Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 1 - 80 | 3.7e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 17 |
| AciI | CCGC | 2 cut(s) | 17, 278 |
| AcsI | RAATTY | 1 cut(s) | 106 |
| AfaI | GTAC | 1 cut(s) | 191 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 304 |
| AgsI | TTSAA | 4 cut(s) | 47, 52, 106, 111 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 261 |
| AjnI | CCWGG | 1 cut(s) | 24 |
| AluBI | AGCT | 3 cut(s) | 227, 236, 351 |
| AluI | AGCT | 3 cut(s) | 227, 236, 351 |
| Ama87I | CYCGRG | 2 cut(s) | 12, 207 |
| ApeKI | GCWGC | 1 cut(s) | 236 |
| ApoI | RAATTY | 1 cut(s) | 106 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 201 |
| AsuC2I | CCSGG | 3 cut(s) | 38, 208, 209 |
| AsuNHI | GCTAGC | 1 cut(s) | 347 |
| AvaI | CYCGRG | 2 cut(s) | 12, 207 |
| BanII | GRGCYC | 1 cut(s) | 43 |
| BbvI | GCAGC | 1 cut(s) | 223 |
| BccI | CCATC | 3 cut(s) | 156, 253, 267 |
| BciT130I | CCWGG | 1 cut(s) | 26 |
| BcnI | CCSGG | 3 cut(s) | 38, 208, 209 |
| BfaI | CTAG | 1 cut(s) | 348 |
| BisI | GCNGC | 1 cut(s) | 237 |
| BlsI | GCNGC | 1 cut(s) | 238 |
| Bme1390I | CCNGG | 4 cut(s) | 26, 38, 208, 209 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 261 |
| BmeT110I | CYCGRG | 2 cut(s) | 12, 207 |
| BmrFI | CCNGG | 4 cut(s) | 26, 38, 208, 209 |
| BmrI | ACTGGG | 1 cut(s) | 202 |
| BmtI | GCTAGC | 1 cut(s) | 351 |
| BmuI | ACTGGG | 1 cut(s) | 202 |
| BplI | GAGNNNNNCTC | 3 cut(s) | 38, 124, 156 |
| BpmI | CTGGAG | 1 cut(s) | 151 |
| BpuMI | CCSGG | 3 cut(s) | 38, 208, 209 |
| BsaJI | CCNNGG | 3 cut(s) | 25, 206, 207 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 304 |
| Bse1I | ACTGG | 2 cut(s) | 134, 197 |
| Bse3DI | GCAATG | 1 cut(s) | 239 |
| BseBI | CCWGG | 1 cut(s) | 26 |
| BseDI | CCNNGG | 3 cut(s) | 25, 206, 207 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 304 |
| BseMI | GCAATG | 1 cut(s) | 239 |
| BseMII | CTCAG | 2 cut(s) | 155, 325 |
| BseNI | ACTGG | 2 cut(s) | 134, 197 |
| BseXI | GCAGC | 1 cut(s) | 223 |
| BsiHKCI | CYCGRG | 2 cut(s) | 12, 207 |
| BsiSI | CCGG | 2 cut(s) | 37, 208 |
| BslFI | GGGAC | 1 cut(s) | 280 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 304 |
| BsmFI | GGGAC | 1 cut(s) | 280 |
| BsoBI | CYCGRG | 2 cut(s) | 12, 207 |
| Bsp1286I | GDGCHC | 1 cut(s) | 43 |
| BspACI | CCGC | 2 cut(s) | 17, 278 |
| BspCNI | CTCAG | 2 cut(s) | 154, 324 |
| BspHI | TCATGA | 1 cut(s) | 229 |
| BspOI | GCTAGC | 1 cut(s) | 351 |
| BsrBI | CCGCTC | 1 cut(s) | 17 |
| BsrDI | GCAATG | 1 cut(s) | 239 |
| BsrI | ACTGG | 2 cut(s) | 134, 197 |
| BssECI | CCNNGG | 3 cut(s) | 25, 206, 207 |
| Bst2UI | CCWGG | 1 cut(s) | 26 |
| Bst4CI | ACNGT | 2 cut(s) | 221, 294 |
| BstC8I | GCNNGC | 1 cut(s) | 349 |
| BstDEI | CTNAG | 2 cut(s) | 141, 311 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 233 |
| BstNI | CCWGG | 1 cut(s) | 26 |
| BstSCI | CCNGG | 4 cut(s) | 24, 36, 206, 207 |
| BstV1I | GCAGC | 1 cut(s) | 223 |
| Cac8I | GCNNGC | 1 cut(s) | 349 |
| CciI | TCATGA | 1 cut(s) | 229 |
| Cfr9I | CCCGGG | 1 cut(s) | 207 |
| Csp6I | GTAC | 1 cut(s) | 190 |
| CviAII | CATG | 3 cut(s) | 31, 230, 330 |
| CviJI | RGCY | 6 cut(s) | 11, 41, 227, 236, 347, 351 |
| CviKI_1 | RGCY | 6 cut(s) | 11, 41, 227, 236, 347, 351 |
| CviQI | GTAC | 1 cut(s) | 190 |
| DdeI | CTNAG | 2 cut(s) | 141, 311 |
| DriI | GACNNNNNGTC | 1 cut(s) | 261 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 261 |
| EciI | GGCGGA | 1 cut(s) | 293 |
| Eco24I | GRGCYC | 1 cut(s) | 43 |
| Eco88I | CYCGRG | 2 cut(s) | 12, 207 |
| EcoRI | GAATTC | 1 cut(s) | 106 |
| EcoRII | CCWGG | 1 cut(s) | 24 |
| EcoT38I | GRGCYC | 1 cut(s) | 43 |
| FaeI | CATG | 3 cut(s) | 34, 233, 333 |
| FaiI | YATR | 4 cut(s) | 32, 231, 252, 331 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 161, 193 |
| FaqI | GGGAC | 1 cut(s) | 280 |
| FatI | CATG | 3 cut(s) | 30, 229, 329 |
| Fnu4HI | GCNGC | 1 cut(s) | 237 |
| FriOI | GRGCYC | 1 cut(s) | 43 |
| Fsp4HI | GCNGC | 1 cut(s) | 237 |
| FspBI | CTAG | 1 cut(s) | 348 |
| GluI | GCNGC | 1 cut(s) | 237 |
| GsuI | CTGGAG | 1 cut(s) | 151 |
| HapII | CCGG | 2 cut(s) | 37, 208 |
| Hin1II | CATG | 3 cut(s) | 34, 233, 333 |
| HinfI | GANTC | 4 cut(s) | 52, 70, 80, 202 |
| HpaII | CCGG | 2 cut(s) | 37, 208 |
| Hpy166II | GTNNAC | 1 cut(s) | 190 |
| Hpy188I | TCNGA | 4 cut(s) | 57, 79, 144, 161 |
| Hpy188III | TCNNGA | 3 cut(s) | 44, 230, 313 |
| Hpy8I | GTNNAC | 1 cut(s) | 190 |
| HpyCH4III | ACNGT | 2 cut(s) | 221, 294 |
| HpyCH4V | TGCA | 3 cut(s) | 123, 239, 270 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 233 |
| HpyF3I | CTNAG | 2 cut(s) | 141, 311 |
| Hsp92II | CATG | 3 cut(s) | 34, 233, 333 |
| LpnPI | CCDG | 7 cut(s) | 11, 38, 50, 115, 178, 221, 298 |
| Lsp1109I | GCAGC | 1 cut(s) | 223 |
| MaeI | CTAG | 1 cut(s) | 348 |
| MbiI | CCGCTC | 1 cut(s) | 17 |
| MhlI | GDGCHC | 1 cut(s) | 43 |
| MluCI | AATT | 4 cut(s) | 47, 93, 106, 172 |
| MmeI | TCCRAC | 1 cut(s) | 57 |
| MnlI | CCTC | 4 cut(s) | 126, 145, 308, 337 |
| MroXI | GAANNNNTTC | 1 cut(s) | 201 |
| MspI | CCGG | 2 cut(s) | 37, 208 |
| MspR9I | CCNGG | 4 cut(s) | 26, 38, 208, 209 |
| MvaI | CCWGG | 1 cut(s) | 26 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 233 |
| NciI | CCSGG | 3 cut(s) | 38, 208, 209 |
| NheI | GCTAGC | 1 cut(s) | 347 |
| NlaIII | CATG | 3 cut(s) | 34, 233, 333 |
| PaeR7I | CTCGAG | 1 cut(s) | 12 |
| PagI | TCATGA | 1 cut(s) | 229 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 290 |
| PdmI | GAANNNNTTC | 1 cut(s) | 201 |
| PfeI | GAWTC | 4 cut(s) | 52, 70, 80, 202 |
| PkrI | GCNGC | 1 cut(s) | 238 |
| Psp6I | CCWGG | 1 cut(s) | 24 |
| PspGI | CCWGG | 1 cut(s) | 24 |
| PspXI | VCTCGAGB | 1 cut(s) | 12 |
| RsaI | GTAC | 1 cut(s) | 191 |
| RsaNI | GTAC | 1 cut(s) | 190 |
| SatI | GCNGC | 1 cut(s) | 237 |
| ScrFI | CCNGG | 4 cut(s) | 26, 38, 208, 209 |
| SduI | GDGCHC | 1 cut(s) | 43 |
| SetI | ASST | 4 cut(s) | 189, 229, 238, 353 |
| Sfr274I | CTCGAG | 1 cut(s) | 12 |
| SlaI | CTCGAG | 1 cut(s) | 12 |
| SmaI | CCCGGG | 1 cut(s) | 209 |
| SmlI | CTYRAG | 1 cut(s) | 12 |
| SmoI | CTYRAG | 1 cut(s) | 12 |
| Sse9I | AATT | 4 cut(s) | 47, 93, 106, 172 |
| SsiI | CCGC | 2 cut(s) | 17, 278 |
| SspMI | CTAG | 1 cut(s) | 348 |
| StyD4I | CCNGG | 4 cut(s) | 24, 36, 206, 207 |
| TaaI | ACNGT | 2 cut(s) | 221, 294 |
| TaqI | TCGA | 1 cut(s) | 13 |
| TasI | AATT | 4 cut(s) | 47, 93, 106, 172 |
| TatI | WGTACW | 1 cut(s) | 189 |
| TfiI | GAWTC | 4 cut(s) | 52, 70, 80, 202 |
| TseI | GCWGC | 1 cut(s) | 236 |
| TspDTI | ATGAA | 2 cut(s) | 47, 246 |
| TspGWI | ACGGA | 2 cut(s) | 113, 336 |
| TspMI | CCCGGG | 1 cut(s) | 207 |
| XapI | RAATTY | 1 cut(s) | 106 |
| XhoI | CTCGAG | 1 cut(s) | 12 |
| XmaI | CCCGGG | 1 cut(s) | 207 |
| XmnI | GAANNNNTTC | 1 cut(s) | 201 |
| XspI | CTAG | 1 cut(s) | 348 |