ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 56 - 106 | 1.4e-06 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 142 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 205 |
| AgsI | TTSAA | 1 cut(s) | 47 |
| AhlI | ACTAGT | 1 cut(s) | 110 |
| AleI | CACNNNNGTG | 1 cut(s) | 201 |
| AluBI | AGCT | 1 cut(s) | 81 |
| AluI | AGCT | 1 cut(s) | 81 |
| AoxI | GGCC | 2 cut(s) | 176, 313 |
| ApeKI | GCWGC | 1 cut(s) | 13 |
| AspS9I | GGNCC | 2 cut(s) | 176, 313 |
| AsuHPI | GGTGA | 2 cut(s) | 22, 188 |
| BbsI | GAAGAC | 1 cut(s) | 195 |
| BbvCI | CCTCAGC | 1 cut(s) | 297 |
| BbvI | GCAGC | 1 cut(s) | 25 |
| BccI | CCATC | 2 cut(s) | 167, 290 |
| BcuI | ACTAGT | 1 cut(s) | 110 |
| BfaI | CTAG | 4 cut(s) | 26, 111, 129, 319 |
| BisI | GCNGC | 1 cut(s) | 14 |
| BlsI | GCNGC | 1 cut(s) | 15 |
| BmgT120I | GGNCC | 2 cut(s) | 176, 313 |
| BmiI | GGNNCC | 1 cut(s) | 53 |
| BmsI | GCATC | 2 cut(s) | 94, 267 |
| BpiI | GAAGAC | 1 cut(s) | 195 |
| Bpu10I | CCTNAGC | 1 cut(s) | 297 |
| BsaJI | CCNNGG | 1 cut(s) | 179 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 43, 73 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 205 |
| BseDI | CCNNGG | 1 cut(s) | 179 |
| BseGI | GGATG | 2 cut(s) | 178, 258 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 205 |
| BseMII | CTCAG | 1 cut(s) | 288 |
| BseXI | GCAGC | 1 cut(s) | 25 |
| BshFI | GGCC | 2 cut(s) | 178, 315 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 205 |
| BsnI | GGCC | 2 cut(s) | 178, 315 |
| Bsp19I | CCATGG | 1 cut(s) | 179 |
| BspACI | CCGC | 1 cut(s) | 142 |
| BspANI | GGCC | 2 cut(s) | 178, 315 |
| BspCNI | CTCAG | 1 cut(s) | 289 |
| BspHI | TCATGA | 2 cut(s) | 100, 115 |
| BspLI | GGNNCC | 1 cut(s) | 53 |
| BssECI | CCNNGG | 1 cut(s) | 179 |
| BssT1I | CCWWGG | 1 cut(s) | 179 |
| Bst4CI | ACNGT | 1 cut(s) | 203 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 256 |
| BstDEI | CTNAG | 1 cut(s) | 297 |
| BstDSI | CCRYGG | 1 cut(s) | 179 |
| BstF5I | GGATG | 2 cut(s) | 178, 258 |
| BstV1I | GCAGC | 1 cut(s) | 25 |
| BstV2I | GAAGAC | 1 cut(s) | 195 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 289 |
| BsuRI | GGCC | 2 cut(s) | 178, 315 |
| BtgI | CCRYGG | 1 cut(s) | 179 |
| BtsCI | GGATG | 2 cut(s) | 178, 258 |
| BtsI | GCAGTG | 1 cut(s) | 309 |
| BtsIMutI | CAGTG | 2 cut(s) | 208, 309 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 256 |
| CciI | TCATGA | 2 cut(s) | 100, 115 |
| Cfr13I | GGNCC | 2 cut(s) | 176, 313 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 113, 148 |
| CviAII | CATG | 5 cut(s) | 8, 101, 116, 180, 263 |
| CviJI | RGCY | 6 cut(s) | 16, 54, 81, 178, 296, 315 |
| CviKI_1 | RGCY | 6 cut(s) | 16, 54, 81, 178, 296, 315 |
| DdeI | CTNAG | 1 cut(s) | 297 |
| Eco130I | CCWWGG | 1 cut(s) | 179 |
| EcoO109I | RGGNCCY | 1 cut(s) | 313 |
| EcoT14I | CCWWGG | 1 cut(s) | 179 |
| ErhI | CCWWGG | 1 cut(s) | 179 |
| FaeI | CATG | 5 cut(s) | 11, 104, 119, 183, 266 |
| FaiI | YATR | 7 cut(s) | 9, 102, 117, 156, 181, 231, 264 |
| FatI | CATG | 5 cut(s) | 7, 100, 115, 179, 262 |
| FauI | CCCGC | 1 cut(s) | 149 |
| Fnu4HI | GCNGC | 1 cut(s) | 14 |
| FokI | GGATG | 2 cut(s) | 185, 245 |
| Fsp4HI | GCNGC | 1 cut(s) | 14 |
| FspBI | CTAG | 4 cut(s) | 26, 111, 129, 319 |
| GluI | GCNGC | 1 cut(s) | 14 |
| HaeIII | GGCC | 2 cut(s) | 178, 315 |
| Hin1II | CATG | 5 cut(s) | 11, 104, 119, 183, 266 |
| HindIII | AAGCTT | 1 cut(s) | 79 |
| HinfI | GANTC | 1 cut(s) | 268 |
| HphI | GGTGA | 2 cut(s) | 22, 188 |
| Hpy188I | TCNGA | 2 cut(s) | 150, 224 |
| Hpy188III | TCNNGA | 2 cut(s) | 101, 116 |
| HpyCH4III | ACNGT | 1 cut(s) | 203 |
| HpyCH4V | TGCA | 2 cut(s) | 37, 254 |
| HpyF3I | CTNAG | 1 cut(s) | 297 |
| Hsp92II | CATG | 5 cut(s) | 11, 104, 119, 183, 266 |
| LmnI | GCTCC | 1 cut(s) | 51 |
| LpnPI | CCDG | 2 cut(s) | 47, 234 |
| Lsp1109I | GCAGC | 1 cut(s) | 25 |
| LweI | GCATC | 2 cut(s) | 94, 267 |
| MaeI | CTAG | 4 cut(s) | 26, 111, 129, 319 |
| MaeIII | GTNAC | 3 cut(s) | 28, 236, 269 |
| MboII | GAAGA | 1 cut(s) | 200 |
| MluCI | AATT | 1 cut(s) | 213 |
| MlyI | GAGTC | 1 cut(s) | 277 |
| MmeI | TCCRAC | 2 cut(s) | 173, 190 |
| MnlI | CCTC | 3 cut(s) | 105, 286, 292 |
| MseI | TTAA | 1 cut(s) | 309 |
| MslI | CAYNNNNRTG | 3 cut(s) | 102, 201, 287 |
| NcoI | CCATGG | 1 cut(s) | 179 |
| NlaIII | CATG | 5 cut(s) | 11, 104, 119, 183, 266 |
| NlaIV | GGNNCC | 1 cut(s) | 53 |
| NmuCI | GTSAC | 3 cut(s) | 28, 236, 269 |
| OliI | CACNNNNGTG | 1 cut(s) | 201 |
| PagI | TCATGA | 2 cut(s) | 100, 115 |
| PkrI | GCNGC | 1 cut(s) | 15 |
| PleI | GAGTC | 1 cut(s) | 276 |
| PpsI | GAGTC | 1 cut(s) | 276 |
| PspN4I | GGNNCC | 1 cut(s) | 53 |
| PspPI | GGNCC | 2 cut(s) | 176, 313 |
| RseI | CAYNNNNRTG | 3 cut(s) | 102, 201, 287 |
| SaqAI | TTAA | 1 cut(s) | 309 |
| SatI | GCNGC | 1 cut(s) | 14 |
| Sau96I | GGNCC | 2 cut(s) | 176, 313 |
| SchI | GAGTC | 1 cut(s) | 277 |
| SetI | ASST | 1 cut(s) | 83 |
| SfaNI | GCATC | 2 cut(s) | 94, 267 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 102, 201, 287 |
| SpeI | ACTAGT | 1 cut(s) | 110 |
| Sse9I | AATT | 1 cut(s) | 213 |
| SsiI | CCGC | 1 cut(s) | 142 |
| SspI | AATATT | 1 cut(s) | 43 |
| SspMI | CTAG | 4 cut(s) | 26, 111, 129, 319 |
| StyI | CCWWGG | 1 cut(s) | 179 |
| TaaI | ACNGT | 1 cut(s) | 203 |
| TaqI | TCGA | 1 cut(s) | 285 |
| TasI | AATT | 1 cut(s) | 213 |
| Tru1I | TTAA | 1 cut(s) | 309 |
| Tru9I | TTAA | 1 cut(s) | 309 |
| TscAI | CASTG | 2 cut(s) | 208, 309 |
| TseFI | GTSAC | 3 cut(s) | 28, 236, 269 |
| TseI | GCWGC | 1 cut(s) | 13 |
| Tsp45I | GTSAC | 3 cut(s) | 28, 236, 269 |
| TspDTI | ATGAA | 3 cut(s) | 17, 132, 201 |
| TspRI | CASTG | 2 cut(s) | 208, 309 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 206 |
| XspI | CTAG | 4 cut(s) | 26, 111, 129, 319 |