FvH4_1g23791

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000093
Physical Location & Seq
Reverse (-)
15649212 .. 15650687
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23791.t1

Sequence Viewer

Length: 522 bp
ATGTACAAAAAATGGATGTTTGTTACATACTATAGTGCTTATATTCAGCAGATAAATTTTGATGCAACTTGGGCAATGGATACTCACCTAGTAGGTATTGGAGTTGTTGCAAGGAATTGCCATGGTGATTTAATTGATGGTGTTCATACGACTTGTCGAGCGGGTTCGGCTCTTGAAGCGGAAGCTCGCGCGGGTATTGAAGCTTGTTCTCTTGCCGAAAAGCTCACCCCTTTTCCAATCATCATCGAATCTGATTCGAAATGCTTGATTGATGCTATCAATTCTCCCTTCAATTGCAATATCTGGAGCATCTACCCTGCTGTTGCAAAGATCAAGAACTCTCCCTCTTTCTGGCAAAGTTTTGTTTGGTCTTGGATCTCAAGGAAAGCGAATTCGGCGGCGGATAACCTCGCCTCGCTTACGGTGCGGAGAATGTGCCCGGACGTCTGGATTGACCGTCCGCCATCCTCCCTTGTTGGTATTCTCTCGAGAGATGGGTTGCCTTGCCCTCCATCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

174

Amino Acids

19.13

Weight (kDa)

6.8

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 19 - 139 4e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 447
AccBSI CCGCTC 1 cut(s) 161
AccII CGCG 2 cut(s) 189, 191
AciI CCGC 7 cut(s) 161, 179, 191, 398, 401, 427, 461
AclWI GGATC 1 cut(s) 383
AcsI RAATTY 2 cut(s) 55, 391
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 351
AgsI TTSAA 3 cut(s) 176, 200, 292
AluBI AGCT 3 cut(s) 185, 203, 223
AluI AGCT 3 cut(s) 185, 203, 223
AlwI GGATC 1 cut(s) 383
Ama87I CYCGRG 1 cut(s) 487
ApoI RAATTY 2 cut(s) 55, 391
AspLEI GCGC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 440
AsuHPI GGTGA 3 cut(s) 77, 137, 217
AsuII TTCGAA 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 487
BaeGI GKGCMC 1 cut(s) 440
BccI CCATC 4 cut(s) 131, 472, 488, 520
BciVI GTATCC 1 cut(s) 73
BcnI CCSGG 1 cut(s) 440
BfaI CTAG 1 cut(s) 89
BfmI CTRYAG 1 cut(s) 31
BfuI GTATCC 1 cut(s) 73
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 440
BmeT110I CYCGRG 1 cut(s) 487
BmrFI CCNGG 1 cut(s) 440
BmsI GCATC 3 cut(s) 52, 262, 318
BpmI CTGGAG 1 cut(s) 325
Bpu14I TTCGAA 1 cut(s) 257
BpuEI CTTGAG 1 cut(s) 364
BpuMI CCSGG 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 121
BseGI GGATG 2 cut(s) 21, 464
BseLI CCNNNNNNNGG 1 cut(s) 351
BseMI GCAATG 1 cut(s) 81
BseSI GKGCMC 1 cut(s) 440
Bsh1236I CGCG 2 cut(s) 189, 191
BsiHKCI CYCGRG 1 cut(s) 487
BsiSI CCGG 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 351
BsoBI CYCGRG 1 cut(s) 487
Bsp119I TTCGAA 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 440
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 330, 375
Bsp19I CCATGG 1 cut(s) 121
BspACI CCGC 7 cut(s) 161, 179, 191, 398, 401, 427, 461
BspFNI CGCG 2 cut(s) 189, 191
BspHI TCATGA 1 cut(s) 518
BspPI GGATC 1 cut(s) 383
BspT104I TTCGAA 1 cut(s) 257
BsrBI CCGCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 81
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 121
BssMI GATC 2 cut(s) 330, 375
BssNI GRCGYC 1 cut(s) 444
BssT1I CCWWGG 1 cut(s) 121
Bst4CI ACNGT 2 cut(s) 424, 458
BstACI GRCGYC 1 cut(s) 444
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 187
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 2 cut(s) 21, 464
BstFNI CGCG 2 cut(s) 189, 191
BstHHI GCGC 1 cut(s) 191
BstKTI GATC 2 cut(s) 333, 378
BstMBI GATC 2 cut(s) 330, 375
BstMWI GCNNNNNNNGC 5 cut(s) 71, 167, 176, 395, 424
BstSCI CCNGG 1 cut(s) 438
BstSFI CTRYAG 1 cut(s) 31
BstSLI GKGCMC 1 cut(s) 440
BstUI CGCG 2 cut(s) 189, 191
BstX2I RGATCY 1 cut(s) 375
BstYI RGATCY 1 cut(s) 375
BsuI GTATCC 1 cut(s) 73
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 2 cut(s) 21, 464
Cac8I GCNNGC 1 cut(s) 187
CciI TCATGA 1 cut(s) 518
CfoI GCGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 122, 519
CviJI RGCY 4 cut(s) 170, 185, 203, 223
CviKI_1 RGCY 4 cut(s) 170, 185, 203, 223
CviQI GTAC 1 cut(s) 4
DpnI GATC 2 cut(s) 332, 377
DpnII GATC 2 cut(s) 330, 375
EciI GGCGGA 2 cut(s) 416, 450
Eco130I CCWWGG 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 487
EcoRI GAATTC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 2 cut(s) 125, 522
FaiI YATR 6 cut(s) 28, 33, 42, 123, 147, 520
FatI CATG 2 cut(s) 121, 518
FauI CCCGC 2 cut(s) 154, 184
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 2 cut(s) 28, 451
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 1 cut(s) 89
GlaI GCGC 1 cut(s) 190
GluI GCNGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 325
HapII CCGG 1 cut(s) 440
HhaI GCGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 2 cut(s) 125, 522
Hin6I GCGC 1 cut(s) 189
HinP1I GCGC 1 cut(s) 189
HindIII AAGCTT 1 cut(s) 201
HinfI GANTC 2 cut(s) 248, 254
HpaII CCGG 1 cut(s) 440
HphI GGTGA 3 cut(s) 77, 137, 217
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 7 cut(s) 173, 304, 334, 448, 487, 489, 519
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 2 cut(s) 424, 458
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 4 cut(s) 65, 110, 297, 326
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 167, 176, 395, 424
HpySE526I ACGT 1 cut(s) 444
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 2 cut(s) 125, 522
HspAI GCGC 1 cut(s) 189
Kzo9I GATC 2 cut(s) 330, 375
LmnI GCTCC 1 cut(s) 306
LpnPI CCDG 5 cut(s) 289, 330, 337, 433, 453
LweI GCATC 3 cut(s) 52, 262, 318
MaeI CTAG 1 cut(s) 89
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 1 cut(s) 22
MalI GATC 2 cut(s) 332, 377
MbiI CCGCTC 1 cut(s) 161
MboI GATC 2 cut(s) 330, 375
MboII GAAGA 1 cut(s) 507
MfeI CAATTG 1 cut(s) 292
MflI RGATCY 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 440
MluCI AATT 6 cut(s) 55, 115, 132, 280, 292, 391
MnlI CCTC 5 cut(s) 355, 419, 424, 478, 519
MseI TTAA 1 cut(s) 131
MslI CAYNNNNRTG 1 cut(s) 517
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 1 cut(s) 440
MunI CAATTG 1 cut(s) 292
MvnI CGCG 2 cut(s) 189, 191
MwoI GCNNNNNNNGC 5 cut(s) 71, 167, 176, 395, 424
NciI CCSGG 1 cut(s) 440
NcoI CCATGG 1 cut(s) 121
NdeII GATC 2 cut(s) 330, 375
NlaIII CATG 2 cut(s) 125, 522
NspV TTCGAA 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 487
PagI TCATGA 1 cut(s) 518
PfeI GAWTC 2 cut(s) 248, 254
PkrI GCNGC 1 cut(s) 400
PsuI RGATCY 1 cut(s) 375
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 517
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 2 cut(s) 330, 375
ScrFI CCNGG 1 cut(s) 440
SduI GDGCHC 1 cut(s) 440
SetI ASST 7 cut(s) 90, 97, 187, 205, 225, 411, 447
SfaNI GCATC 3 cut(s) 52, 262, 318
SfcI CTRYAG 1 cut(s) 31
Sfr274I CTCGAG 1 cut(s) 487
SfuI TTCGAA 1 cut(s) 257
SlaI CTCGAG 1 cut(s) 487
SmiMI CAYNNNNRTG 1 cut(s) 517
SmlI CTYRAG 2 cut(s) 379, 487
SmoI CTYRAG 2 cut(s) 379, 487
Sse9I AATT 6 cut(s) 55, 115, 132, 280, 292, 391
SsiI CCGC 7 cut(s) 161, 179, 191, 398, 401, 427, 461
SspMI CTAG 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 438
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 2 cut(s) 424, 458
TaiI ACGT 1 cut(s) 447
TaqI TCGA 4 cut(s) 157, 246, 257, 488
TasI AATT 6 cut(s) 55, 115, 132, 280, 292, 391
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 401
TfiI GAWTC 2 cut(s) 248, 254
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 134, 507
XapI RAATTY 2 cut(s) 55, 391
XhoI CTCGAG 1 cut(s) 487
XspI CTAG 1 cut(s) 89
ZraI GACGTC 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.