ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 77 - 198 | 9.1e-24 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 658 |
| AccI | GTMKAC | 2 cut(s) | 234, 248 |
| AciI | CCGC | 1 cut(s) | 18 |
| AclWI | GGATC | 1 cut(s) | 643 |
| AcoI | YGGCCR | 1 cut(s) | 585 |
| AcsI | RAATTY | 1 cut(s) | 337 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 658 |
| AgsI | TTSAA | 6 cut(s) | 83, 97, 223, 350, 356, 382 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 630 |
| AjnI | CCWGG | 1 cut(s) | 587 |
| AleI | CACNNNNGTG | 1 cut(s) | 110 |
| AluBI | AGCT | 6 cut(s) | 86, 255, 439, 534, 563, 596 |
| AluI | AGCT | 6 cut(s) | 86, 255, 439, 534, 563, 596 |
| Alw21I | GWGCWC | 1 cut(s) | 614 |
| Alw44I | GTGCAC | 1 cut(s) | 610 |
| AlwI | GGATC | 1 cut(s) | 643 |
| AoxI | GGCC | 1 cut(s) | 585 |
| ApaLI | GTGCAC | 1 cut(s) | 610 |
| ApeKI | GCWGC | 1 cut(s) | 572 |
| ApoI | RAATTY | 1 cut(s) | 337 |
| AspS9I | GGNCC | 2 cut(s) | 624, 632 |
| AsuHPI | GGTGA | 3 cut(s) | 159, 311, 673 |
| AsuNHI | GCTAGC | 1 cut(s) | 592 |
| AvaII | GGWCC | 2 cut(s) | 624, 632 |
| BaeGI | GKGCMC | 1 cut(s) | 614 |
| BalI | TGGCCA | 1 cut(s) | 587 |
| Bbv12I | GWGCWC | 1 cut(s) | 614 |
| BbvI | GCAGC | 1 cut(s) | 559 |
| BccI | CCATC | 2 cut(s) | 98, 662 |
| BciT130I | CCWGG | 1 cut(s) | 589 |
| BclI | TGATCA | 1 cut(s) | 279 |
| BfaI | CTAG | 4 cut(s) | 440, 555, 593, 597 |
| BfmI | CTRYAG | 1 cut(s) | 330 |
| BglII | AGATCT | 1 cut(s) | 37 |
| BisI | GCNGC | 1 cut(s) | 573 |
| BlsI | GCNGC | 1 cut(s) | 574 |
| Bme1390I | CCNGG | 1 cut(s) | 589 |
| Bme18I | GGWCC | 2 cut(s) | 624, 632 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 630 |
| BmgT120I | GGNCC | 2 cut(s) | 624, 632 |
| BmrFI | CCNGG | 1 cut(s) | 589 |
| BmtI | GCTAGC | 1 cut(s) | 596 |
| BpuEI | CTTGAG | 2 cut(s) | 146, 600 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 190, 220 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 658 |
| BseBI | CCWGG | 1 cut(s) | 589 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 658 |
| BseMII | CTCAG | 1 cut(s) | 146 |
| BseRI | GAGGAG | 4 cut(s) | 154, 192, 195, 198 |
| BseSI | GKGCMC | 1 cut(s) | 614 |
| BseXI | GCAGC | 1 cut(s) | 559 |
| BshFI | GGCC | 1 cut(s) | 587 |
| BsiHKAI | GWGCWC | 1 cut(s) | 614 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 658 |
| BsnI | GGCC | 1 cut(s) | 587 |
| Bsp1286I | GDGCHC | 1 cut(s) | 614 |
| Bsp143I | GATC | 5 cut(s) | 37, 225, 279, 394, 648 |
| BspACI | CCGC | 1 cut(s) | 18 |
| BspANI | GGCC | 1 cut(s) | 587 |
| BspCNI | CTCAG | 1 cut(s) | 145 |
| BspOI | GCTAGC | 1 cut(s) | 596 |
| BspPI | GGATC | 1 cut(s) | 643 |
| BssMI | GATC | 5 cut(s) | 37, 225, 279, 394, 648 |
| Bst2UI | CCWGG | 1 cut(s) | 589 |
| Bst4CI | ACNGT | 1 cut(s) | 239 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 341 |
| BstC8I | GCNNGC | 1 cut(s) | 594 |
| BstDEI | CTNAG | 1 cut(s) | 132 |
| BstKTI | GATC | 5 cut(s) | 40, 228, 282, 397, 651 |
| BstMBI | GATC | 5 cut(s) | 37, 225, 279, 394, 648 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 341, 569, 593 |
| BstNI | CCWGG | 1 cut(s) | 589 |
| BstSCI | CCNGG | 1 cut(s) | 587 |
| BstSFI | CTRYAG | 1 cut(s) | 330 |
| BstSLI | GKGCMC | 1 cut(s) | 614 |
| BstV1I | GCAGC | 1 cut(s) | 559 |
| BstX2I | RGATCY | 1 cut(s) | 37 |
| BstYI | RGATCY | 1 cut(s) | 37 |
| BsuRI | GGCC | 1 cut(s) | 587 |
| Cac8I | GCNNGC | 1 cut(s) | 594 |
| Cfr13I | GGNCC | 2 cut(s) | 624, 632 |
| CviAII | CATG | 2 cut(s) | 263, 374 |
| DdeI | CTNAG | 1 cut(s) | 132 |
| DpnI | GATC | 5 cut(s) | 39, 227, 281, 396, 650 |
| DpnII | GATC | 5 cut(s) | 37, 225, 279, 394, 648 |
| DraI | TTTAAA | 1 cut(s) | 61 |
| DriI | GACNNNNNGTC | 1 cut(s) | 630 |
| EaeI | YGGCCR | 1 cut(s) | 585 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 630 |
| Eco47I | GGWCC | 2 cut(s) | 624, 632 |
| EcoRII | CCWGG | 1 cut(s) | 587 |
| FaeI | CATG | 2 cut(s) | 266, 377 |
| FatI | CATG | 2 cut(s) | 262, 373 |
| FauI | CCCGC | 1 cut(s) | 11 |
| FbaI | TGATCA | 1 cut(s) | 279 |
| FblI | GTMKAC | 2 cut(s) | 234, 248 |
| Fnu4HI | GCNGC | 1 cut(s) | 573 |
| Fsp4HI | GCNGC | 1 cut(s) | 573 |
| FspBI | CTAG | 4 cut(s) | 440, 555, 593, 597 |
| GluI | GCNGC | 1 cut(s) | 573 |
| HaeIII | GGCC | 1 cut(s) | 587 |
| Hin1II | CATG | 2 cut(s) | 266, 377 |
| HindIII | AAGCTT | 1 cut(s) | 532 |
| HinfI | GANTC | 3 cut(s) | 153, 199, 483 |
| HphI | GGTGA | 3 cut(s) | 159, 311, 673 |
| Hpy166II | GTNNAC | 4 cut(s) | 235, 249, 612, 683 |
| Hpy188I | TCNGA | 2 cut(s) | 135, 279 |
| Hpy188III | TCNNGA | 4 cut(s) | 94, 125, 434, 547 |
| Hpy8I | GTNNAC | 4 cut(s) | 235, 249, 612, 683 |
| HpyAV | CCTTC | 2 cut(s) | 195, 350 |
| HpyCH4III | ACNGT | 1 cut(s) | 239 |
| HpyCH4V | TGCA | 6 cut(s) | 43, 53, 266, 344, 468, 612 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 341, 569, 593 |
| HpyF3I | CTNAG | 1 cut(s) | 132 |
| Hsp92II | CATG | 2 cut(s) | 266, 377 |
| Ksp22I | TGATCA | 1 cut(s) | 279 |
| Kzo9I | GATC | 5 cut(s) | 37, 225, 279, 394, 648 |
| LpnPI | CCDG | 7 cut(s) | 252, 297, 437, 454, 532, 574, 601 |
| Lsp1109I | GCAGC | 1 cut(s) | 559 |
| MaeI | CTAG | 4 cut(s) | 440, 555, 593, 597 |
| MaeIII | GTNAC | 1 cut(s) | 65 |
| MalI | GATC | 5 cut(s) | 39, 227, 281, 396, 650 |
| MboI | GATC | 5 cut(s) | 37, 225, 279, 394, 648 |
| MboII | GAAGA | 4 cut(s) | 148, 180, 235, 472 |
| MfeI | CAATTG | 2 cut(s) | 78, 345 |
| MflI | RGATCY | 1 cut(s) | 37 |
| MhlI | GDGCHC | 1 cut(s) | 614 |
| MlsI | TGGCCA | 1 cut(s) | 587 |
| MluCI | AATT | 6 cut(s) | 78, 337, 345, 351, 383, 475 |
| MluNI | TGGCCA | 1 cut(s) | 587 |
| MlyI | GAGTC | 1 cut(s) | 193 |
| Mox20I | TGGCCA | 1 cut(s) | 587 |
| MscI | TGGCCA | 1 cut(s) | 587 |
| MseI | TTAA | 1 cut(s) | 60 |
| MslI | CAYNNNNRTG | 2 cut(s) | 110, 644 |
| Msp20I | TGGCCA | 1 cut(s) | 587 |
| MspR9I | CCNGG | 1 cut(s) | 589 |
| MunI | CAATTG | 2 cut(s) | 78, 345 |
| MvaI | CCWGG | 1 cut(s) | 589 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 341, 569, 593 |
| NdeII | GATC | 5 cut(s) | 37, 225, 279, 394, 648 |
| NheI | GCTAGC | 1 cut(s) | 592 |
| NlaIII | CATG | 2 cut(s) | 266, 377 |
| NmuCI | GTSAC | 1 cut(s) | 65 |
| OliI | CACNNNNGTG | 1 cut(s) | 110 |
| PfeI | GAWTC | 2 cut(s) | 153, 483 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 658 |
| PkrI | GCNGC | 1 cut(s) | 574 |
| PleI | GAGTC | 1 cut(s) | 193 |
| PpsI | GAGTC | 1 cut(s) | 193 |
| Psp6I | CCWGG | 1 cut(s) | 587 |
| PspGI | CCWGG | 1 cut(s) | 587 |
| PspPI | GGNCC | 2 cut(s) | 624, 632 |
| PsuI | RGATCY | 1 cut(s) | 37 |
| RseI | CAYNNNNRTG | 2 cut(s) | 110, 644 |
| SaqAI | TTAA | 1 cut(s) | 60 |
| SatI | GCNGC | 1 cut(s) | 573 |
| Sau3AI | GATC | 5 cut(s) | 37, 225, 279, 394, 648 |
| Sau96I | GGNCC | 2 cut(s) | 624, 632 |
| SchI | GAGTC | 1 cut(s) | 193 |
| ScrFI | CCNGG | 1 cut(s) | 589 |
| SduI | GDGCHC | 1 cut(s) | 614 |
| SfcI | CTRYAG | 1 cut(s) | 330 |
| SinI | GGWCC | 2 cut(s) | 624, 632 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 110, 644 |
| SmlI | CTYRAG | 2 cut(s) | 125, 615 |
| SmoI | CTYRAG | 2 cut(s) | 125, 615 |
| Sse9I | AATT | 6 cut(s) | 78, 337, 345, 351, 383, 475 |
| SsiI | CCGC | 1 cut(s) | 18 |
| SspMI | CTAG | 4 cut(s) | 440, 555, 593, 597 |
| StyD4I | CCNGG | 1 cut(s) | 587 |
| TaaI | ACNGT | 1 cut(s) | 239 |
| TasI | AATT | 6 cut(s) | 78, 337, 345, 351, 383, 475 |
| TfiI | GAWTC | 2 cut(s) | 153, 483 |
| Tru1I | TTAA | 1 cut(s) | 60 |
| Tru9I | TTAA | 1 cut(s) | 60 |
| TseFI | GTSAC | 1 cut(s) | 65 |
| TseI | GCWGC | 1 cut(s) | 572 |
| Tsp45I | GTSAC | 1 cut(s) | 65 |
| TspDTI | ATGAA | 2 cut(s) | 251, 306 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 658 |
| VneI | GTGCAC | 1 cut(s) | 610 |
| VpaK11BI | GGWCC | 2 cut(s) | 624, 632 |
| XapI | RAATTY | 1 cut(s) | 337 |
| XmiI | GTMKAC | 2 cut(s) | 234, 248 |
| XspI | CTAG | 4 cut(s) | 440, 555, 593, 597 |