ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 340 |
| AccI | GTMKAC | 1 cut(s) | 344 |
| AciI | CCGC | 2 cut(s) | 512, 760 |
| AclWI | GGATC | 4 cut(s) | 143, 156, 710, 718 |
| AcoI | YGGCCR | 2 cut(s) | 226, 737 |
| AcsI | RAATTY | 1 cut(s) | 384 |
| AcuI | CTGAAG | 1 cut(s) | 482 |
| AdeI | CACNNNGTG | 1 cut(s) | 325 |
| AgsI | TTSAA | 2 cut(s) | 485, 590 |
| AjnI | CCWGG | 2 cut(s) | 211, 505 |
| AleI | CACNNNNGTG | 1 cut(s) | 647 |
| AluBI | AGCT | 4 cut(s) | 60, 296, 731, 748 |
| AluI | AGCT | 4 cut(s) | 60, 296, 731, 748 |
| AlwI | GGATC | 4 cut(s) | 143, 156, 710, 718 |
| AoxI | GGCC | 3 cut(s) | 209, 226, 737 |
| ApeKI | GCWGC | 3 cut(s) | 615, 704, 757 |
| ApoI | RAATTY | 1 cut(s) | 384 |
| AseI | ATTAAT | 1 cut(s) | 552 |
| AspS9I | GGNCC | 1 cut(s) | 82 |
| AsuC2I | CCSGG | 1 cut(s) | 523 |
| AsuHPI | GGTGA | 3 cut(s) | 88, 191, 634 |
| AvaII | GGWCC | 1 cut(s) | 82 |
| BaeGI | GKGCMC | 2 cut(s) | 455, 523 |
| BalI | TGGCCA | 2 cut(s) | 228, 739 |
| BamHI | GGATCC | 1 cut(s) | 148 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 33 |
| BbvI | GCAGC | 3 cut(s) | 602, 691, 744 |
| BccI | CCATC | 3 cut(s) | 187, 412, 572 |
| BciT130I | CCWGG | 2 cut(s) | 213, 507 |
| BciVI | GTATCC | 1 cut(s) | 91 |
| BclI | TGATCA | 1 cut(s) | 123 |
| BcnI | CCSGG | 1 cut(s) | 523 |
| BfaI | CTAG | 1 cut(s) | 102 |
| BfuI | GTATCC | 1 cut(s) | 91 |
| BglII | AGATCT | 1 cut(s) | 11 |
| BisI | GCNGC | 3 cut(s) | 616, 705, 758 |
| BlsI | GCNGC | 3 cut(s) | 617, 706, 759 |
| Bme1390I | CCNGG | 3 cut(s) | 213, 507, 523 |
| Bme18I | GGWCC | 1 cut(s) | 82 |
| BmgT120I | GGNCC | 1 cut(s) | 82 |
| BmiI | GGNNCC | 1 cut(s) | 150 |
| BmrFI | CCNGG | 3 cut(s) | 213, 507, 523 |
| BmrI | ACTGGG | 1 cut(s) | 103 |
| BmuI | ACTGGG | 1 cut(s) | 103 |
| BpuEI | CTTGAG | 1 cut(s) | 46 |
| BpuMI | CCSGG | 1 cut(s) | 523 |
| BsaJI | CCNNGG | 2 cut(s) | 25, 212 |
| Bse1I | ACTGG | 1 cut(s) | 98 |
| BseBI | CCWGG | 2 cut(s) | 213, 507 |
| BseDI | CCNNGG | 2 cut(s) | 25, 212 |
| BseGI | GGATG | 1 cut(s) | 336 |
| BseMII | CTCAG | 1 cut(s) | 249 |
| BseNI | ACTGG | 1 cut(s) | 98 |
| BseRI | GAGGAG | 2 cut(s) | 647, 650 |
| BseSI | GKGCMC | 2 cut(s) | 455, 523 |
| BseXI | GCAGC | 3 cut(s) | 602, 691, 744 |
| BshFI | GGCC | 3 cut(s) | 211, 228, 739 |
| BsiSI | CCGG | 1 cut(s) | 523 |
| BslFI | GGGAC | 1 cut(s) | 229 |
| BsmFI | GGGAC | 1 cut(s) | 229 |
| BsnI | GGCC | 3 cut(s) | 211, 228, 739 |
| Bsp1286I | GDGCHC | 2 cut(s) | 455, 523 |
| Bsp143I | GATC | 5 cut(s) | 11, 123, 148, 715, 723 |
| Bsp19I | CCATGG | 1 cut(s) | 25 |
| BspACI | CCGC | 2 cut(s) | 512, 760 |
| BspANI | GGCC | 3 cut(s) | 211, 228, 739 |
| BspCNI | CTCAG | 1 cut(s) | 248 |
| BspHI | TCATGA | 1 cut(s) | 603 |
| BspLI | GGNNCC | 1 cut(s) | 150 |
| BspPI | GGATC | 4 cut(s) | 143, 156, 710, 718 |
| BsrI | ACTGG | 1 cut(s) | 98 |
| BssECI | CCNNGG | 2 cut(s) | 25, 212 |
| BssMI | GATC | 5 cut(s) | 11, 123, 148, 715, 723 |
| BssT1I | CCWWGG | 1 cut(s) | 25 |
| Bst2UI | CCWGG | 2 cut(s) | 213, 507 |
| Bst4CI | ACNGT | 1 cut(s) | 337 |
| Bst6I | CTCTTC | 1 cut(s) | 445 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 43 |
| BstC8I | GCNNGC | 2 cut(s) | 278, 294 |
| BstDEI | CTNAG | 3 cut(s) | 235, 360, 474 |
| BstDSI | CCRYGG | 1 cut(s) | 25 |
| BstEII | GGTNACC | 1 cut(s) | 179 |
| BstF5I | GGATG | 1 cut(s) | 336 |
| BstKTI | GATC | 5 cut(s) | 14, 126, 151, 718, 726 |
| BstMBI | GATC | 5 cut(s) | 11, 123, 148, 715, 723 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 43, 518, 527, 686, 745, 754 |
| BstNI | CCWGG | 2 cut(s) | 213, 507 |
| BstPI | GGTNACC | 1 cut(s) | 179 |
| BstSCI | CCNGG | 3 cut(s) | 211, 505, 521 |
| BstSLI | GKGCMC | 2 cut(s) | 455, 523 |
| BstV1I | GCAGC | 3 cut(s) | 602, 691, 744 |
| BstX2I | RGATCY | 2 cut(s) | 11, 148 |
| BstYI | RGATCY | 2 cut(s) | 11, 148 |
| BsuI | GTATCC | 1 cut(s) | 91 |
| BsuRI | GGCC | 3 cut(s) | 211, 228, 739 |
| BtgI | CCRYGG | 1 cut(s) | 25 |
| BtsCI | GGATG | 1 cut(s) | 336 |
| BtsIMutI | CAGTG | 3 cut(s) | 133, 243, 506 |
| Cac8I | GCNNGC | 2 cut(s) | 278, 294 |
| CciI | TCATGA | 1 cut(s) | 603 |
| Cfr13I | GGNCC | 1 cut(s) | 82 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 716, 751 |
| CviAII | CATG | 3 cut(s) | 26, 604, 753 |
| DdeI | CTNAG | 3 cut(s) | 235, 360, 474 |
| DpnI | GATC | 5 cut(s) | 13, 125, 150, 717, 725 |
| DpnII | GATC | 5 cut(s) | 11, 123, 148, 715, 723 |
| DraIII | CACNNNGTG | 1 cut(s) | 325 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 340 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 340 |
| EaeI | YGGCCR | 2 cut(s) | 226, 737 |
| Eam1104I | CTCTTC | 1 cut(s) | 445 |
| EarI | CTCTTC | 1 cut(s) | 445 |
| Eco130I | CCWWGG | 1 cut(s) | 25 |
| Eco47I | GGWCC | 1 cut(s) | 82 |
| Eco57I | CTGAAG | 1 cut(s) | 482 |
| Eco91I | GGTNACC | 1 cut(s) | 179 |
| EcoO109I | RGGNCCY | 1 cut(s) | 82 |
| EcoO65I | GGTNACC | 1 cut(s) | 179 |
| EcoRII | CCWGG | 2 cut(s) | 211, 505 |
| EcoT14I | CCWWGG | 1 cut(s) | 25 |
| ErhI | CCWWGG | 1 cut(s) | 25 |
| FaeI | CATG | 3 cut(s) | 29, 607, 756 |
| FaqI | GGGAC | 1 cut(s) | 229 |
| FatI | CATG | 3 cut(s) | 25, 603, 752 |
| FauNDI | CATATG | 1 cut(s) | 72 |
| FbaI | TGATCA | 1 cut(s) | 123 |
| FblI | GTMKAC | 1 cut(s) | 344 |
| Fnu4HI | GCNGC | 3 cut(s) | 616, 705, 758 |
| FokI | GGATG | 1 cut(s) | 343 |
| Fsp4HI | GCNGC | 3 cut(s) | 616, 705, 758 |
| FspBI | CTAG | 1 cut(s) | 102 |
| GluI | GCNGC | 3 cut(s) | 616, 705, 758 |
| HaeIII | GGCC | 3 cut(s) | 211, 228, 739 |
| HapII | CCGG | 1 cut(s) | 523 |
| Hin1II | CATG | 3 cut(s) | 29, 607, 756 |
| HindIII | AAGCTT | 1 cut(s) | 729 |
| HinfI | GANTC | 2 cut(s) | 316, 364 |
| HpaII | CCGG | 1 cut(s) | 523 |
| HphI | GGTGA | 3 cut(s) | 88, 191, 634 |
| Hpy166II | GTNNAC | 1 cut(s) | 345 |
| Hpy188III | TCNNGA | 2 cut(s) | 63, 604 |
| Hpy8I | GTNNAC | 1 cut(s) | 345 |
| HpyAV | CCTTC | 2 cut(s) | 73, 420 |
| HpyCH4III | ACNGT | 1 cut(s) | 337 |
| HpyCH4V | TGCA | 3 cut(s) | 37, 276, 618 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 43, 518, 527, 686, 745, 754 |
| HpyF3I | CTNAG | 3 cut(s) | 235, 360, 474 |
| Hsp92II | CATG | 3 cut(s) | 29, 607, 756 |
| Ksp22I | TGATCA | 1 cut(s) | 123 |
| Kzo9I | GATC | 5 cut(s) | 11, 123, 148, 715, 723 |
| LmnI | GCTCC | 1 cut(s) | 712 |
| Lsp1109I | GCAGC | 3 cut(s) | 602, 691, 744 |
| MaeI | CTAG | 1 cut(s) | 102 |
| MaeIII | GTNAC | 2 cut(s) | 128, 179 |
| MalI | GATC | 5 cut(s) | 13, 125, 150, 717, 725 |
| MboI | GATC | 5 cut(s) | 11, 123, 148, 715, 723 |
| MboII | GAAGA | 4 cut(s) | 124, 410, 432, 488 |
| MflI | RGATCY | 2 cut(s) | 11, 148 |
| MhlI | GDGCHC | 2 cut(s) | 455, 523 |
| MlsI | TGGCCA | 2 cut(s) | 228, 739 |
| MluCI | AATT | 7 cut(s) | 87, 168, 370, 384, 553, 624, 670 |
| MluNI | TGGCCA | 2 cut(s) | 228, 739 |
| MmeI | TCCRAC | 1 cut(s) | 89 |
| MnlI | CCTC | 7 cut(s) | 78, 139, 234, 541, 625, 671, 694 |
| Mox20I | TGGCCA | 2 cut(s) | 228, 739 |
| MscI | TGGCCA | 2 cut(s) | 228, 739 |
| MseI | TTAA | 3 cut(s) | 167, 552, 627 |
| MslI | CAYNNNNRTG | 1 cut(s) | 647 |
| Msp20I | TGGCCA | 2 cut(s) | 228, 739 |
| MspI | CCGG | 1 cut(s) | 523 |
| MspR9I | CCNGG | 3 cut(s) | 213, 507, 523 |
| MvaI | CCWGG | 2 cut(s) | 213, 507 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 43, 518, 527, 686, 745, 754 |
| NciI | CCSGG | 1 cut(s) | 523 |
| NcoI | CCATGG | 1 cut(s) | 25 |
| NdeI | CATATG | 1 cut(s) | 72 |
| NdeII | GATC | 5 cut(s) | 11, 123, 148, 715, 723 |
| NlaIII | CATG | 3 cut(s) | 29, 607, 756 |
| NlaIV | GGNNCC | 1 cut(s) | 150 |
| NmuCI | GTSAC | 2 cut(s) | 128, 179 |
| OliI | CACNNNNGTG | 1 cut(s) | 647 |
| PagI | TCATGA | 1 cut(s) | 603 |
| PfeI | GAWTC | 2 cut(s) | 316, 364 |
| PkrI | GCNGC | 3 cut(s) | 617, 706, 759 |
| PpuMI | RGGWCCY | 1 cut(s) | 82 |
| PshBI | ATTAAT | 1 cut(s) | 552 |
| Psp5II | RGGWCCY | 1 cut(s) | 82 |
| Psp6I | CCWGG | 2 cut(s) | 211, 505 |
| PspEI | GGTNACC | 1 cut(s) | 179 |
| PspGI | CCWGG | 2 cut(s) | 211, 505 |
| PspN4I | GGNNCC | 1 cut(s) | 150 |
| PspPI | GGNCC | 1 cut(s) | 82 |
| PspPPI | RGGWCCY | 1 cut(s) | 82 |
| PsuI | RGATCY | 2 cut(s) | 11, 148 |
| RseI | CAYNNNNRTG | 1 cut(s) | 647 |
| SaqAI | TTAA | 3 cut(s) | 167, 552, 627 |
| SatI | GCNGC | 3 cut(s) | 616, 705, 758 |
| Sau3AI | GATC | 5 cut(s) | 11, 123, 148, 715, 723 |
| Sau96I | GGNCC | 1 cut(s) | 82 |
| ScrFI | CCNGG | 3 cut(s) | 213, 507, 523 |
| SduI | GDGCHC | 2 cut(s) | 455, 523 |
| SinI | GGWCC | 1 cut(s) | 82 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 647 |
| SmlI | CTYRAG | 1 cut(s) | 61 |
| SmoI | CTYRAG | 1 cut(s) | 61 |
| Sse9I | AATT | 7 cut(s) | 87, 168, 370, 384, 553, 624, 670 |
| SsiI | CCGC | 2 cut(s) | 512, 760 |
| SspMI | CTAG | 1 cut(s) | 102 |
| StyD4I | CCNGG | 3 cut(s) | 211, 505, 521 |
| StyI | CCWWGG | 1 cut(s) | 25 |
| TaaI | ACNGT | 1 cut(s) | 337 |
| TasI | AATT | 7 cut(s) | 87, 168, 370, 384, 553, 624, 670 |
| TfiI | GAWTC | 2 cut(s) | 316, 364 |
| Tru1I | TTAA | 3 cut(s) | 167, 552, 627 |
| Tru9I | TTAA | 3 cut(s) | 167, 552, 627 |
| TscAI | CASTG | 3 cut(s) | 133, 243, 506 |
| TseFI | GTSAC | 2 cut(s) | 128, 179 |
| TseI | GCWGC | 3 cut(s) | 615, 704, 757 |
| Tsp45I | GTSAC | 2 cut(s) | 128, 179 |
| TspDTI | ATGAA | 3 cut(s) | 247, 291, 329 |
| TspRI | CASTG | 3 cut(s) | 133, 243, 506 |
| VpaK11BI | GGWCC | 1 cut(s) | 82 |
| VspI | ATTAAT | 1 cut(s) | 552 |
| XapI | RAATTY | 1 cut(s) | 384 |
| XmiI | GTMKAC | 1 cut(s) | 344 |
| XspI | CTAG | 1 cut(s) | 102 |