Reverse transcriptase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 30 - 98 | 1.4e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 166 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 249, 304 |
| AflIII | ACRYGT | 1 cut(s) | 43 |
| AgsI | TTSAA | 3 cut(s) | 103, 157, 364 |
| AjnI | CCWGG | 2 cut(s) | 54, 242 |
| AluBI | AGCT | 1 cut(s) | 236 |
| AluI | AGCT | 1 cut(s) | 236 |
| Ama87I | CYCGRG | 3 cut(s) | 28, 111, 303 |
| AoxI | GGCC | 2 cut(s) | 335, 373 |
| ApeKI | GCWGC | 1 cut(s) | 275 |
| AseI | ATTAAT | 1 cut(s) | 393 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 227 |
| AspS9I | GGNCC | 1 cut(s) | 336 |
| AsuHPI | GGTGA | 3 cut(s) | 15, 127, 139 |
| AsuII | TTCGAA | 1 cut(s) | 134 |
| AvaI | CYCGRG | 3 cut(s) | 28, 111, 303 |
| BbvI | GCAGC | 1 cut(s) | 287 |
| BccI | CCATC | 1 cut(s) | 365 |
| BciT130I | CCWGG | 2 cut(s) | 56, 244 |
| BclI | TGATCA | 1 cut(s) | 216 |
| BisI | GCNGC | 1 cut(s) | 276 |
| BlsI | GCNGC | 1 cut(s) | 277 |
| Bme1390I | CCNGG | 2 cut(s) | 56, 244 |
| BmeT110I | CYCGRG | 3 cut(s) | 28, 111, 303 |
| BmgT120I | GGNCC | 1 cut(s) | 336 |
| BmiI | GGNNCC | 1 cut(s) | 255 |
| BmrFI | CCNGG | 2 cut(s) | 56, 244 |
| Bpu14I | TTCGAA | 1 cut(s) | 134 |
| BsaJI | CCNNGG | 2 cut(s) | 27, 110 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 249, 304 |
| BseBI | CCWGG | 2 cut(s) | 56, 244 |
| BseDI | CCNNGG | 2 cut(s) | 27, 110 |
| BseGI | GGATG | 1 cut(s) | 376 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 249, 304 |
| BseXI | GCAGC | 1 cut(s) | 287 |
| BshFI | GGCC | 2 cut(s) | 337, 375 |
| BsiHKCI | CYCGRG | 3 cut(s) | 28, 111, 303 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 249, 304 |
| BsnI | GGCC | 2 cut(s) | 337, 375 |
| BsoBI | CYCGRG | 3 cut(s) | 28, 111, 303 |
| Bsp119I | TTCGAA | 1 cut(s) | 134 |
| Bsp143I | GATC | 3 cut(s) | 120, 216, 260 |
| BspANI | GGCC | 2 cut(s) | 337, 375 |
| BspLI | GGNNCC | 1 cut(s) | 255 |
| BspT104I | TTCGAA | 1 cut(s) | 134 |
| BssECI | CCNNGG | 2 cut(s) | 27, 110 |
| BssMI | GATC | 3 cut(s) | 120, 216, 260 |
| Bst2UI | CCWGG | 2 cut(s) | 56, 244 |
| Bst4CI | ACNGT | 1 cut(s) | 169 |
| BstBI | TTCGAA | 1 cut(s) | 134 |
| BstC8I | GCNNGC | 1 cut(s) | 238 |
| BstDEI | CTNAG | 1 cut(s) | 200 |
| BstF5I | GGATG | 1 cut(s) | 376 |
| BstKTI | GATC | 3 cut(s) | 123, 219, 263 |
| BstMBI | GATC | 3 cut(s) | 120, 216, 260 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 89, 381 |
| BstNI | CCWGG | 2 cut(s) | 56, 244 |
| BstNSI | RCATGY | 2 cut(s) | 8, 47 |
| BstSCI | CCNGG | 2 cut(s) | 54, 242 |
| BstV1I | GCAGC | 1 cut(s) | 287 |
| BsuRI | GGCC | 2 cut(s) | 337, 375 |
| BtgZI | GCGATG | 1 cut(s) | 160 |
| BtsCI | GGATG | 1 cut(s) | 376 |
| Cac8I | GCNNGC | 1 cut(s) | 238 |
| Cfr13I | GGNCC | 1 cut(s) | 336 |
| Csp6I | GTAC | 1 cut(s) | 165 |
| CviAII | CATG | 2 cut(s) | 5, 44 |
| CviJI | RGCY | 4 cut(s) | 17, 236, 337, 375 |
| CviKI_1 | RGCY | 4 cut(s) | 17, 236, 337, 375 |
| CviQI | GTAC | 1 cut(s) | 165 |
| DdeI | CTNAG | 1 cut(s) | 200 |
| DpnI | GATC | 3 cut(s) | 122, 218, 262 |
| DpnII | GATC | 3 cut(s) | 120, 216, 260 |
| Eco32I | GATATC | 1 cut(s) | 70 |
| Eco88I | CYCGRG | 3 cut(s) | 28, 111, 303 |
| EcoO109I | RGGNCCY | 1 cut(s) | 336 |
| EcoRII | CCWGG | 2 cut(s) | 54, 242 |
| EcoRV | GATATC | 1 cut(s) | 70 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 2 cut(s) | 8, 47 |
| FaiI | YATR | 4 cut(s) | 6, 45, 61, 63 |
| FatI | CATG | 2 cut(s) | 4, 43 |
| FbaI | TGATCA | 1 cut(s) | 216 |
| Fnu4HI | GCNGC | 1 cut(s) | 276 |
| FokI | GGATG | 1 cut(s) | 383 |
| Fsp4HI | GCNGC | 1 cut(s) | 276 |
| GluI | GCNGC | 1 cut(s) | 276 |
| HaeIII | GGCC | 2 cut(s) | 337, 375 |
| Hin1II | CATG | 2 cut(s) | 8, 47 |
| HincII | GTYRAC | 1 cut(s) | 41 |
| HindII | GTYRAC | 1 cut(s) | 41 |
| HindIII | AAGCTT | 1 cut(s) | 234 |
| HinfI | GANTC | 4 cut(s) | 103, 125, 131, 357 |
| HphI | GGTGA | 3 cut(s) | 15, 127, 139 |
| Hpy166II | GTNNAC | 2 cut(s) | 41, 172 |
| Hpy188I | TCNGA | 2 cut(s) | 130, 390 |
| Hpy188III | TCNNGA | 3 cut(s) | 220, 305, 361 |
| Hpy8I | GTNNAC | 2 cut(s) | 41, 172 |
| HpyAV | CCTTC | 1 cut(s) | 395 |
| HpyCH4III | ACNGT | 1 cut(s) | 169 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 275 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 89, 381 |
| HpyF3I | CTNAG | 1 cut(s) | 200 |
| Hsp92II | CATG | 2 cut(s) | 8, 47 |
| Ksp22I | TGATCA | 1 cut(s) | 216 |
| Kzo9I | GATC | 3 cut(s) | 120, 216, 260 |
| LmnI | GCTCC | 1 cut(s) | 245 |
| LpnPI | CCDG | 7 cut(s) | 41, 68, 74, 163, 205, 229, 256 |
| Lsp1109I | GCAGC | 1 cut(s) | 287 |
| MaeIII | GTNAC | 1 cut(s) | 21 |
| MalI | GATC | 3 cut(s) | 122, 218, 262 |
| MboI | GATC | 3 cut(s) | 120, 216, 260 |
| MboII | GAAGA | 2 cut(s) | 181, 336 |
| MfeI | CAATTG | 1 cut(s) | 98 |
| MluCI | AATT | 2 cut(s) | 98, 394 |
| MlyI | GAGTC | 1 cut(s) | 134 |
| MnlI | CCTC | 3 cut(s) | 37, 120, 349 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 227 |
| MseI | TTAA | 3 cut(s) | 9, 330, 393 |
| MspR9I | CCNGG | 2 cut(s) | 56, 244 |
| MunI | CAATTG | 1 cut(s) | 98 |
| MvaI | CCWGG | 2 cut(s) | 56, 244 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 89, 381 |
| NdeII | GATC | 3 cut(s) | 120, 216, 260 |
| NlaIII | CATG | 2 cut(s) | 8, 47 |
| NlaIV | GGNNCC | 1 cut(s) | 255 |
| NmuCI | GTSAC | 1 cut(s) | 21 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 2 cut(s) | 8, 47 |
| NspV | TTCGAA | 1 cut(s) | 134 |
| PciI | ACATGT | 1 cut(s) | 43 |
| PdmI | GAANNNNTTC | 1 cut(s) | 227 |
| PfeI | GAWTC | 3 cut(s) | 103, 131, 357 |
| PkrI | GCNGC | 1 cut(s) | 277 |
| PleI | GAGTC | 1 cut(s) | 133 |
| PpsI | GAGTC | 1 cut(s) | 133 |
| PscI | ACATGT | 1 cut(s) | 43 |
| PshBI | ATTAAT | 1 cut(s) | 393 |
| Psp6I | CCWGG | 2 cut(s) | 54, 242 |
| PspGI | CCWGG | 2 cut(s) | 54, 242 |
| PspN4I | GGNNCC | 1 cut(s) | 255 |
| PspPI | GGNCC | 1 cut(s) | 336 |
| RsaI | GTAC | 1 cut(s) | 166 |
| RsaNI | GTAC | 1 cut(s) | 165 |
| SaqAI | TTAA | 3 cut(s) | 9, 330, 393 |
| SatI | GCNGC | 1 cut(s) | 276 |
| Sau3AI | GATC | 3 cut(s) | 120, 216, 260 |
| Sau96I | GGNCC | 1 cut(s) | 336 |
| SchI | GAGTC | 1 cut(s) | 134 |
| ScrFI | CCNGG | 2 cut(s) | 56, 244 |
| SetI | ASST | 5 cut(s) | 112, 152, 229, 238, 382 |
| SfuI | TTCGAA | 1 cut(s) | 134 |
| Sse9I | AATT | 2 cut(s) | 98, 394 |
| StyD4I | CCNGG | 2 cut(s) | 54, 242 |
| TaaI | ACNGT | 1 cut(s) | 169 |
| TaqI | TCGA | 3 cut(s) | 123, 134, 293 |
| TasI | AATT | 2 cut(s) | 98, 394 |
| TatI | WGTACW | 1 cut(s) | 164 |
| TfiI | GAWTC | 3 cut(s) | 103, 131, 357 |
| Tru1I | TTAA | 3 cut(s) | 9, 330, 393 |
| Tru9I | TTAA | 3 cut(s) | 9, 330, 393 |
| TseFI | GTSAC | 1 cut(s) | 21 |
| TseI | GCWGC | 1 cut(s) | 275 |
| Tsp45I | GTSAC | 1 cut(s) | 21 |
| VspI | ATTAAT | 1 cut(s) | 393 |
| XceI | RCATGY | 2 cut(s) | 8, 47 |
| XmnI | GAANNNNTTC | 1 cut(s) | 227 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |