FvH4_2g06831

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000093
Physical Location & Seq
Reverse (-)
5652396 .. 5655314
2919 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g06831.t1

Sequence Viewer

Length: 1293 bp
ATGGAGCATGTTGATGAAGTTTTGGGTTTTGTAAACAAGGCGGTGCAAAATCCAGAGAATTATCTAGGTGAAATTTCATATGAGAAAAAATTGAGGCAAAGATCTAAAGTCTCTAAAGTTTCTGCTTTAAATTTCATATTAGAAAAAATTGAGGCAAAGATTAAGGGCTGGAATCAATCTACTCTATCTCAGGCAGGCAAGGAAGTAATGGTGAAAGCAGTTGCTATGGCTATTCCAACATACTCTACGTCTATCTTCAAATTCCCAAATTCAGTGTGCAAGAAGAGTAATTCAGCCTTATCAAACTTCTGGGAAGCTTTGGGAACCCCAAAATGTCAAGGAGAGTACATCAATGCAATCATGGCAACTTCTTTTGGTTCTGCGACGGATGAGGACTCTTTGATCTGGAAAGAATCCAACACAGGAGTGCACTCAGTAAAGATCTTCGAGCACCTCCTCGGATCATTCACTTTATTTGGAGAATTCTTTCAGGAGCTATTGCTACAAACCTGGCTAGAAGCAAATGACACATTGCTCTCTCCCCGCTTTGCTAAATTTGTGATACTCATTCAGAATCTATTGAGCACGTCATCTTACTCTGTCTTTGGGCTCAAAAATGCTGGTTTGTGCATCTTCCTACAAGGAAGATGTGATTATGTGTTCAACAAAACTTTACCTGATCCAATCTCAGTTGCTTCAAGAGCTTTCTCAGCAGCGGAAGAGTTTTTAAGAGTCCTCAGAAATTTGTTTTTTCCTAATCATAGCTTGGGGACTGTTAATACTTCAAATCTTCAGTTTTGGTCTCCCCCGAATCAAGGAACATTGAAGTTTAACACAGATGCAGCTTGGGATTCTGATTCCCTCTCTTGTAGTCTTGCTATGGTGGTTCGTAATGAGAAAGGTCTTCTTATTGGCTGTGCCTCAAAGTTAGATGTTGCACCATCTGCCATTGCTGCAAAAGCCAAAGCCATTGATCTTGGTCTCTGTTTAGCTTCTTCTCTCTCCCTCTCCTCTTTTTCGCTGGAATCAGACTCTTTCTCCCTCATTTCGGCTCTTCGAAATCCTTTGTCGCTTGTGGATTGGTTTGCTTCAACCTTGGTCTCAAGAATCAGGCGAAAGACCTCAAGTTTCAAGCATATTTACTGGTCCTGGACCATCAGAATGGCAAACTCGGCTGCGGACTTTGTGGCCTCTTTGTCTTTGCAGAGGGTGTGCTCTGAAGATTGGTCCTCCAACCCTCCATCCTCCCTCATGCGAATTTTACTTTTTGATGCAATTTATCCCCCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

431

Amino Acids

47.57

Weight (kDa)

8.51

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 278 - 398 5.7e-12 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 41, 544, 716, 1178
AclWI GGATC 2 cut(s) 469, 674
AcsI RAATTY 8 cut(s) 72, 130, 260, 268, 482, 554, 742, 1257
AcuI CTGAAG 2 cut(s) 776, 1239
AfaI GTAC 1 cut(s) 347
AfiI CCNNNNNNNGG 2 cut(s) 815, 1048
AgsI TTSAA 7 cut(s) 259, 664, 699, 786, 826, 1092, 1132
AjiI CACGTC 1 cut(s) 588
AjnI CCWGG 2 cut(s) 509, 1148
AleI CACNNNNGTG 1 cut(s) 425
AluBI AGCT 6 cut(s) 317, 496, 704, 765, 845, 992
AluI AGCT 6 cut(s) 317, 496, 704, 765, 845, 992
Alw21I GWGCWC 4 cut(s) 432, 453, 587, 1217
Alw26I GTCTC 4 cut(s) 115, 807, 986, 1105
Alw44I GTGCAC 1 cut(s) 428
AlwI GGATC 2 cut(s) 469, 674
AoxI GGCC 1 cut(s) 1188
ApaLI GTGCAC 1 cut(s) 428
ApeKI GCWGC 4 cut(s) 713, 842, 953, 1175
ApoI RAATTY 8 cut(s) 72, 130, 260, 268, 482, 554, 742, 1257
Asp700I GAANNNNTTC 1 cut(s) 486
AspS9I GGNCC 3 cut(s) 1146, 1152, 1227
AsuHPI GGTGA 2 cut(s) 80, 223
AsuII TTCGAA 1 cut(s) 1057
AvaII GGWCC 3 cut(s) 1146, 1152, 1227
BaeGI GKGCMC 1 cut(s) 432
BanII GRGCYC 1 cut(s) 612
BbsI GAAGAC 1 cut(s) 896
Bbv12I GWGCWC 4 cut(s) 432, 453, 587, 1217
BbvI GCAGC 4 cut(s) 725, 854, 940, 1162
BccI CCATC 3 cut(s) 949, 1163, 1249
BciT130I CCWGG 2 cut(s) 511, 1150
BcoDI GTCTC 4 cut(s) 115, 807, 986, 1105
BfaI CTAG 2 cut(s) 65, 515
BglII AGATCT 2 cut(s) 101, 441
BisI GCNGC 4 cut(s) 714, 843, 954, 1176
BlsI GCNGC 4 cut(s) 715, 844, 955, 1177
Bme1390I CCNGG 2 cut(s) 511, 1150
Bme18I GGWCC 3 cut(s) 1146, 1152, 1227
BmgBI CACGTC 1 cut(s) 588
BmgT120I GGNCC 3 cut(s) 1146, 1152, 1227
BmiI GGNNCC 1 cut(s) 325
BmrFI CCNGG 2 cut(s) 511, 1150
BmsI GCATC 3 cut(s) 639, 829, 1261
BpiI GAAGAC 1 cut(s) 896
Bpu14I TTCGAA 1 cut(s) 1057
BpuEI CTTGAG 2 cut(s) 1087, 1108
BsaI GGTCTC 3 cut(s) 807, 986, 1105
BsaJI CCNNGG 2 cut(s) 457, 1095
BsaXI ACNNNNNCTCC 2 cut(s) 1022, 1052
Bsc4I CCNNNNNNNGG 2 cut(s) 815, 1048
Bse1I ACTGG 1 cut(s) 1148
Bse3DI GCAATG 2 cut(s) 530, 948
BseBI CCWGG 2 cut(s) 511, 1150
BseDI CCNNGG 2 cut(s) 457, 1095
BseGI GGATG 2 cut(s) 394, 1241
BseLI CCNNNNNNNGG 2 cut(s) 815, 1048
BseMI GCAATG 2 cut(s) 530, 948
BseMII CTCAG 5 cut(s) 203, 447, 702, 723, 751
BseNI ACTGG 1 cut(s) 1148
BseRI GAGGAG 2 cut(s) 446, 1000
BseSI GKGCMC 1 cut(s) 432
BseXI GCAGC 4 cut(s) 725, 854, 940, 1162
BshFI GGCC 1 cut(s) 1190
BsiHKAI GWGCWC 4 cut(s) 432, 453, 587, 1217
BslFI GGGAC 1 cut(s) 784
BslI CCNNNNNNNGG 2 cut(s) 815, 1048
BsmAI GTCTC 4 cut(s) 115, 807, 986, 1105
BsmFI GGGAC 1 cut(s) 784
BsnI GGCC 1 cut(s) 1190
Bso31I GGTCTC 3 cut(s) 807, 986, 1105
Bsp119I TTCGAA 1 cut(s) 1057
Bsp1286I GDGCHC 5 cut(s) 432, 453, 587, 612, 1217
Bsp143I GATC 6 cut(s) 101, 402, 441, 461, 679, 973
BspACI CCGC 4 cut(s) 41, 544, 716, 1178
BspANI GGCC 1 cut(s) 1190
BspCNI CTCAG 5 cut(s) 202, 446, 701, 722, 750
BspLI GGNNCC 1 cut(s) 325
BspPI GGATC 2 cut(s) 469, 674
BspQI GCTCTTC 1 cut(s) 1059
BspT104I TTCGAA 1 cut(s) 1057
BspTNI GGTCTC 3 cut(s) 807, 986, 1105
BsrDI GCAATG 2 cut(s) 530, 948
BsrI ACTGG 1 cut(s) 1148
BssECI CCNNGG 2 cut(s) 457, 1095
BssMI GATC 6 cut(s) 101, 402, 441, 461, 679, 973
BssT1I CCWWGG 1 cut(s) 1095
Bst2UI CCWGG 2 cut(s) 511, 1150
Bst4CI ACNGT 1 cut(s) 775
Bst6I CTCTTC 3 cut(s) 278, 714, 1059
BstAPI GCANNNNNTGC 1 cut(s) 944
BstBI TTCGAA 1 cut(s) 1057
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 5 cut(s) 189, 433, 688, 709, 737
BstF5I GGATG 2 cut(s) 394, 1241
BstKTI GATC 6 cut(s) 104, 405, 444, 464, 682, 976
BstMAI GTCTC 4 cut(s) 115, 807, 986, 1105
BstMBI GATC 6 cut(s) 101, 402, 441, 461, 679, 973
BstMWI GCNNNNNNNGC 7 cut(s) 362, 701, 710, 944, 953, 959, 1172
BstNI CCWGG 2 cut(s) 511, 1150
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 2 cut(s) 509, 1148
BstSLI GKGCMC 1 cut(s) 432
BstV1I GCAGC 4 cut(s) 725, 854, 940, 1162
BstV2I GAAGAC 1 cut(s) 896
BstX2I RGATCY 2 cut(s) 101, 441
BstXI CCANNNNNNTGG 1 cut(s) 1162
BstYI RGATCY 2 cut(s) 101, 441
BsuRI GGCC 1 cut(s) 1190
BtrI CACGTC 1 cut(s) 588
BtsCI GGATG 2 cut(s) 394, 1241
BtsIMutI CAGTG 1 cut(s) 279
Cac8I GCNNGC 1 cut(s) 196
Cfr13I GGNCC 3 cut(s) 1146, 1152, 1227
Csp6I GTAC 1 cut(s) 346
CviAII CATG 3 cut(s) 8, 361, 1252
CviQI GTAC 1 cut(s) 346
DdeI CTNAG 5 cut(s) 189, 433, 688, 709, 737
DpnI GATC 6 cut(s) 103, 404, 443, 463, 681, 975
DpnII GATC 6 cut(s) 101, 402, 441, 461, 679, 973
DraI TTTAAA 1 cut(s) 129
Eam1104I CTCTTC 3 cut(s) 278, 714, 1059
EarI CTCTTC 3 cut(s) 278, 714, 1059
Eco130I CCWWGG 1 cut(s) 1095
Eco24I GRGCYC 1 cut(s) 612
Eco31I GGTCTC 3 cut(s) 807, 986, 1105
Eco47I GGWCC 3 cut(s) 1146, 1152, 1227
Eco57I CTGAAG 2 cut(s) 776, 1239
EcoRI GAATTC 1 cut(s) 482
EcoRII CCWGG 2 cut(s) 509, 1148
EcoT14I CCWWGG 1 cut(s) 1095
EcoT38I GRGCYC 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 1095
FaeI CATG 3 cut(s) 11, 364, 1255
FalI AAGNNNNNCTT 2 cut(s) 891, 923
FaqI GGGAC 1 cut(s) 784
FatI CATG 3 cut(s) 7, 360, 1251
FauI CCCGC 1 cut(s) 551
FauNDI CATATG 1 cut(s) 79
Fnu4HI GCNGC 4 cut(s) 714, 843, 954, 1176
FokI GGATG 2 cut(s) 401, 1228
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 4 cut(s) 714, 843, 954, 1176
FspBI CTAG 2 cut(s) 65, 515
GluI GCNGC 4 cut(s) 714, 843, 954, 1176
HaeIII GGCC 1 cut(s) 1190
Hin1II CATG 3 cut(s) 11, 364, 1255
HindIII AAGCTT 1 cut(s) 315
HphI GGTGA 2 cut(s) 80, 223
Hpy166II GTNNAC 2 cut(s) 34, 430
Hpy188I TCNGA 7 cut(s) 461, 573, 740, 856, 1030, 1160, 1219
Hpy188III TCNNGA 5 cut(s) 53, 406, 491, 699, 1104
Hpy8I GTNNAC 2 cut(s) 34, 430
Hpy99I CGWCG 1 cut(s) 388
HpyCH4III ACNGT 1 cut(s) 775
HpyCH4IV ACGT 2 cut(s) 248, 587
HpyF10VI GCNNNNNNNGC 7 cut(s) 362, 701, 710, 944, 953, 959, 1172
HpyF3I CTNAG 5 cut(s) 189, 433, 688, 709, 737
HpySE526I ACGT 2 cut(s) 248, 587
Hsp92II CATG 3 cut(s) 11, 364, 1255
Kzo9I GATC 6 cut(s) 101, 402, 441, 461, 679, 973
LguI GCTCTTC 1 cut(s) 1059
LmnI GCTCC 2 cut(s) 4, 493
Lsp1109I GCAGC 4 cut(s) 725, 854, 940, 1162
LweI GCATC 3 cut(s) 639, 829, 1261
MaeI CTAG 2 cut(s) 65, 515
MaeII ACGT 2 cut(s) 248, 587
MalI GATC 6 cut(s) 103, 404, 443, 463, 681, 975
MboI GATC 6 cut(s) 101, 402, 441, 461, 679, 973
MflI RGATCY 2 cut(s) 101, 441
MhlI GDGCHC 5 cut(s) 432, 453, 587, 612, 1217
MlyI GAGTC 3 cut(s) 389, 741, 1025
MmeI TCCRAC 3 cut(s) 260, 441, 1257
MroXI GAANNNNTTC 1 cut(s) 486
MseI TTAA 6 cut(s) 128, 162, 728, 777, 831, 1291
MslI CAYNNNNRTG 3 cut(s) 12, 425, 1160
MspA1I CMGCKG 1 cut(s) 716
MspR9I CCNGG 2 cut(s) 511, 1150
MvaI CCWGG 2 cut(s) 511, 1150
MwoI GCNNNNNNNGC 7 cut(s) 362, 701, 710, 944, 953, 959, 1172
NdeI CATATG 1 cut(s) 79
NdeII GATC 6 cut(s) 101, 402, 441, 461, 679, 973
NlaIII CATG 3 cut(s) 11, 364, 1255
NlaIV GGNNCC 1 cut(s) 325
NmeAIII GCCGAG 1 cut(s) 1151
NspI RCATGY 1 cut(s) 11
NspV TTCGAA 1 cut(s) 1057
OliI CACNNNNGTG 1 cut(s) 425
PciSI GCTCTTC 1 cut(s) 1059
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 8 cut(s) 172, 413, 574, 811, 851, 857, 1025, 1107
PfoI TCCNGGA 1 cut(s) 1148
PkrI GCNGC 4 cut(s) 715, 844, 955, 1177
PleI GAGTC 3 cut(s) 389, 740, 1025
PpsI GAGTC 3 cut(s) 389, 740, 1025
Psp6I CCWGG 2 cut(s) 509, 1148
PspGI CCWGG 2 cut(s) 509, 1148
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 3 cut(s) 1146, 1152, 1227
PsuI RGATCY 2 cut(s) 101, 441
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 3 cut(s) 12, 425, 1160
SapI GCTCTTC 1 cut(s) 1059
SaqAI TTAA 6 cut(s) 128, 162, 728, 777, 831, 1291
SatI GCNGC 4 cut(s) 714, 843, 954, 1176
Sau3AI GATC 6 cut(s) 101, 402, 441, 461, 679, 973
Sau96I GGNCC 3 cut(s) 1146, 1152, 1227
SchI GAGTC 3 cut(s) 389, 741, 1025
ScrFI CCNGG 2 cut(s) 511, 1150
SduI GDGCHC 5 cut(s) 432, 453, 587, 612, 1217
SfaNI GCATC 3 cut(s) 639, 829, 1261
SfuI TTCGAA 1 cut(s) 1057
SinI GGWCC 3 cut(s) 1146, 1152, 1227
SmiMI CAYNNNNRTG 3 cut(s) 12, 425, 1160
SmlI CTYRAG 2 cut(s) 1102, 1123
SmoI CTYRAG 2 cut(s) 1102, 1123
SsiI CCGC 4 cut(s) 41, 544, 716, 1178
SspMI CTAG 2 cut(s) 65, 515
StyD4I CCNGG 2 cut(s) 509, 1148
StyI CCWWGG 1 cut(s) 1095
TaaI ACNGT 1 cut(s) 775
TaiI ACGT 2 cut(s) 251, 590
TaqI TCGA 2 cut(s) 447, 1057
TatI WGTACW 1 cut(s) 345
TfiI GAWTC 8 cut(s) 172, 413, 574, 811, 851, 857, 1025, 1107
Tru1I TTAA 6 cut(s) 128, 162, 728, 777, 831, 1291
Tru9I TTAA 6 cut(s) 128, 162, 728, 777, 831, 1291
TscAI CASTG 1 cut(s) 279
TseI GCWGC 4 cut(s) 713, 842, 953, 1175
TspDTI ATGAA 3 cut(s) 30, 66, 124
TspGWI ACGGA 1 cut(s) 401
TspRI CASTG 1 cut(s) 279
VneI GTGCAC 1 cut(s) 428
VpaK11BI GGWCC 3 cut(s) 1146, 1152, 1227
XapI RAATTY 8 cut(s) 72, 130, 260, 268, 482, 554, 742, 1257
XceI RCATGY 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 486
XspI CTAG 2 cut(s) 65, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.