ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 125 - 246 | 8.3e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 139 |
| Acc36I | ACCTGC | 3 cut(s) | 139, 479, 829 |
| AciI | CCGC | 3 cut(s) | 497, 716, 719 |
| AclWI | GGATC | 5 cut(s) | 44, 101, 114, 313, 776 |
| AcsI | RAATTY | 2 cut(s) | 391, 616 |
| AcuI | CTGAAG | 1 cut(s) | 513 |
| AfaI | GTAC | 1 cut(s) | 445 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 174 |
| AgsI | TTSAA | 4 cut(s) | 90, 396, 566, 578 |
| AluBI | AGCT | 6 cut(s) | 370, 410, 503, 533, 664, 740 |
| AluI | AGCT | 6 cut(s) | 370, 410, 503, 533, 664, 740 |
| Alw26I | GTCTC | 3 cut(s) | 7, 286, 639 |
| AlwI | GGATC | 5 cut(s) | 44, 101, 114, 313, 776 |
| AoxI | GGCC | 2 cut(s) | 197, 271 |
| ApeKI | GCWGC | 3 cut(s) | 23, 247, 713 |
| ApoI | RAATTY | 2 cut(s) | 391, 616 |
| AseI | ATTAAT | 1 cut(s) | 453 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 319 |
| AsuII | TTCGAA | 1 cut(s) | 602 |
| AsuNHI | GCTAGC | 1 cut(s) | 736 |
| BamHI | GGATCC | 1 cut(s) | 106 |
| BbsI | GAAGAC | 1 cut(s) | 78 |
| BbvCI | CCTCAGC | 1 cut(s) | 135 |
| BbvI | GCAGC | 3 cut(s) | 10, 259, 700 |
| BccI | CCATC | 1 cut(s) | 164 |
| BceAI | ACGGC | 1 cut(s) | 829 |
| BcoDI | GTCTC | 3 cut(s) | 7, 286, 639 |
| BfaI | CTAG | 2 cut(s) | 534, 737 |
| BfuAI | ACCTGC | 3 cut(s) | 139, 479, 829 |
| BisI | GCNGC | 4 cut(s) | 24, 248, 714, 717 |
| BlsI | GCNGC | 4 cut(s) | 25, 249, 715, 718 |
| BmiI | GGNNCC | 2 cut(s) | 108, 180 |
| BmsI | GCATC | 2 cut(s) | 410, 783 |
| BmtI | GCTAGC | 1 cut(s) | 740 |
| BpiI | GAAGAC | 1 cut(s) | 78 |
| Bpu10I | CCTNAGC | 1 cut(s) | 135 |
| Bpu14I | TTCGAA | 1 cut(s) | 602 |
| BpuEI | CTTGAG | 1 cut(s) | 686 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 34 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 174 |
| Bse1I | ACTGG | 1 cut(s) | 445 |
| BseGI | GGATG | 2 cut(s) | 156, 425 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 174 |
| BseMII | CTCAG | 3 cut(s) | 33, 126, 131 |
| BseNI | ACTGG | 1 cut(s) | 445 |
| BseRI | GAGGAG | 1 cut(s) | 816 |
| BseXI | GCAGC | 3 cut(s) | 10, 259, 700 |
| BseYI | CCCAGC | 1 cut(s) | 410 |
| BsgI | GTGCAG | 1 cut(s) | 266 |
| BshFI | GGCC | 2 cut(s) | 199, 273 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 174 |
| BsmAI | GTCTC | 3 cut(s) | 7, 286, 639 |
| BsnI | GGCC | 2 cut(s) | 199, 273 |
| Bsp119I | TTCGAA | 1 cut(s) | 602 |
| Bsp143I | GATC | 4 cut(s) | 49, 106, 305, 768 |
| BspACI | CCGC | 3 cut(s) | 497, 716, 719 |
| BspANI | GGCC | 2 cut(s) | 199, 273 |
| BspCNI | CTCAG | 3 cut(s) | 34, 127, 130 |
| BspLI | GGNNCC | 2 cut(s) | 108, 180 |
| BspMI | ACCTGC | 3 cut(s) | 139, 479, 829 |
| BspOI | GCTAGC | 1 cut(s) | 740 |
| BspPI | GGATC | 5 cut(s) | 44, 101, 114, 313, 776 |
| BspT104I | TTCGAA | 1 cut(s) | 602 |
| BsrI | ACTGG | 1 cut(s) | 445 |
| BssMI | GATC | 4 cut(s) | 49, 106, 305, 768 |
| Bst4CI | ACNGT | 1 cut(s) | 364 |
| BstBI | TTCGAA | 1 cut(s) | 602 |
| BstC8I | GCNNGC | 5 cut(s) | 21, 275, 495, 729, 738 |
| BstDEI | CTNAG | 4 cut(s) | 42, 117, 135, 514 |
| BstF5I | GGATG | 2 cut(s) | 156, 425 |
| BstKTI | GATC | 4 cut(s) | 52, 109, 308, 771 |
| BstMAI | GTCTC | 3 cut(s) | 7, 286, 639 |
| BstMBI | GATC | 4 cut(s) | 49, 106, 305, 768 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 670, 733, 737 |
| BstNSI | RCATGY | 1 cut(s) | 497 |
| BstV1I | GCAGC | 3 cut(s) | 10, 259, 700 |
| BstV2I | GAAGAC | 1 cut(s) | 78 |
| BstX2I | RGATCY | 1 cut(s) | 106 |
| BstYI | RGATCY | 1 cut(s) | 106 |
| BsuRI | GGCC | 2 cut(s) | 199, 273 |
| BtsCI | GGATG | 2 cut(s) | 156, 425 |
| BveI | ACCTGC | 3 cut(s) | 139, 479, 829 |
| Cac8I | GCNNGC | 5 cut(s) | 21, 275, 495, 729, 738 |
| Csp6I | GTAC | 1 cut(s) | 444 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 771, 806 |
| CviAII | CATG | 3 cut(s) | 242, 251, 494 |
| CviQI | GTAC | 1 cut(s) | 444 |
| DdeI | CTNAG | 4 cut(s) | 42, 117, 135, 514 |
| DpnI | GATC | 4 cut(s) | 51, 108, 307, 770 |
| DpnII | GATC | 4 cut(s) | 49, 106, 305, 768 |
| EciI | GGCGGA | 1 cut(s) | 734 |
| Eco57I | CTGAAG | 1 cut(s) | 513 |
| EcoRI | GAATTC | 1 cut(s) | 391 |
| EcoT22I | ATGCAT | 1 cut(s) | 425 |
| FaeI | CATG | 3 cut(s) | 245, 254, 497 |
| FaiI | YATR | 8 cut(s) | 36, 220, 243, 252, 345, 495, 622, 627 |
| FatI | CATG | 3 cut(s) | 241, 250, 493 |
| Fnu4HI | GCNGC | 4 cut(s) | 24, 248, 714, 717 |
| FokI | GGATG | 2 cut(s) | 143, 432 |
| Fsp4HI | GCNGC | 4 cut(s) | 24, 248, 714, 717 |
| FspBI | CTAG | 2 cut(s) | 534, 737 |
| GluI | GCNGC | 4 cut(s) | 24, 248, 714, 717 |
| GsaI | CCCAGC | 1 cut(s) | 414 |
| HaeIII | GGCC | 2 cut(s) | 199, 273 |
| Hin1II | CATG | 3 cut(s) | 245, 254, 497 |
| HindIII | AAGCTT | 1 cut(s) | 662 |
| HinfI | GANTC | 3 cut(s) | 100, 152, 331 |
| Hpy188I | TCNGA | 5 cut(s) | 43, 60, 314, 336, 431 |
| Hpy188III | TCNNGA | 4 cut(s) | 104, 328, 542, 697 |
| HpyAV | CCTTC | 1 cut(s) | 561 |
| HpyCH4III | ACNGT | 1 cut(s) | 364 |
| HpyCH4V | TGCA | 4 cut(s) | 68, 247, 423, 493 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 670, 733, 737 |
| HpyF3I | CTNAG | 4 cut(s) | 42, 117, 135, 514 |
| Hsp92II | CATG | 3 cut(s) | 245, 254, 497 |
| Kzo9I | GATC | 4 cut(s) | 49, 106, 305, 768 |
| LmnI | GCTCC | 2 cut(s) | 352, 829 |
| Lsp1109I | GCAGC | 3 cut(s) | 10, 259, 700 |
| LweI | GCATC | 2 cut(s) | 410, 783 |
| MaeI | CTAG | 2 cut(s) | 534, 737 |
| MaeIII | GTNAC | 1 cut(s) | 707 |
| MalI | GATC | 4 cut(s) | 51, 108, 307, 770 |
| MboI | GATC | 4 cut(s) | 49, 106, 305, 768 |
| MboII | GAAGA | 3 cut(s) | 78, 312, 667 |
| MfeI | CAATTG | 1 cut(s) | 581 |
| MflI | RGATCY | 1 cut(s) | 106 |
| MluCI | AATT | 6 cut(s) | 373, 391, 447, 581, 594, 616 |
| MlyI | GAGTC | 2 cut(s) | 161, 340 |
| MnlI | CCTC | 9 cut(s) | 54, 130, 178, 248, 511, 645, 684, 789, 837 |
| Mph1103I | ATGCAT | 1 cut(s) | 425 |
| MroXI | GAANNNNTTC | 1 cut(s) | 319 |
| MseI | TTAA | 4 cut(s) | 453, 465, 660, 804 |
| MslI | CAYNNNNRTG | 1 cut(s) | 33 |
| MunI | CAATTG | 1 cut(s) | 581 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 670, 733, 737 |
| NdeII | GATC | 4 cut(s) | 49, 106, 305, 768 |
| NheI | GCTAGC | 1 cut(s) | 736 |
| NlaIII | CATG | 3 cut(s) | 245, 254, 497 |
| NlaIV | GGNNCC | 2 cut(s) | 108, 180 |
| NsiI | ATGCAT | 1 cut(s) | 425 |
| NspI | RCATGY | 1 cut(s) | 497 |
| NspV | TTCGAA | 1 cut(s) | 602 |
| PaeI | GCATGC | 1 cut(s) | 497 |
| PaqCI | CACCTGC | 1 cut(s) | 139 |
| PdmI | GAANNNNTTC | 1 cut(s) | 319 |
| PfeI | GAWTC | 1 cut(s) | 100 |
| PkrI | GCNGC | 4 cut(s) | 25, 249, 715, 718 |
| PleI | GAGTC | 2 cut(s) | 160, 339 |
| PpsI | GAGTC | 2 cut(s) | 160, 339 |
| PshBI | ATTAAT | 1 cut(s) | 453 |
| PspFI | CCCAGC | 1 cut(s) | 410 |
| PspN4I | GGNNCC | 2 cut(s) | 108, 180 |
| PsuI | RGATCY | 1 cut(s) | 106 |
| RsaI | GTAC | 1 cut(s) | 445 |
| RsaNI | GTAC | 1 cut(s) | 444 |
| RseI | CAYNNNNRTG | 1 cut(s) | 33 |
| SaqAI | TTAA | 4 cut(s) | 453, 465, 660, 804 |
| SatI | GCNGC | 4 cut(s) | 24, 248, 714, 717 |
| Sau3AI | GATC | 4 cut(s) | 49, 106, 305, 768 |
| SchI | GAGTC | 2 cut(s) | 161, 340 |
| SfaNI | GCATC | 2 cut(s) | 410, 783 |
| SfuI | TTCGAA | 1 cut(s) | 602 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 33 |
| SmlI | CTYRAG | 1 cut(s) | 665 |
| SmoI | CTYRAG | 1 cut(s) | 665 |
| SphI | GCATGC | 1 cut(s) | 497 |
| Sse9I | AATT | 6 cut(s) | 373, 391, 447, 581, 594, 616 |
| SsiI | CCGC | 3 cut(s) | 497, 716, 719 |
| SspI | AATATT | 1 cut(s) | 266 |
| SspMI | CTAG | 2 cut(s) | 534, 737 |
| TaaI | ACNGT | 1 cut(s) | 364 |
| TaqI | TCGA | 2 cut(s) | 327, 602 |
| TasI | AATT | 6 cut(s) | 373, 391, 447, 581, 594, 616 |
| TauI | GCSGC | 1 cut(s) | 719 |
| TfiI | GAWTC | 1 cut(s) | 100 |
| Tru1I | TTAA | 4 cut(s) | 453, 465, 660, 804 |
| Tru9I | TTAA | 4 cut(s) | 453, 465, 660, 804 |
| TseI | GCWGC | 3 cut(s) | 23, 247, 713 |
| TspDTI | ATGAA | 3 cut(s) | 207, 279, 777 |
| VspI | ATTAAT | 1 cut(s) | 453 |
| XapI | RAATTY | 2 cut(s) | 391, 616 |
| XceI | RCATGY | 1 cut(s) | 497 |
| XmnI | GAANNNNTTC | 1 cut(s) | 319 |
| XspI | CTAG | 2 cut(s) | 534, 737 |
| Zsp2I | ATGCAT | 1 cut(s) | 425 |