ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 167 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 362 |
| AccII | CGCG | 1 cut(s) | 302 |
| AciI | CCGC | 1 cut(s) | 302 |
| AclWI | GGATC | 3 cut(s) | 312, 387, 400 |
| AcyI | GRCGYC | 1 cut(s) | 168 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 362, 416 |
| AgsI | TTSAA | 2 cut(s) | 25, 50 |
| AjnI | CCWGG | 1 cut(s) | 388 |
| AluBI | AGCT | 1 cut(s) | 220 |
| AluI | AGCT | 1 cut(s) | 220 |
| Alw21I | GWGCWC | 1 cut(s) | 99 |
| Alw26I | GTCTC | 1 cut(s) | 452 |
| AlwI | GGATC | 3 cut(s) | 312, 387, 400 |
| AoxI | GGCC | 1 cut(s) | 399 |
| ApeKI | GCWGC | 3 cut(s) | 103, 124, 217 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 290, 322 |
| AspA2I | CCTAGG | 1 cut(s) | 415 |
| AspLEI | GCGC | 2 cut(s) | 124, 170 |
| AspS9I | GGNCC | 2 cut(s) | 143, 225 |
| AsuHPI | GGTGA | 1 cut(s) | 194 |
| AvaII | GGWCC | 2 cut(s) | 143, 225 |
| AvrII | CCTAGG | 1 cut(s) | 415 |
| BamHI | GGATCC | 1 cut(s) | 392 |
| BanI | GGYRCC | 1 cut(s) | 167 |
| BbsI | GAAGAC | 3 cut(s) | 65, 246, 298 |
| Bbv12I | GWGCWC | 1 cut(s) | 99 |
| BbvI | GCAGC | 3 cut(s) | 90, 136, 229 |
| BccI | CCATC | 1 cut(s) | 337 |
| BciT130I | CCWGG | 1 cut(s) | 390 |
| BcoDI | GTCTC | 1 cut(s) | 452 |
| BfaI | CTAG | 1 cut(s) | 416 |
| BfoI | RGCGCY | 1 cut(s) | 171 |
| BisI | GCNGC | 3 cut(s) | 104, 125, 218 |
| BlnI | CCTAGG | 1 cut(s) | 415 |
| BlsI | GCNGC | 3 cut(s) | 105, 126, 219 |
| Bme1390I | CCNGG | 1 cut(s) | 390 |
| Bme18I | GGWCC | 2 cut(s) | 143, 225 |
| BmgT120I | GGNCC | 2 cut(s) | 143, 225 |
| BmiI | GGNNCC | 3 cut(s) | 169, 226, 394 |
| BmrFI | CCNGG | 1 cut(s) | 390 |
| BmsI | GCATC | 2 cut(s) | 284, 369 |
| BpiI | GAAGAC | 3 cut(s) | 65, 246, 298 |
| BpmI | CTGGAG | 1 cut(s) | 372 |
| BsaHI | GRCGYC | 1 cut(s) | 168 |
| BsaI | GGTCTC | 1 cut(s) | 452 |
| BsaJI | CCNNGG | 3 cut(s) | 116, 396, 415 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 362, 416 |
| Bse1I | ACTGG | 2 cut(s) | 197, 356 |
| BseBI | CCWGG | 1 cut(s) | 390 |
| BseDI | CCNNGG | 3 cut(s) | 116, 396, 415 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 362, 416 |
| BseMII | CTCAG | 1 cut(s) | 222 |
| BseNI | ACTGG | 2 cut(s) | 197, 356 |
| BseRI | GAGGAG | 3 cut(s) | 440, 443, 446 |
| BseXI | GCAGC | 3 cut(s) | 90, 136, 229 |
| BseYI | CCCAGC | 1 cut(s) | 220 |
| Bsh1236I | CGCG | 1 cut(s) | 302 |
| BshFI | GGCC | 1 cut(s) | 401 |
| BshNI | GGYRCC | 1 cut(s) | 167 |
| BsiHKAI | GWGCWC | 1 cut(s) | 99 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 362, 416 |
| BsmAI | GTCTC | 1 cut(s) | 452 |
| BsmI | GAATGC | 1 cut(s) | 153 |
| BsnI | GGCC | 1 cut(s) | 401 |
| Bso31I | GGTCTC | 1 cut(s) | 452 |
| Bsp1286I | GDGCHC | 1 cut(s) | 99 |
| Bsp143I | GATC | 3 cut(s) | 31, 317, 392 |
| Bsp19I | CCATGG | 1 cut(s) | 396 |
| BspACI | CCGC | 1 cut(s) | 302 |
| BspANI | GGCC | 1 cut(s) | 401 |
| BspCNI | CTCAG | 1 cut(s) | 223 |
| BspFNI | CGCG | 1 cut(s) | 302 |
| BspLI | GGNNCC | 3 cut(s) | 169, 226, 394 |
| BspPI | GGATC | 3 cut(s) | 312, 387, 400 |
| BspT107I | GGYRCC | 1 cut(s) | 167 |
| BspTNI | GGTCTC | 1 cut(s) | 452 |
| BsrI | ACTGG | 2 cut(s) | 197, 356 |
| BssECI | CCNNGG | 3 cut(s) | 116, 396, 415 |
| BssMI | GATC | 3 cut(s) | 31, 317, 392 |
| BssNI | GRCGYC | 1 cut(s) | 168 |
| BssT1I | CCWWGG | 2 cut(s) | 396, 415 |
| Bst2UI | CCWGG | 1 cut(s) | 390 |
| BstACI | GRCGYC | 1 cut(s) | 168 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 103 |
| BstDEI | CTNAG | 2 cut(s) | 231, 237 |
| BstDSI | CCRYGG | 2 cut(s) | 116, 396 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 414 |
| BstFNI | CGCG | 1 cut(s) | 302 |
| BstH2I | RGCGCY | 1 cut(s) | 171 |
| BstHHI | GCGC | 2 cut(s) | 124, 170 |
| BstKTI | GATC | 3 cut(s) | 34, 320, 395 |
| BstMAI | GTCTC | 1 cut(s) | 452 |
| BstMBI | GATC | 3 cut(s) | 31, 317, 392 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 103, 367 |
| BstNI | CCWGG | 1 cut(s) | 390 |
| BstNSI | RCATGY | 1 cut(s) | 103 |
| BstSCI | CCNGG | 1 cut(s) | 388 |
| BstUI | CGCG | 1 cut(s) | 302 |
| BstV1I | GCAGC | 3 cut(s) | 90, 136, 229 |
| BstV2I | GAAGAC | 3 cut(s) | 65, 246, 298 |
| BstX2I | RGATCY | 1 cut(s) | 392 |
| BstYI | RGATCY | 1 cut(s) | 392 |
| BsuRI | GGCC | 1 cut(s) | 401 |
| BtgI | CCRYGG | 2 cut(s) | 116, 396 |
| BtsIMutI | CAGTG | 1 cut(s) | 363 |
| CfoI | GCGC | 2 cut(s) | 124, 170 |
| Cfr13I | GGNCC | 2 cut(s) | 143, 225 |
| CseI | GACGC | 1 cut(s) | 308 |
| CviAII | CATG | 3 cut(s) | 57, 100, 397 |
| CviJI | RGCY | 7 cut(s) | 127, 220, 263, 290, 370, 401, 425 |
| CviKI_1 | RGCY | 7 cut(s) | 127, 220, 263, 290, 370, 401, 425 |
| DdeI | CTNAG | 2 cut(s) | 231, 237 |
| DinI | GGCGCC | 1 cut(s) | 169 |
| DpnI | GATC | 3 cut(s) | 33, 319, 394 |
| DpnII | GATC | 3 cut(s) | 31, 317, 392 |
| Eco130I | CCWWGG | 2 cut(s) | 396, 415 |
| Eco31I | GGTCTC | 1 cut(s) | 452 |
| Eco47I | GGWCC | 2 cut(s) | 143, 225 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 414 |
| EcoO109I | RGGNCCY | 1 cut(s) | 225 |
| EcoRII | CCWGG | 1 cut(s) | 388 |
| EcoT14I | CCWWGG | 2 cut(s) | 396, 415 |
| EgeI | GGCGCC | 1 cut(s) | 169 |
| EheI | GGCGCC | 1 cut(s) | 169 |
| ErhI | CCWWGG | 2 cut(s) | 396, 415 |
| FaeI | CATG | 3 cut(s) | 60, 103, 400 |
| FaiI | YATR | 5 cut(s) | 30, 58, 101, 112, 398 |
| FatI | CATG | 3 cut(s) | 56, 99, 396 |
| Fnu4HI | GCNGC | 3 cut(s) | 104, 125, 218 |
| Fsp4HI | GCNGC | 3 cut(s) | 104, 125, 218 |
| FspBI | CTAG | 1 cut(s) | 416 |
| GlaI | GCGC | 2 cut(s) | 123, 169 |
| GluI | GCNGC | 3 cut(s) | 104, 125, 218 |
| GsaI | CCCAGC | 1 cut(s) | 224 |
| GsuI | CTGGAG | 1 cut(s) | 372 |
| HaeII | RGCGCY | 1 cut(s) | 171 |
| HaeIII | GGCC | 1 cut(s) | 401 |
| HgaI | GACGC | 1 cut(s) | 308 |
| HhaI | GCGC | 2 cut(s) | 124, 170 |
| Hin1I | GRCGYC | 1 cut(s) | 168 |
| Hin1II | CATG | 3 cut(s) | 60, 103, 400 |
| Hin6I | GCGC | 2 cut(s) | 122, 168 |
| HinP1I | GCGC | 2 cut(s) | 122, 168 |
| HinfI | GANTC | 2 cut(s) | 86, 233 |
| HphI | GGTGA | 1 cut(s) | 194 |
| Hpy188I | TCNGA | 2 cut(s) | 85, 232 |
| Hpy188III | TCNNGA | 1 cut(s) | 283 |
| Hpy99I | CGWCG | 2 cut(s) | 302, 314 |
| HpyAV | CCTTC | 2 cut(s) | 333, 470 |
| HpyCH4V | TGCA | 2 cut(s) | 153, 217 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 103, 367 |
| HpyF3I | CTNAG | 2 cut(s) | 231, 237 |
| Hsp92I | GRCGYC | 1 cut(s) | 168 |
| Hsp92II | CATG | 3 cut(s) | 60, 103, 400 |
| HspAI | GCGC | 2 cut(s) | 122, 168 |
| KasI | GGCGCC | 1 cut(s) | 167 |
| Kzo9I | GATC | 3 cut(s) | 31, 317, 392 |
| LmnI | GCTCC | 2 cut(s) | 111, 411 |
| Lsp1109I | GCAGC | 3 cut(s) | 90, 136, 229 |
| LweI | GCATC | 2 cut(s) | 284, 369 |
| MaeI | CTAG | 1 cut(s) | 416 |
| MalI | GATC | 3 cut(s) | 33, 319, 394 |
| MboI | GATC | 3 cut(s) | 31, 317, 392 |
| MboII | GAAGA | 4 cut(s) | 65, 68, 246, 298 |
| MflI | RGATCY | 1 cut(s) | 392 |
| MhlI | GDGCHC | 1 cut(s) | 99 |
| MluCI | AATT | 1 cut(s) | 36 |
| Mly113I | GGCGCC | 1 cut(s) | 168 |
| MlyI | GAGTC | 1 cut(s) | 242 |
| MnlI | CCTC | 9 cut(s) | 156, 181, 190, 238, 420, 429, 461, 464, 467 |
| MslI | CAYNNNNRTG | 1 cut(s) | 431 |
| MspA1I | CMGCKG | 1 cut(s) | 220 |
| MspR9I | CCNGG | 1 cut(s) | 390 |
| Mva1269I | GAATGC | 1 cut(s) | 153 |
| MvaI | CCWGG | 1 cut(s) | 390 |
| MvnI | CGCG | 1 cut(s) | 302 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 103, 367 |
| NarI | GGCGCC | 1 cut(s) | 168 |
| NcoI | CCATGG | 1 cut(s) | 396 |
| NdeII | GATC | 3 cut(s) | 31, 317, 392 |
| NlaIII | CATG | 3 cut(s) | 60, 103, 400 |
| NlaIV | GGNNCC | 3 cut(s) | 169, 226, 394 |
| NspI | RCATGY | 1 cut(s) | 103 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 306 |
| PctI | GAATGC | 1 cut(s) | 153 |
| PfeI | GAWTC | 1 cut(s) | 86 |
| PflFI | GACNNNGTC | 1 cut(s) | 302 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 362 |
| PfoI | TCCNGGA | 1 cut(s) | 388 |
| PkrI | GCNGC | 3 cut(s) | 105, 126, 219 |
| PleI | GAGTC | 1 cut(s) | 241 |
| PluTI | GGCGCC | 1 cut(s) | 171 |
| PpsI | GAGTC | 1 cut(s) | 241 |
| PpuMI | RGGWCCY | 1 cut(s) | 225 |
| Psp5II | RGGWCCY | 1 cut(s) | 225 |
| Psp6I | CCWGG | 1 cut(s) | 388 |
| PspFI | CCCAGC | 1 cut(s) | 220 |
| PspGI | CCWGG | 1 cut(s) | 388 |
| PspN4I | GGNNCC | 3 cut(s) | 169, 226, 394 |
| PspPI | GGNCC | 2 cut(s) | 143, 225 |
| PspPPI | RGGWCCY | 1 cut(s) | 225 |
| PsuI | RGATCY | 1 cut(s) | 392 |
| PsyI | GACNNNGTC | 1 cut(s) | 302 |
| PvuII | CAGCTG | 1 cut(s) | 220 |
| RseI | CAYNNNNRTG | 1 cut(s) | 431 |
| SatI | GCNGC | 3 cut(s) | 104, 125, 218 |
| Sau3AI | GATC | 3 cut(s) | 31, 317, 392 |
| Sau96I | GGNCC | 2 cut(s) | 143, 225 |
| SchI | GAGTC | 1 cut(s) | 242 |
| ScrFI | CCNGG | 1 cut(s) | 390 |
| SduI | GDGCHC | 1 cut(s) | 99 |
| SetI | ASST | 5 cut(s) | 8, 207, 222, 248, 440 |
| SfaNI | GCATC | 2 cut(s) | 284, 369 |
| SfoI | GGCGCC | 1 cut(s) | 169 |
| SinI | GGWCC | 2 cut(s) | 143, 225 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 431 |
| Sse9I | AATT | 1 cut(s) | 36 |
| SsiI | CCGC | 1 cut(s) | 302 |
| SspDI | GGCGCC | 1 cut(s) | 167 |
| SspMI | CTAG | 1 cut(s) | 416 |
| StyD4I | CCNGG | 1 cut(s) | 388 |
| StyI | CCWWGG | 2 cut(s) | 396, 415 |
| TaqI | TCGA | 1 cut(s) | 309 |
| TasI | AATT | 1 cut(s) | 36 |
| TfiI | GAWTC | 1 cut(s) | 86 |
| TscAI | CASTG | 1 cut(s) | 363 |
| TseI | GCWGC | 3 cut(s) | 103, 124, 217 |
| TspDTI | ATGAA | 1 cut(s) | 68 |
| TspGWI | ACGGA | 1 cut(s) | 453 |
| TspRI | CASTG | 1 cut(s) | 363 |
| Tth111I | GACNNNGTC | 1 cut(s) | 302 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 362 |
| VpaK11BI | GGWCC | 2 cut(s) | 143, 225 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 414 |
| XceI | RCATGY | 1 cut(s) | 103 |
| XmaJI | CCTAGG | 1 cut(s) | 415 |
| XspI | CTAG | 1 cut(s) | 416 |