Rorug03G0200400

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000093
Physical Location & Seq
Forward (+)
17671801 .. 17674282
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0200400.1

Sequence Viewer

Length: 1323 bp
ATGAGAATGGAACCCAAGAGTAAGTTAGTGGCTACTGCAAGTTTTGGTGAAGGTAGAGGAGGTTGTATTGTGAATGAGAACAAGAAAGACAGGCTTAGTAATCTTCCGGACGAAATCGTGCACCACATTCTTTCGTCCTCACTTAAAACACCTATCCTTGATATAGAGGACCTCACTATGTTCAGCTGTGTGTCCAAAAGATGCAGACAACTTGTCCTGTCAAACCCGACTTTGCGTTTTGATGGATTTCAGAGGACTAGAATATCCACCTGTAGTAAACGGTCAAAGTTGATGAATTCTTTCGATAGGCTGTTGGCTTGCCGCGGGGATTGTAAGTTACAGGTCTTTGATGTATCATGGTATTCACACTATTCATGGACAACACCATGCTTCTGTGAAGATAACAAATTTCGAGTATTCACTTGGATATACAATGTTCTAGATAGGTATAAGGTTGAAACGCTTCATGTTTTTATCGAACAAGGCTTACTAGATGATGATGACATATTACCTGCATTTCCATCCTACATCTTTCATTGTGACTCCTTGAGGTCTCTGAAGGTGGACGTAAATTGTATGATTCAAGCACCCTCCTTTGCTTTTTCTTCAAATCTCAGATCCTTGGTATTGACAAGTGTTACTATAGTAGATGAGGAGTTTTTCCAATGGATCTCATGCTGCTGCAAGTTCATTGAGGATTTATGTCTGGATTCTGTTTATGGGCCAAAAAATGTCACCATTGAAAGCTCATCTTTAGAGTTATTTCACTTTAAGTGTGCTGCTAATAGTAGGATATGCCATCTTCACATCTCAGGTGAGAAGCTTAAAGAAATAGCTGTGGACTGGAGTTTTAATCCGTATAGGAAAATATCATTTGGTATTCTTGCTCCGAATCTTAAAAGATACAGGTGGACTGGGAATTTGATAAATCACCCAAATCTGGGAAATTTAGTATCTCTAGAAGAAGCTGAGATTCGTCTGAAGCCTATATTGGATGGCTGGGACAATGTACTTGAGATTCTTTGCAGATTACGTGGTGTTAAAGTTGTTCTTTTAACTGAAGAGGTCACTAAGACATCGGGGTTTAATATGGGACACTGGAAGCTGCAAGACCCTGCTCTTTTCAATCAGCTTAAGGAGTTTACAATAGAGCTCTGGGGAGAACCTAATGGAATTGAACTAGCGAGGTATATTCTGGAGCATTCTCAGAATTTGGAGAAAATGGTCATTGTTCACCTGCCGCAACATTCTCATGTTAAAAGGGAGTTGAGTAAAAGCAAGACGATTTCAAATGCCAAGCTTTTCTTCAGTACATATACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

440

Amino Acids

50.7

Weight (kDa)

7.83

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 171 - 258 1.8e-07 FBD-associated F-box protein At5g56370, LRR repeats
FBD PF08387 377 - 410 4.9e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1245
Acc36I ACCTGC 2 cut(s) 520, 1245
AccII CGCG 1 cut(s) 324
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 3 cut(s) 322, 324, 1241
AclWI GGATC 2 cut(s) 612, 677
AcsI RAATTY 5 cut(s) 295, 407, 919, 946, 1210
AcuI CTGAAG 4 cut(s) 578, 1001, 1080, 1291
AfaI GTAC 2 cut(s) 1011, 1312
AfiI CCNNNNNNNGG 2 cut(s) 940, 941
AflII CTTAAG 1 cut(s) 1133
AgsI TTSAA 7 cut(s) 458, 584, 609, 743, 1126, 1178, 1290
AhdI GACNNNNNGTC 1 cut(s) 212
AjuI GAANNNNNNNTTGG 4 cut(s) 974, 1006, 1289, 1321
AluBI AGCT 9 cut(s) 186, 747, 823, 836, 968, 1105, 1132, 1153, 1300
AluI AGCT 9 cut(s) 186, 747, 823, 836, 968, 1105, 1132, 1153, 1300
Alw21I GWGCWC 2 cut(s) 123, 1155
Alw26I GTCTC 1 cut(s) 558
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 2 cut(s) 612, 677
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 1 cut(s) 722
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 4 cut(s) 678, 681, 779, 1105
ApoI RAATTY 5 cut(s) 295, 407, 919, 946, 1210
ArsI GACNNNNNNTTYG 2 cut(s) 904, 936
Asp700I GAANNNNTTC 2 cut(s) 299, 462
AspS9I GGNCC 2 cut(s) 169, 722
AsuHPI GGTGA 5 cut(s) 59, 727, 827, 923, 1226
AvaII GGWCC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 123
BanII GRGCYC 1 cut(s) 1155
Bbv12I GWGCWC 2 cut(s) 123, 1155
BbvI GCAGC 4 cut(s) 665, 668, 766, 1092
BccI CCATC 4 cut(s) 236, 529, 807, 989
BcoDI GTCTC 1 cut(s) 558
BfaI CTAG 5 cut(s) 258, 440, 491, 959, 1181
BfmI CTRYAG 2 cut(s) 271, 642
BfrI CTTAAG 1 cut(s) 1133
BfuAI ACCTGC 2 cut(s) 520, 1245
BisI GCNGC 6 cut(s) 322, 679, 682, 780, 1106, 1241
BlsI GCNGC 6 cut(s) 323, 680, 683, 781, 1107, 1242
Bme18I GGWCC 1 cut(s) 169
BmeRI GACNNNNNGTC 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 169, 722
BmiI GGNNCC 1 cut(s) 12
BmrI ACTGGG 1 cut(s) 924
BmsI GCATC 1 cut(s) 191
BmuI ACTGGG 1 cut(s) 924
BpmI CTGGAG 2 cut(s) 865, 1217
BpuEI CTTGAG 2 cut(s) 568, 1034
BsaAI YACGTR 1 cut(s) 1034
BsaI GGTCTC 1 cut(s) 558
BsaJI CCNNGG 2 cut(s) 322, 621
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 2 cut(s) 940, 941
Bse1I ACTGG 3 cut(s) 848, 919, 1103
BseAI TCCGGA 1 cut(s) 106
BseDI CCNNGG 2 cut(s) 322, 621
BseGI GGATG 2 cut(s) 521, 1000
BseLI CCNNNNNNNGG 2 cut(s) 940, 941
BseMII CTCAG 4 cut(s) 628, 825, 960, 1220
BseNI ACTGG 3 cut(s) 848, 919, 1103
BseRI GAGGAG 2 cut(s) 72, 668
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 4 cut(s) 665, 668, 766, 1092
BseYI CCCAGC 1 cut(s) 999
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 1 cut(s) 724
BsiHKAI GWGCWC 2 cut(s) 123, 1155
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 2 cut(s) 1016, 1107
BslI CCNNNNNNNGG 2 cut(s) 940, 941
BsmAI GTCTC 1 cut(s) 558
BsmFI GGGAC 2 cut(s) 1016, 1107
BsmI GAATGC 1 cut(s) 1201
BsnI GGCC 1 cut(s) 724
Bso31I GGTCTC 1 cut(s) 558
Bsp1286I GDGCHC 2 cut(s) 123, 1155
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 2 cut(s) 617, 669
BspACI CCGC 3 cut(s) 322, 324, 1241
BspANI GGCC 1 cut(s) 724
BspCNI CTCAG 4 cut(s) 627, 824, 961, 1219
BspEI TCCGGA 1 cut(s) 106
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 1 cut(s) 12
BspMI ACCTGC 2 cut(s) 520, 1245
BspPI GGATC 2 cut(s) 612, 677
BspTI CTTAAG 1 cut(s) 1133
BspTNI GGTCTC 1 cut(s) 558
BsrI ACTGG 3 cut(s) 848, 919, 1103
BssECI CCNNGG 2 cut(s) 322, 621
BssMI GATC 2 cut(s) 617, 669
BssT1I CCWWGG 1 cut(s) 621
Bst4CI ACNGT 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 1056
BstAFI CTTAAG 1 cut(s) 1133
BstBAI YACGTR 1 cut(s) 1034
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 6 cut(s) 95, 614, 811, 969, 1071, 1206
BstDSI CCRYGG 1 cut(s) 322
BstF5I GGATG 2 cut(s) 521, 1000
BstFNI CGCG 1 cut(s) 324
BstKTI GATC 2 cut(s) 620, 672
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 2 cut(s) 617, 669
BstSFI CTRYAG 2 cut(s) 271, 642
BstSLI GKGCMC 1 cut(s) 123
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 4 cut(s) 665, 668, 766, 1092
BstX2I RGATCY 2 cut(s) 617, 669
BstYI RGATCY 2 cut(s) 617, 669
BsuRI GGCC 1 cut(s) 724
BtgI CCRYGG 1 cut(s) 322
BtsCI GGATG 2 cut(s) 521, 1000
BtsIMutI CAGTG 1 cut(s) 1096
BveI ACCTGC 2 cut(s) 520, 1245
Cac8I GCNNGC 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 169, 722
Cfr42I CCGCGG 1 cut(s) 325
Csp6I GTAC 2 cut(s) 1010, 1311
CviAII CATG 6 cut(s) 357, 375, 387, 467, 675, 1253
CviQI GTAC 2 cut(s) 1010, 1311
DdeI CTNAG 6 cut(s) 95, 614, 811, 969, 1071, 1206
DpnI GATC 2 cut(s) 619, 671
DpnII GATC 2 cut(s) 617, 669
DriI GACNNNNNGTC 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 1056
Eam1105I GACNNNNNGTC 1 cut(s) 212
EarI CTCTTC 1 cut(s) 1056
Ecl136II GAGCTC 1 cut(s) 1153
Eco130I CCWWGG 1 cut(s) 621
Eco24I GRGCYC 1 cut(s) 1155
Eco31I GGTCTC 1 cut(s) 558
Eco47I GGWCC 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 1153
Eco57I CTGAAG 4 cut(s) 578, 1001, 1080, 1291
EcoICRI GAGCTC 1 cut(s) 1153
EcoO109I RGGNCCY 1 cut(s) 169
EcoRI GAATTC 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 621
EcoT38I GRGCYC 1 cut(s) 1155
ErhI CCWWGG 1 cut(s) 621
FaeI CATG 6 cut(s) 360, 378, 390, 470, 678, 1256
FalI AAGNNNNNCTT 8 cut(s) 78, 110, 736, 768, 1035, 1067, 1289, 1321
FaqI GGGAC 2 cut(s) 1016, 1107
FatI CATG 6 cut(s) 356, 374, 386, 466, 674, 1252
FauI CCCGC 1 cut(s) 317
Fnu4HI GCNGC 6 cut(s) 322, 679, 682, 780, 1106, 1241
FokI GGATG 2 cut(s) 508, 1007
FriOI GRGCYC 1 cut(s) 1155
Fsp4HI GCNGC 6 cut(s) 322, 679, 682, 780, 1106, 1241
FspBI CTAG 5 cut(s) 258, 440, 491, 959, 1181
GluI GCNGC 6 cut(s) 322, 679, 682, 780, 1106, 1241
GsaI CCCAGC 1 cut(s) 1003
GsuI CTGGAG 2 cut(s) 865, 1217
HaeIII GGCC 1 cut(s) 724
HapII CCGG 1 cut(s) 107
Hin1II CATG 6 cut(s) 360, 378, 390, 470, 678, 1256
HindIII AAGCTT 2 cut(s) 821, 1298
HinfI GANTC 6 cut(s) 542, 580, 710, 892, 973, 1018
HpaII CCGG 1 cut(s) 107
HphI GGTGA 5 cut(s) 59, 727, 827, 923, 1226
Hpy166II GTNNAC 7 cut(s) 121, 278, 565, 841, 912, 1143, 1234
Hpy188I TCNGA 6 cut(s) 252, 558, 617, 891, 981, 1209
Hpy188III TCNNGA 5 cut(s) 107, 440, 707, 959, 1196
Hpy8I GTNNAC 7 cut(s) 121, 278, 565, 841, 912, 1143, 1234
HpyAV CCTTC 2 cut(s) 44, 553
HpyCH4III ACNGT 1 cut(s) 282
HpyCH4IV ACGT 2 cut(s) 567, 1033
HpyCH4V TGCA 7 cut(s) 38, 121, 204, 515, 684, 1026, 1108
HpyF3I CTNAG 6 cut(s) 95, 614, 811, 969, 1071, 1206
HpySE526I ACGT 2 cut(s) 567, 1033
Hsp92II CATG 6 cut(s) 360, 378, 390, 470, 678, 1256
Kpn2I TCCGGA 1 cut(s) 106
KspI CCGCGG 1 cut(s) 325
Kzo9I GATC 2 cut(s) 617, 669
LmnI GCTCC 2 cut(s) 892, 1198
Lsp1109I GCAGC 4 cut(s) 665, 668, 766, 1092
LweI GCATC 1 cut(s) 191
MaeI CTAG 5 cut(s) 258, 440, 491, 959, 1181
MaeII ACGT 2 cut(s) 567, 1033
MaeIII GTNAC 5 cut(s) 336, 539, 637, 733, 1066
MalI GATC 2 cut(s) 619, 671
MboI GATC 2 cut(s) 617, 669
MboII GAAGA 7 cut(s) 95, 410, 597, 794, 974, 1073, 1297
MflI RGATCY 2 cut(s) 617, 669
MhlI GDGCHC 2 cut(s) 123, 1155
MluCI AATT 7 cut(s) 295, 407, 571, 919, 946, 1173, 1210
MlyI GAGTC 1 cut(s) 536
MroI TCCGGA 1 cut(s) 106
MroXI GAANNNNTTC 2 cut(s) 299, 462
MslI CAYNNNNRTG 1 cut(s) 1251
MspA1I CMGCKG 2 cut(s) 186, 324
MspCI CTTAAG 1 cut(s) 1133
MspI CCGG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 1201
MvnI CGCG 1 cut(s) 324
NdeII GATC 2 cut(s) 617, 669
NlaIII CATG 6 cut(s) 360, 378, 390, 470, 678, 1256
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 3 cut(s) 539, 733, 1066
PaqCI CACCTGC 1 cut(s) 1245
PctI GAATGC 1 cut(s) 1201
PdmI GAANNNNTTC 2 cut(s) 299, 462
PfeI GAWTC 5 cut(s) 580, 710, 892, 973, 1018
PkrI GCNGC 6 cut(s) 323, 680, 683, 781, 1107, 1242
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
Ppu21I YACGTR 1 cut(s) 1034
PpuMI RGGWCCY 1 cut(s) 169
Psp124BI GAGCTC 1 cut(s) 1155
Psp5II RGGWCCY 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 999
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 2 cut(s) 169, 722
PspPPI RGGWCCY 1 cut(s) 169
PsrI GAACNNNNNNTAC 2 cut(s) 471, 503
PsuI RGATCY 2 cut(s) 617, 669
PvuII CAGCTG 1 cut(s) 186
RsaI GTAC 2 cut(s) 1011, 1312
RsaNI GTAC 2 cut(s) 1010, 1311
RseI CAYNNNNRTG 1 cut(s) 1251
SacI GAGCTC 1 cut(s) 1155
SacII CCGCGG 1 cut(s) 325
SatI GCNGC 6 cut(s) 322, 679, 682, 780, 1106, 1241
Sau3AI GATC 2 cut(s) 617, 669
Sau96I GGNCC 2 cut(s) 169, 722
SchI GAGTC 1 cut(s) 536
SduI GDGCHC 2 cut(s) 123, 1155
SfaNI GCATC 1 cut(s) 191
SfcI CTRYAG 2 cut(s) 271, 642
Sfr303I CCGCGG 1 cut(s) 325
SgrBI CCGCGG 1 cut(s) 325
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 1251
SmlI CTYRAG 3 cut(s) 547, 1013, 1133
SmoI CTYRAG 3 cut(s) 547, 1013, 1133
Sse9I AATT 7 cut(s) 295, 407, 571, 919, 946, 1173, 1210
SsiI CCGC 3 cut(s) 322, 324, 1241
SspMI CTAG 5 cut(s) 258, 440, 491, 959, 1181
SstI GAGCTC 1 cut(s) 1155
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 1 cut(s) 282
TaiI ACGT 2 cut(s) 570, 1036
TaqI TCGA 3 cut(s) 303, 412, 477
TasI AATT 7 cut(s) 295, 407, 571, 919, 946, 1173, 1210
TatI WGTACW 2 cut(s) 1009, 1310
TauI GCSGC 2 cut(s) 324, 1243
TfiI GAWTC 5 cut(s) 580, 710, 892, 973, 1018
TscAI CASTG 1 cut(s) 1103
TseFI GTSAC 3 cut(s) 539, 733, 1066
TseI GCWGC 4 cut(s) 678, 681, 779, 1105
Tsp45I GTSAC 3 cut(s) 539, 733, 1066
TspDTI ATGAA 5 cut(s) 308, 363, 455, 524, 679
TspGWI ACGGA 1 cut(s) 846
TspRI CASTG 1 cut(s) 1103
Vha464I CTTAAG 1 cut(s) 1133
VneI GTGCAC 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 5 cut(s) 295, 407, 919, 946, 1210
XbaI TCTAGA 2 cut(s) 439, 958
XmnI GAANNNNTTC 2 cut(s) 299, 462
XspI CTAG 5 cut(s) 258, 440, 491, 959, 1181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.