ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 55 - 130 | 2.4e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 313 |
| AclWI | GGATC | 1 cut(s) | 271 |
| AcsI | RAATTY | 3 cut(s) | 76, 326, 334 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 129 |
| AgsI | TTSAA | 3 cut(s) | 81, 290, 334 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 39, 71 |
| AluBI | AGCT | 3 cut(s) | 245, 251, 293 |
| AluI | AGCT | 3 cut(s) | 245, 251, 293 |
| Alw21I | GWGCWC | 1 cut(s) | 385 |
| Alw26I | GTCTC | 1 cut(s) | 260 |
| AlwI | GGATC | 1 cut(s) | 271 |
| ApeKI | GCWGC | 1 cut(s) | 133 |
| ApoI | RAATTY | 3 cut(s) | 76, 326, 334 |
| AsuHPI | GGTGA | 3 cut(s) | 40, 71, 385 |
| Bbv12I | GWGCWC | 1 cut(s) | 385 |
| BbvCI | CCTCAGC | 1 cut(s) | 294 |
| BbvI | GCAGC | 1 cut(s) | 145 |
| BccI | CCATC | 3 cut(s) | 132, 164, 313 |
| BcoDI | GTCTC | 1 cut(s) | 260 |
| BfaI | CTAG | 3 cut(s) | 189, 242, 252 |
| BfmI | CTRYAG | 2 cut(s) | 314, 364 |
| BisI | GCNGC | 1 cut(s) | 134 |
| BlsI | GCNGC | 1 cut(s) | 135 |
| BmiI | GGNNCC | 1 cut(s) | 224 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 240, 272 |
| BpmI | CTGGAG | 2 cut(s) | 267, 374 |
| Bpu10I | CCTNAGC | 1 cut(s) | 294 |
| BsaJI | CCNNGG | 1 cut(s) | 259 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 129 |
| Bse3DI | GCAATG | 1 cut(s) | 109 |
| BseDI | CCNNGG | 1 cut(s) | 259 |
| BseGI | GGATG | 2 cut(s) | 175, 187 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BseMI | GCAATG | 1 cut(s) | 109 |
| BseMII | CTCAG | 2 cut(s) | 285, 288 |
| BseXI | GCAGC | 1 cut(s) | 145 |
| BsiHKAI | GWGCWC | 1 cut(s) | 385 |
| BslFI | GGGAC | 1 cut(s) | 246 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 129 |
| BsmAI | GTCTC | 1 cut(s) | 260 |
| BsmFI | GGGAC | 1 cut(s) | 246 |
| BsmI | GAATGC | 1 cut(s) | 53 |
| Bsp1286I | GDGCHC | 1 cut(s) | 385 |
| Bsp143I | GATC | 1 cut(s) | 263 |
| Bsp19I | CCATGG | 1 cut(s) | 259 |
| BspCNI | CTCAG | 2 cut(s) | 286, 287 |
| BspHI | TCATGA | 1 cut(s) | 303 |
| BspLI | GGNNCC | 1 cut(s) | 224 |
| BspPI | GGATC | 1 cut(s) | 271 |
| BsrDI | GCAATG | 1 cut(s) | 109 |
| BssECI | CCNNGG | 1 cut(s) | 259 |
| BssMI | GATC | 1 cut(s) | 263 |
| BssT1I | CCWWGG | 1 cut(s) | 259 |
| Bst4CI | ACNGT | 3 cut(s) | 145, 365, 392 |
| BstDEI | CTNAG | 2 cut(s) | 274, 294 |
| BstDSI | CCRYGG | 1 cut(s) | 259 |
| BstF5I | GGATG | 2 cut(s) | 175, 187 |
| BstKTI | GATC | 1 cut(s) | 266 |
| BstMAI | GTCTC | 1 cut(s) | 260 |
| BstMBI | GATC | 1 cut(s) | 263 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 113 |
| BstSFI | CTRYAG | 2 cut(s) | 314, 364 |
| BstV1I | GCAGC | 1 cut(s) | 145 |
| BstX2I | RGATCY | 1 cut(s) | 263 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 25 |
| BstYI | RGATCY | 1 cut(s) | 263 |
| BtgI | CCRYGG | 1 cut(s) | 259 |
| BtsCI | GGATG | 2 cut(s) | 175, 187 |
| BtsIMutI | CAGTG | 1 cut(s) | 141 |
| CciI | TCATGA | 1 cut(s) | 303 |
| CviAII | CATG | 2 cut(s) | 260, 304 |
| CviJI | RGCY | 5 cut(s) | 136, 188, 245, 251, 293 |
| CviKI_1 | RGCY | 5 cut(s) | 136, 188, 245, 251, 293 |
| DdeI | CTNAG | 2 cut(s) | 274, 294 |
| DpnI | GATC | 1 cut(s) | 265 |
| DpnII | GATC | 1 cut(s) | 263 |
| Eco130I | CCWWGG | 1 cut(s) | 259 |
| EcoRI | GAATTC | 1 cut(s) | 326 |
| EcoT14I | CCWWGG | 1 cut(s) | 259 |
| ErhI | CCWWGG | 1 cut(s) | 259 |
| FaeI | CATG | 2 cut(s) | 263, 307 |
| FaiI | YATR | 6 cut(s) | 44, 195, 228, 261, 270, 305 |
| FaqI | GGGAC | 1 cut(s) | 246 |
| FatI | CATG | 2 cut(s) | 259, 303 |
| FblI | GTMKAC | 1 cut(s) | 313 |
| Fnu4HI | GCNGC | 1 cut(s) | 134 |
| FokI | GGATG | 2 cut(s) | 182, 194 |
| Fsp4HI | GCNGC | 1 cut(s) | 134 |
| FspBI | CTAG | 3 cut(s) | 189, 242, 252 |
| GluI | GCNGC | 1 cut(s) | 134 |
| GsuI | CTGGAG | 2 cut(s) | 267, 374 |
| Hin1II | CATG | 2 cut(s) | 263, 307 |
| HinfI | GANTC | 3 cut(s) | 109, 210, 376 |
| HphI | GGTGA | 3 cut(s) | 40, 71, 385 |
| Hpy166II | GTNNAC | 1 cut(s) | 314 |
| Hpy188I | TCNGA | 1 cut(s) | 341 |
| Hpy188III | TCNNGA | 6 cut(s) | 81, 220, 304, 331, 353, 386 |
| Hpy8I | GTNNAC | 1 cut(s) | 314 |
| HpyAV | CCTTC | 1 cut(s) | 301 |
| HpyCH4III | ACNGT | 3 cut(s) | 145, 365, 392 |
| HpyCH4V | TGCA | 1 cut(s) | 51 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 113 |
| HpyF3I | CTNAG | 2 cut(s) | 274, 294 |
| Hsp92II | CATG | 2 cut(s) | 263, 307 |
| Kzo9I | GATC | 1 cut(s) | 263 |
| LmnI | GCTCC | 2 cut(s) | 173, 248 |
| LpnPI | CCDG | 7 cut(s) | 11, 110, 115, 126, 205, 231, 338 |
| Lsp1109I | GCAGC | 1 cut(s) | 145 |
| MaeI | CTAG | 3 cut(s) | 189, 242, 252 |
| MaeIII | GTNAC | 3 cut(s) | 5, 28, 359 |
| MalI | GATC | 1 cut(s) | 265 |
| MboI | GATC | 1 cut(s) | 263 |
| MboII | GAAGA | 1 cut(s) | 111 |
| MflI | RGATCY | 1 cut(s) | 263 |
| MhlI | GDGCHC | 1 cut(s) | 385 |
| MluCI | AATT | 3 cut(s) | 76, 326, 334 |
| MlyI | GAGTC | 1 cut(s) | 219 |
| MnlI | CCTC | 6 cut(s) | 33, 103, 148, 178, 289, 364 |
| MseI | TTAA | 1 cut(s) | 156 |
| MslI | CAYNNNNRTG | 1 cut(s) | 198 |
| Mva1269I | GAATGC | 1 cut(s) | 53 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 113 |
| NcoI | CCATGG | 1 cut(s) | 259 |
| NdeII | GATC | 1 cut(s) | 263 |
| NlaIII | CATG | 2 cut(s) | 263, 307 |
| NlaIV | GGNNCC | 1 cut(s) | 224 |
| NmuCI | GTSAC | 3 cut(s) | 5, 28, 359 |
| PagI | TCATGA | 1 cut(s) | 303 |
| PctI | GAATGC | 1 cut(s) | 53 |
| PfeI | GAWTC | 2 cut(s) | 109, 376 |
| PkrI | GCNGC | 1 cut(s) | 135 |
| PleI | GAGTC | 1 cut(s) | 218 |
| PpsI | GAGTC | 1 cut(s) | 218 |
| PspN4I | GGNNCC | 1 cut(s) | 224 |
| PsuI | RGATCY | 1 cut(s) | 263 |
| RseI | CAYNNNNRTG | 1 cut(s) | 198 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| SatI | GCNGC | 1 cut(s) | 134 |
| Sau3AI | GATC | 1 cut(s) | 263 |
| SchI | GAGTC | 1 cut(s) | 219 |
| SduI | GDGCHC | 1 cut(s) | 385 |
| SetI | ASST | 4 cut(s) | 247, 253, 295, 375 |
| SfcI | CTRYAG | 2 cut(s) | 314, 364 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 198 |
| Sse9I | AATT | 3 cut(s) | 76, 326, 334 |
| SspMI | CTAG | 3 cut(s) | 189, 242, 252 |
| StyI | CCWWGG | 1 cut(s) | 259 |
| TaaI | ACNGT | 3 cut(s) | 145, 365, 392 |
| TasI | AATT | 3 cut(s) | 76, 326, 334 |
| TfiI | GAWTC | 2 cut(s) | 109, 376 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TscAI | CASTG | 1 cut(s) | 148 |
| TseFI | GTSAC | 3 cut(s) | 5, 28, 359 |
| TseI | GCWGC | 1 cut(s) | 133 |
| Tsp45I | GTSAC | 3 cut(s) | 5, 28, 359 |
| TspDTI | ATGAA | 2 cut(s) | 84, 320 |
| TspRI | CASTG | 1 cut(s) | 148 |
| XapI | RAATTY | 3 cut(s) | 76, 326, 334 |
| XmiI | GTMKAC | 1 cut(s) | 313 |
| XspI | CTAG | 3 cut(s) | 189, 242, 252 |