Rmu_sc0040890.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040890.1
OG0000093
Physical Location & Seq
Reverse (-)
238 .. 537
300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040890.1_g000001.1.cds

Sequence Viewer

Length: 300 bp
ctgaggaaggttcattttgaatcagatgctaaagaggtagtattggatctaaaagaattaggtcggggaaagaattggaaaacctacccaatactgatacgcattcgaaagctagcaactggttttgaggagtgcaaatgggactgggttccccgtgaggcgaacatggctgcgcattgtgcggcatcgcttgccaatgggacggtgggtccactgagatgggctgaccagccaccaccatccctaaccttggttctaagaaatgacggcctcccttgtcccccggcgacggagatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

99

Amino Acids

11.11

Weight (kDa)

8.56

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 174
AciI CCGC 1 cut(s) 182
AclWI GGATC 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 250, 289
AgsI TTSAA 1 cut(s) 20
AhdI GACNNNNNGTC 1 cut(s) 207
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AlwI GGATC 1 cut(s) 54
AoxI GGCC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 175
AspS9I GGNCC 1 cut(s) 209
AsuC2I CCSGG 1 cut(s) 284
AsuII TTCGAA 1 cut(s) 106
AsuNHI GCTAGC 1 cut(s) 112
AvaII GGWCC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 157
BccI CCATC 2 cut(s) 213, 247
BceAI ACGGC 1 cut(s) 283
BcnI CCSGG 1 cut(s) 284
BfaI CTAG 1 cut(s) 113
BisI GCNGC 2 cut(s) 171, 183
BlsI GCNGC 2 cut(s) 172, 184
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 1 cut(s) 209
BmeRI GACNNNNNGTC 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 2 cut(s) 150, 210
BmrFI CCNGG 1 cut(s) 284
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 2 cut(s) 16, 194
BmtI GCTAGC 1 cut(s) 116
BmuI ACTGGG 1 cut(s) 154
Bpu14I TTCGAA 1 cut(s) 106
BpuMI CCSGG 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 249, 282
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 289
Bse1I ACTGG 2 cut(s) 124, 149
BseDI CCNNGG 2 cut(s) 249, 282
BseGI GGATG 1 cut(s) 239
BseLI CCNNNNNNNGG 2 cut(s) 250, 289
BseMII CTCAG 1 cut(s) 206
BseNI ACTGG 2 cut(s) 124, 149
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 1 cut(s) 157
BshFI GGCC 1 cut(s) 270
BsiSI CCGG 1 cut(s) 284
BslFI GGGAC 3 cut(s) 155, 214, 264
BslI CCNNNNNNNGG 2 cut(s) 250, 289
BsmFI GGGAC 3 cut(s) 155, 214, 264
BsmI GAATGC 1 cut(s) 102
BsnI GGCC 1 cut(s) 270
Bsp119I TTCGAA 1 cut(s) 106
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 270
BspCNI CTCAG 1 cut(s) 207
BspLI GGNNCC 2 cut(s) 150, 210
BspOI GCTAGC 1 cut(s) 116
BspPI GGATC 1 cut(s) 54
BspT104I TTCGAA 1 cut(s) 106
BsrI ACTGG 2 cut(s) 124, 149
BssECI CCNNGG 2 cut(s) 249, 282
BssMI GATC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 205
BstAPI GCANNNNNTGC 1 cut(s) 191
BstBI TTCGAA 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 114, 192
BstDEI CTNAG 3 cut(s) 2, 215, 257
BstF5I GGATG 1 cut(s) 239
BstHHI GCGC 1 cut(s) 175
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 3 cut(s) 167, 179, 191
BstSCI CCNGG 1 cut(s) 282
BstV1I GCAGC 1 cut(s) 157
BstX2I RGATCY 1 cut(s) 46
BstXI CCANNNNNNTGG 1 cut(s) 219
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 1 cut(s) 270
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 114, 192
CfoI GCGC 1 cut(s) 175
Cfr13I GGNCC 1 cut(s) 209
CviAII CATG 1 cut(s) 166
CviJI RGCY 5 cut(s) 112, 170, 224, 232, 270
CviKI_1 RGCY 5 cut(s) 112, 170, 224, 232, 270
DdeI CTNAG 3 cut(s) 2, 215, 257
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DriI GACNNNNNGTC 1 cut(s) 207
Eam1105I GACNNNNNGTC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 1 cut(s) 169
FaiI YATR 1 cut(s) 167
FaqI GGGAC 3 cut(s) 155, 214, 264
FatI CATG 1 cut(s) 165
Fnu4HI GCNGC 2 cut(s) 171, 183
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 2 cut(s) 171, 183
FspBI CTAG 1 cut(s) 113
FspI TGCGCA 1 cut(s) 174
GlaI GCGC 1 cut(s) 174
GluI GCNGC 2 cut(s) 171, 183
HaeIII GGCC 1 cut(s) 270
HapII CCGG 1 cut(s) 284
HhaI GCGC 1 cut(s) 175
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 1 cut(s) 173
HinP1I GCGC 1 cut(s) 173
HinfI GANTC 1 cut(s) 20
HpaII CCGG 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 25
Hpy8I GTNNAC 1 cut(s) 212
Hpy99I CGWCG 1 cut(s) 292
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 179, 191
HpyF3I CTNAG 3 cut(s) 2, 215, 257
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 1 cut(s) 173
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 3 cut(s) 105, 130, 242
Lsp1109I GCAGC 1 cut(s) 157
LweI GCATC 2 cut(s) 16, 194
MaeI CTAG 1 cut(s) 113
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MflI RGATCY 1 cut(s) 46
MluCI AATT 2 cut(s) 56, 73
MnlI CCTC 4 cut(s) 28, 121, 151, 281
MslI CAYNNNNRTG 1 cut(s) 217
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 284
Mva1269I GAATGC 1 cut(s) 102
MwoI GCNNNNNNNGC 3 cut(s) 167, 179, 191
NciI CCSGG 1 cut(s) 284
NdeII GATC 1 cut(s) 46
NheI GCTAGC 1 cut(s) 112
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 2 cut(s) 150, 210
NsbI TGCGCA 1 cut(s) 174
NspV TTCGAA 1 cut(s) 106
PctI GAATGC 1 cut(s) 102
PfeI GAWTC 1 cut(s) 20
PkrI GCNGC 2 cut(s) 172, 184
PspN4I GGNNCC 2 cut(s) 150, 210
PspPI GGNCC 1 cut(s) 209
PsuI RGATCY 1 cut(s) 46
RseI CAYNNNNRTG 1 cut(s) 217
SatI GCNGC 2 cut(s) 171, 183
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 1 cut(s) 209
ScrFI CCNGG 1 cut(s) 284
SetI ASST 6 cut(s) 12, 39, 64, 86, 114, 251
SfaNI GCATC 2 cut(s) 16, 194
SfuI TTCGAA 1 cut(s) 106
SinI GGWCC 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 217
Sse9I AATT 2 cut(s) 56, 73
SsiI CCGC 1 cut(s) 182
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 106
TasI AATT 2 cut(s) 56, 73
TauI GCSGC 1 cut(s) 185
TfiI GAWTC 1 cut(s) 20
TscAI CASTG 1 cut(s) 219
TseI GCWGC 1 cut(s) 170
TspRI CASTG 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.