Rmu_sc0001348.1_g000008

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001348.1
OG0000093
Physical Location & Seq
Forward (+)
43427 .. 45973
2547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001348.1_g000008.1.cds

Sequence Viewer

Length: 534 bp
atgttttcggatctacggatctggtgtcacagtggtgactgttttcggatctacagatctggtgtcacagtgatgactgaggcaattatatcggaaaccacgcctttggccgggttagaatatcgagtgatcattatcaaagctgaggtgtacgttagatggcatggacgtggaagggtgctcttagttttaagtgttccgctgtgtataattcgaagtcacaactcctcgctaatcactgcagcgtcaagatcaggaacttatggatcagtggagatagcagaagcacaggctgctcttctcggcatcaacatggcgattgaaatgaatctgaaaagagtaaggatggaaagtgatactaaagaggttgtatcagacataacctctccaatcgcgaacaaggcagctcacatagcagctttgctagccaatcggtcggtgggtcttcatagatgggctgatcagccaccaccttcccttgccctggtactcctgaatgacggccttccctgcccacatggcaaggagatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

177

Amino Acids

19.36

Weight (kDa)

8.42

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 395
AciI CCGC 1 cut(s) 200
AclWI GGATC 4 cut(s) 18, 26, 56, 274
AcoI YGGCCR 1 cut(s) 108
AfaI GTAC 2 cut(s) 152, 489
AfiI CCNNNNNNNGG 2 cut(s) 110, 484
AgsI TTSAA 1 cut(s) 323
AjiI CACGTC 1 cut(s) 170
AjnI CCWGG 1 cut(s) 483
AleI CACNNNNGTG 1 cut(s) 33
AluBI AGCT 3 cut(s) 143, 407, 419
AluI AGCT 3 cut(s) 143, 407, 419
Alw21I GWGCWC 1 cut(s) 183
AlwI GGATC 4 cut(s) 18, 26, 56, 274
AoxI GGCC 2 cut(s) 108, 502
ApeKI GCWGC 4 cut(s) 242, 293, 404, 416
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 47
AsuII TTCGAA 1 cut(s) 214
AsuNHI GCTAGC 1 cut(s) 424
BbsI GAAGAC 1 cut(s) 437
Bbv12I GWGCWC 1 cut(s) 183
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 4 cut(s) 254, 280, 416, 428
BccI CCATC 3 cut(s) 153, 340, 447
BceAI ACGGC 1 cut(s) 517
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BciT130I CCWGG 1 cut(s) 485
BclI TGATCA 2 cut(s) 129, 460
BcnI CCSGG 1 cut(s) 112
BfaI CTAG 1 cut(s) 425
BfmI CTRYAG 2 cut(s) 52, 240
BglI GCCNNNNNGGC 1 cut(s) 519
BglII AGATCT 1 cut(s) 56
BisI GCNGC 4 cut(s) 243, 294, 405, 417
BlsI GCNGC 4 cut(s) 244, 295, 406, 418
Bme1390I CCNGG 2 cut(s) 112, 485
BmgBI CACGTC 1 cut(s) 170
BmrFI CCNGG 2 cut(s) 112, 485
BmsI GCATC 1 cut(s) 315
BmtI GCTAGC 1 cut(s) 428
BpiI GAAGAC 1 cut(s) 437
Bpu10I CCTNAGC 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 112
BsaBI GATNNNNATC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 483
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 484
Bse8I GATNNNNATC 1 cut(s) 134
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 483
BseGI GGATG 1 cut(s) 351
BseJI GATNNNNATC 1 cut(s) 134
BseLI CCNNNNNNNGG 2 cut(s) 110, 484
BseMII CTCAG 2 cut(s) 69, 135
BseRI GAGGAG 1 cut(s) 217
BseXI GCAGC 4 cut(s) 254, 280, 416, 428
Bsh1236I CGCG 1 cut(s) 395
Bsh1285I CGRYCG 1 cut(s) 437
BshFI GGCC 2 cut(s) 110, 504
BsiEI CGRYCG 1 cut(s) 437
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 110, 484
BsnI GGCC 2 cut(s) 110, 504
Bsp119I TTCGAA 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 8 cut(s) 10, 18, 48, 56, 129, 251, 266, 460
Bsp68I TCGCGA 1 cut(s) 395
BspACI CCGC 1 cut(s) 200
BspANI GGCC 2 cut(s) 110, 504
BspCNI CTCAG 2 cut(s) 70, 136
BspFNI CGCG 1 cut(s) 395
BspMAI CTGCAG 1 cut(s) 244
BspOI GCTAGC 1 cut(s) 428
BspPI GGATC 4 cut(s) 18, 26, 56, 274
BspQI GCTCTTC 1 cut(s) 303
BspT104I TTCGAA 1 cut(s) 214
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 8 cut(s) 10, 18, 48, 56, 129, 251, 266, 460
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 3 cut(s) 32, 41, 70
Bst6I CTCTTC 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 293
BstBI TTCGAA 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 3 cut(s) 78, 144, 184
BstF5I GGATG 1 cut(s) 351
BstFNI CGCG 1 cut(s) 395
BstKTI GATC 8 cut(s) 13, 21, 51, 59, 132, 254, 269, 463
BstMBI GATC 8 cut(s) 10, 18, 48, 56, 129, 251, 266, 460
BstMCI CGRYCG 1 cut(s) 437
BstMWI GCNNNNNNNGC 6 cut(s) 293, 401, 413, 425, 510, 519
BstNI CCWGG 1 cut(s) 485
BstSCI CCNGG 2 cut(s) 110, 483
BstSFI CTRYAG 2 cut(s) 52, 240
BstUI CGCG 1 cut(s) 395
BstV1I GCAGC 4 cut(s) 254, 280, 416, 428
BstV2I GAAGAC 1 cut(s) 437
BstX2I RGATCY 4 cut(s) 10, 18, 48, 56
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 4 cut(s) 10, 18, 48, 56
BsuRI GGCC 2 cut(s) 110, 504
BtrI CACGTC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 351
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 4 cut(s) 37, 75, 237, 276
BtuMI TCGCGA 1 cut(s) 395
Cac8I GCNNGC 1 cut(s) 426
CseI GACGC 1 cut(s) 234
Csp6I GTAC 2 cut(s) 151, 488
CviAII CATG 3 cut(s) 164, 313, 518
CviJI RGCY 9 cut(s) 110, 143, 293, 407, 419, 428, 458, 466, 504
CviKI_1 RGCY 9 cut(s) 110, 143, 293, 407, 419, 428, 458, 466, 504
CviQI GTAC 2 cut(s) 151, 488
DdeI CTNAG 3 cut(s) 78, 144, 184
DpnI GATC 8 cut(s) 12, 20, 50, 58, 131, 253, 268, 462
DpnII GATC 8 cut(s) 10, 18, 48, 56, 129, 251, 266, 460
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 483
FaeI CATG 3 cut(s) 167, 316, 521
FatI CATG 3 cut(s) 163, 312, 517
FbaI TGATCA 2 cut(s) 129, 460
Fnu4HI GCNGC 4 cut(s) 243, 294, 405, 417
FokI GGATG 1 cut(s) 358
Fsp4HI GCNGC 4 cut(s) 243, 294, 405, 417
FspBI CTAG 1 cut(s) 425
GluI GCNGC 4 cut(s) 243, 294, 405, 417
HaeIII GGCC 2 cut(s) 110, 504
HapII CCGG 1 cut(s) 111
HgaI GACGC 1 cut(s) 234
Hin1II CATG 3 cut(s) 167, 316, 521
HinfI GANTC 1 cut(s) 328
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 5 cut(s) 10, 48, 94, 333, 376
Hpy188III TCNNGA 4 cut(s) 249, 255, 394, 493
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 3 cut(s) 168, 483, 515
HpyCH4III ACNGT 3 cut(s) 32, 41, 70
HpyCH4IV ACGT 2 cut(s) 153, 169
HpyCH4V TGCA 1 cut(s) 242
HpyF10VI GCNNNNNNNGC 6 cut(s) 293, 401, 413, 425, 510, 519
HpyF3I CTNAG 3 cut(s) 78, 144, 184
HpySE526I ACGT 2 cut(s) 153, 169
Hsp92II CATG 3 cut(s) 167, 316, 521
Ksp22I TGATCA 2 cut(s) 129, 460
Kzo9I GATC 8 cut(s) 10, 18, 48, 56, 129, 251, 266, 460
LguI GCTCTTC 1 cut(s) 303
LpnPI CCDG 9 cut(s) 7, 45, 124, 240, 275, 470, 497, 506, 523
Lsp1109I GCAGC 4 cut(s) 254, 280, 416, 428
LweI GCATC 1 cut(s) 315
MaeI CTAG 1 cut(s) 425
MaeII ACGT 2 cut(s) 153, 169
MaeIII GTNAC 4 cut(s) 26, 35, 64, 218
MalI GATC 8 cut(s) 12, 20, 50, 58, 131, 253, 268, 462
MboI GATC 8 cut(s) 10, 18, 48, 56, 129, 251, 266, 460
MboII GAAGA 2 cut(s) 290, 437
MflI RGATCY 4 cut(s) 10, 18, 48, 56
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 2 cut(s) 84, 210
MnlI CCTC 5 cut(s) 73, 139, 238, 358, 394
MseI TTAA 1 cut(s) 191
MslI CAYNNNNRTG 4 cut(s) 33, 71, 168, 311
MspA1I CMGCKG 1 cut(s) 202
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 2 cut(s) 112, 485
MvaI CCWGG 1 cut(s) 485
MvnI CGCG 1 cut(s) 395
MwoI GCNNNNNNNGC 6 cut(s) 293, 401, 413, 425, 510, 519
NciI CCSGG 1 cut(s) 112
NdeII GATC 8 cut(s) 10, 18, 48, 56, 129, 251, 266, 460
NheI GCTAGC 1 cut(s) 424
NlaIII CATG 3 cut(s) 167, 316, 521
NmeAIII GCCGAG 1 cut(s) 282
NmuCI GTSAC 4 cut(s) 26, 35, 64, 218
NruI TCGCGA 1 cut(s) 395
NspV TTCGAA 1 cut(s) 214
OliI CACNNNNGTG 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 303
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 4 cut(s) 244, 295, 406, 418
Psp6I CCWGG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 483
PstI CTGCAG 1 cut(s) 244
PsuI RGATCY 4 cut(s) 10, 18, 48, 56
RruI TCGCGA 1 cut(s) 395
RsaI GTAC 2 cut(s) 152, 489
RsaNI GTAC 2 cut(s) 151, 488
RseI CAYNNNNRTG 4 cut(s) 33, 71, 168, 311
SapI GCTCTTC 1 cut(s) 303
SaqAI TTAA 1 cut(s) 191
SatI GCNGC 4 cut(s) 243, 294, 405, 417
Sau3AI GATC 8 cut(s) 10, 18, 48, 56, 129, 251, 266, 460
ScrFI CCNGG 2 cut(s) 112, 485
SduI GDGCHC 1 cut(s) 183
SetI ASST 9 cut(s) 145, 150, 156, 172, 369, 386, 409, 421, 475
SfaNI GCATC 1 cut(s) 315
SfcI CTRYAG 2 cut(s) 52, 240
SfuI TTCGAA 1 cut(s) 214
SmiMI CAYNNNNRTG 4 cut(s) 33, 71, 168, 311
Sse9I AATT 2 cut(s) 84, 210
SsiI CCGC 1 cut(s) 200
SspMI CTAG 1 cut(s) 425
StyD4I CCNGG 2 cut(s) 110, 483
TaaI ACNGT 3 cut(s) 32, 41, 70
TaiI ACGT 2 cut(s) 156, 172
TaqI TCGA 2 cut(s) 124, 214
TaqII GACCGA 1 cut(s) 423
TasI AATT 2 cut(s) 84, 210
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 1 cut(s) 191
Tru9I TTAA 1 cut(s) 191
TscAI CASTG 4 cut(s) 37, 75, 244, 276
TseFI GTSAC 4 cut(s) 26, 35, 64, 218
TseI GCWGC 4 cut(s) 242, 293, 404, 416
Tsp45I GTSAC 4 cut(s) 26, 35, 64, 218
TspDTI ATGAA 2 cut(s) 341, 437
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 4 cut(s) 37, 75, 244, 276
XcmI CCANNNNNNNNNTGG 1 cut(s) 436
XspI CTAG 1 cut(s) 425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.