| BstMBI | GATC | 1 cut(s) | 93 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 81, 236, 248, 260 |
| BstSCI | CCNGG | 1 cut(s) | 21 |
| BstV1I | GCAGC | 3 cut(s) | 59, 226, 263 |
| BsuRI | GGCC | 1 cut(s) | 21 |
| BtgI | CCRYGG | 1 cut(s) | 354 |
| BtsIMutI | CAGTG | 2 cut(s) | 86, 317 |
| Cac8I | GCNNGC | 1 cut(s) | 261 |
| Cfr13I | GGNCC | 1 cut(s) | 278 |
| CviAII | CATG | 1 cut(s) | 355 |
| CviJI | RGCY | 9 cut(s) | 9, 21, 59, 114, 185, 239, 254, 293, 301 |
| CviKI_1 | RGCY | 9 cut(s) | 9, 21, 59, 114, 185, 239, 254, 293, 301 |
| DdeI | CTNAG | 3 cut(s) | 89, 159, 326 |
| DpnI | GATC | 1 cut(s) | 95 |
| DpnII | GATC | 1 cut(s) | 93 |
| Eco130I | CCWWGG | 1 cut(s) | 354 |
| Eco31I | GGTCTC | 2 cut(s) | 140, 344 |
| Eco47I | GGWCC | 1 cut(s) | 278 |
| EcoO109I | RGGNCCY | 1 cut(s) | 278 |
| EcoT14I | CCWWGG | 1 cut(s) | 354 |
| ErhI | CCWWGG | 1 cut(s) | 354 |
| FaeI | CATG | 1 cut(s) | 358 |
| FaiI | YATR | 1 cut(s) | 356 |
| FatI | CATG | 1 cut(s) | 354 |
| Fnu4HI | GCNGC | 3 cut(s) | 73, 240, 252 |
| Fsp4HI | GCNGC | 3 cut(s) | 73, 240, 252 |
| GluI | GCNGC | 3 cut(s) | 73, 240, 252 |
| GsaI | CCCAGC | 1 cut(s) | 301 |
| HaeIII | GGCC | 1 cut(s) | 21 |
| HapII | CCGG | 1 cut(s) | 22 |
| Hin1II | CATG | 1 cut(s) | 358 |
| HindIII | AAGCTT | 1 cut(s) | 112 |
| HinfI | GANTC | 2 cut(s) | 155, 217 |
| HpaII | CCGG | 1 cut(s) | 22 |
| Hpy188I | TCNGA | 2 cut(s) | 50, 160 |
| Hpy188III | TCNNGA | 1 cut(s) | 41 |
| HpyAV | CCTTC | 3 cut(s) | 135, 175, 318 |
| HpyCH4V | TGCA | 1 cut(s) | 251 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 81, 236, 248, 260 |
| HpyF3I | CTNAG | 3 cut(s) | 89, 159, 326 |
| Hsp92II | CATG | 1 cut(s) | 358 |
| Kzo9I | GATC | 1 cut(s) | 93 |
| LmnI | GCTCC | 1 cut(s) | 14 |
| LpnPI | CCDG | 6 cut(s) | 26, 35, 94, 305, 311, 358 |
| Lsp1109I | GCAGC | 3 cut(s) | 59, 226, 263 |
| MaeIII | GTNAC | 1 cut(s) | 146 |
| MalI | GATC | 1 cut(s) | 95 |
| MboI | GATC | 1 cut(s) | 93 |
| MboII | GAAGA | 1 cut(s) | 176 |
| MluCI | AATT | 1 cut(s) | 171 |
| MnlI | CCTC | 5 cut(s) | 84, 154, 190, 355, 360 |
| MroXI | GAANNNNTTC | 2 cut(s) | 171, 216 |
| MslI | CAYNNNNRTG | 1 cut(s) | 67 |
| MspI | CCGG | 1 cut(s) | 22 |
| MspR9I | CCNGG | 1 cut(s) | 23 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 81, 236, 248, 260 |
| NciI | CCSGG | 1 cut(s) | 23 |
| NcoI | CCATGG | 1 cut(s) | 354 |
| NdeII | GATC | 1 cut(s) | 93 |
| NlaIII | CATG | 1 cut(s) | 358 |
| NlaIV | GGNNCC | 2 cut(s) | 10, 279 |
| NmuCI | GTSAC | 1 cut(s) | 146 |
| NspV | TTCGAA | 1 cut(s) | 175 |
| PdmI | GAANNNNTTC | 2 cut(s) | 171, 216 |
| PfeI | GAWTC | 2 cut(s) | 155, 217 |
| PkrI | GCNGC | 3 cut(s) | 74, 241, 253 |
| PpuMI | RGGWCCY | 1 cut(s) | 278 |
| Psp5II | RGGWCCY | 1 cut(s) | 278 |
| PspFI | CCCAGC | 1 cut(s) | 297 |
| PspN4I | GGNNCC | 2 cut(s) | 10, 279 |
| PspPI | GGNCC | 1 cut(s) | 278 |
| PspPPI | RGGWCCY | 1 cut(s) | 278 |
| RseI | CAYNNNNRTG | 1 cut(s) | 67 |
| SatI | GCNGC | 3 cut(s) | 73, 240, 252 |
| Sau3AI | GATC | 1 cut(s) | 93 |
| Sau96I | GGNCC | 1 cut(s) | 278 |
| ScrFI | CCNGG | 1 cut(s) | 23 |
| SetI | ASST | 4 cut(s) | 61, 116, 256, 310 |
| SfuI | TTCGAA | 1 cut(s) | 175 |
| SinI | GGWCC | 1 cut(s) | 278 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 67 |
| Sse9I | AATT | 1 cut(s) | 171 |
| SsiI | CCGC | 5 cut(s) | 12, 67, 102, 108, 359 |
| StyD4I | CCNGG | 1 cut(s) | 21 |
| StyI | CCWWGG | 1 cut(s) | 354 |
| TaqI | TCGA | 1 cut(s) | 175 |
| TasI | AATT | 1 cut(s) | 171 |
| TfiI | GAWTC | 2 cut(s) | 155, 217 |
| TscAI | CASTG | 2 cut(s) | 93, 324 |
| TseFI | GTSAC | 1 cut(s) | 146 |
| TseI | GCWGC | 3 cut(s) | 72, 239, 251 |
| Tsp45I | GTSAC | 1 cut(s) | 146 |
| TspDTI | ATGAA | 2 cut(s) | 51, 168 |
| TspRI | CASTG | 2 cut(s) | 93, 324 |
| VpaK11BI | GGWCC | 1 cut(s) | 278 |
| XapI | RAATTY | 1 cut(s) | 171 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 271 |
| XmnI | GAANNNNTTC | 2 cut(s) | 171, 216 |