Rorug03G0046400

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000093
Physical Location & Seq
Forward (+)
3576982 .. 3578637
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0046400.1

Sequence Viewer

Length: 1656 bp
ATGGAGAGGAACAAAGGGGAGGCAGCCAGGGCAATGCAACTTTCAGAAATGAAGATTCAAGAGAATGATTTTGCTGGAGCAAGGGAAATGGCACGAATAGCTCACCGACTCTTCCCTGAGGATGAGAACATTTCTAAATTACTTGCACTCTCTGAAGTCTACTATTCAATTTTTGAATCTGGTGAAAGCTCCGAGACTGGAGATACTGCTAGAGCTGATTTTGAGCAATTTATCGAAAAGGTCAGTAGTCCTTCTGGAAATCTAAATGATGATGATGATGACAGTGATGATAATGATGATGGTGATGATGATAGTGATGATGATTATGATTATGATGACGATGACGACGATGAAGATGATGATTATGATTATGATTATGATGGCAACAATGAGTATGATGATCATGATGGTGATGATGATGGTGATGACGATTTTGTGATTGCTCCCAAAAGGTTGAGGGAGAGACAATTGAAGAGTTATACTGAGAAGGAGGAGAAGAATGCAGTGGATGGTGGAGTATCTACAAGTGTTGTGAGTCGTCCAAAAAGGTTGAGGCACAGCCAATTCCTCAGTGTTATTAACAGAATGCATGACACGTTTAAGGATCATAATTCTATCAGTTCCATTAAAAGCTCCTCTACCCCTCCATCGTCATCAGCTGCTCAATTCTATGACTTCAATGCACAAAAGTCTGAGGAGAAGATTAGGGTTGGTCAAATATGGGCACTGTATAGTGATGGGAATGGAATGTCTAAGACCTTTGCTCAAGTTAAGAGGATTAATGTCAGGCCAAACAAAAGAGTTCAGAGGACTGTGTCTTCGGGGCATTTTTATTTGCGAATGGGATTGCTTGAACCTTTCTTGGAACCCAAAAACATGGTTGAGCCGGTGTGTTGTGGGACATTTAAAGTCAAACGAGCTCCACCTACACTGTTCTCCCTCACCTCATTATCTCATCGTGTAAAAGCCAGACTTTTGGGCCAGAATATATTTGAAATAATTCCTAGGAGAGGTGAAGTTTGGGCACTATACAAGGAGCACAATCCACTGGTGACCTATCCTAACATGGGGAAGGGTGAATGTCTAGTGGTGGAAGTGCTGGAAGTTCAGCACCAGAGTACAAAGATTGTGGTTCTGGAACAGCTTAATGGATTTAAGTCAGTTTTCAAGGCTCCAACAGTGCAGAGTACCAAAACTGGTGTCATTGATATACCGCAGGCTGAGTTGGGTAGATTCTCTCACCAGATTTCTGCTTTTAAGCATACCAAGGTGAGTCACAGTCGACTTGCAGGGTGTTGGGAGCTTGATCCATTATCAGTTTCTGGTTATGAGAAAGATGGTGTTCCCAAATGTTTCTTTAATTGTGATCCTGCTTCTCTGCTGAACAATCCTGACTACTCTTGTGACCTTGGTGATTTGAAAATGGATAAAAGAAGCATGAATACTGAAACTCATGGTTTGTCTGGTGAGTTACTTGAAGGTGCAGCTAAATCTGTAATAGGTTCTGCGAGCATAGAAACAGGTACGAAACAGGAGACACCTTTTGCTGAAAGAGAGACTTCTGAGAAAGTTGAATCACGAGTTTGTCACTTCTTCTTTGGTAAAGATTTGGTGGATTCCGTTAAGTTAGAAGCAAGTCATGTGTTAATGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

551

Amino Acids

61.92

Weight (kDa)

4.86

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3444 PF11926 220 - 423 2.9e-40 Domain of unknown function (DUF3444)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 159, 1282
AciI CCGC 1 cut(s) 1214
AclWI GGATC 3 cut(s) 612, 1301, 1361
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 3 cut(s) 1120, 1189, 1525
AfiI CCNNNNNNNGG 2 cut(s) 1010, 1067
AflIII ACRYGT 1 cut(s) 594
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 9 cut(s) 101, 189, 215, 633, 659, 920, 1144, 1303, 1487
AluI AGCT 9 cut(s) 101, 189, 215, 633, 659, 920, 1144, 1303, 1487
Alw21I GWGCWC 2 cut(s) 922, 1041
Alw26I GTCTC 4 cut(s) 188, 457, 1529, 1550
AlwI GGATC 3 cut(s) 612, 1301, 1361
AlwNI CAGNNNCTG 1 cut(s) 1322
AoxI GGCC 2 cut(s) 788, 979
ApeKI GCWGC 3 cut(s) 23, 659, 1484
ArsI GACNNNNNNTTYG 4 cut(s) 802, 834, 1185, 1217
AseI ATTAAT 1 cut(s) 780
Asp700I GAANNNNTTC 1 cut(s) 999
AspA2I CCTAGG 1 cut(s) 1004
AspS9I GGNCC 1 cut(s) 979
AvrII CCTAGG 1 cut(s) 1004
AxyI CCTNAGG 1 cut(s) 117
BaeGI GKGCMC 2 cut(s) 727, 1027
BanII GRGCYC 1 cut(s) 922
BarI GAAGNNNNNNTAC 2 cut(s) 1426, 1458
BauI CACGAG 1 cut(s) 1578
BbsI GAAGAC 1 cut(s) 810
Bbv12I GWGCWC 2 cut(s) 922, 1041
BbvI GCAGC 3 cut(s) 35, 646, 1496
BccI CCATC 8 cut(s) 293, 374, 401, 413, 503, 655, 731, 1331
BciT130I CCWGG 1 cut(s) 28
BclI TGATCA 1 cut(s) 400
BcoDI GTCTC 4 cut(s) 188, 457, 1529, 1550
BfaI CTAG 3 cut(s) 210, 1005, 1085
BfmI CTRYAG 1 cut(s) 1652
BisI GCNGC 3 cut(s) 24, 660, 1485
BlnI CCTAGG 1 cut(s) 1004
BlsI GCNGC 3 cut(s) 25, 661, 1486
Bme1390I CCNGG 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 979
BmiI GGNNCC 2 cut(s) 867, 1173
BmrFI CCNGG 1 cut(s) 28
BpiI GAAGAC 1 cut(s) 810
BpmI CTGGAG 2 cut(s) 96, 219
BpuEI CTTGAG 1 cut(s) 750
BsaJI CCNNGG 4 cut(s) 27, 1004, 1266, 1408
Bsc4I CCNNNNNNNGG 2 cut(s) 1010, 1067
Bse118I RCCGGY 1 cut(s) 886
Bse1I ACTGG 3 cut(s) 202, 1053, 1201
Bse21I CCTNAGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 28
BseDI CCNNGG 4 cut(s) 27, 1004, 1266, 1408
BseGI GGATG 2 cut(s) 127, 514
BseLI CCNNNNNNNGG 2 cut(s) 1010, 1067
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 6 cut(s) 108, 474, 583, 684, 1212, 1554
BseNI ACTGG 3 cut(s) 202, 1053, 1201
BseRI GAGGAG 3 cut(s) 506, 625, 710
BseSI GKGCMC 2 cut(s) 727, 1027
BseXI GCAGC 3 cut(s) 35, 646, 1496
BsgI GTGCAG 2 cut(s) 1202, 1503
BshFI GGCC 2 cut(s) 790, 981
BsiHKAI GWGCWC 2 cut(s) 922, 1041
BsiSI CCGG 1 cut(s) 887
BslFI GGGAC 1 cut(s) 913
BslI CCNNNNNNNGG 2 cut(s) 1010, 1067
BsmAI GTCTC 4 cut(s) 188, 457, 1529, 1550
BsmFI GGGAC 1 cut(s) 913
BsmI GAATGC 2 cut(s) 505, 591
BsnI GGCC 2 cut(s) 790, 981
Bsp1286I GDGCHC 4 cut(s) 727, 922, 1027, 1041
Bsp143I GATC 4 cut(s) 400, 604, 1306, 1366
BspACI CCGC 1 cut(s) 1214
BspANI GGCC 2 cut(s) 790, 981
BspCNI CTCAG 6 cut(s) 109, 475, 582, 685, 1213, 1555
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 867, 1173
BspPI GGATC 3 cut(s) 612, 1301, 1361
BsrDI GCAATG 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 886
BsrI ACTGG 3 cut(s) 202, 1053, 1201
BssAI RCCGGY 1 cut(s) 886
BssECI CCNNGG 4 cut(s) 27, 1004, 1266, 1408
BssMI GATC 4 cut(s) 400, 604, 1306, 1366
BssSI CACGAG 1 cut(s) 1578
BssT1I CCWWGG 3 cut(s) 1004, 1266, 1408
Bst2BI CACGAG 1 cut(s) 1578
Bst2UI CCWGG 1 cut(s) 28
Bst4CI ACNGT 6 cut(s) 284, 729, 814, 933, 1180, 1280
Bst6I CTCTTC 2 cut(s) 116, 467
BstC8I GCNNGC 2 cut(s) 1218, 1510
BstDEI CTNAG 7 cut(s) 117, 483, 569, 693, 753, 1221, 1563
BstEII GGTNACC 1 cut(s) 1051
BstENI CCTNNNNNAGG 1 cut(s) 1008
BstF5I GGATG 2 cut(s) 127, 514
BstKTI GATC 4 cut(s) 403, 607, 1309, 1369
BstMAI GTCTC 4 cut(s) 188, 457, 1529, 1550
BstMBI GATC 4 cut(s) 400, 604, 1306, 1366
BstMWI GCNNNNNNNGC 2 cut(s) 29, 98
BstNI CCWGG 1 cut(s) 28
BstPI GGTNACC 1 cut(s) 1051
BstSCI CCNGG 1 cut(s) 26
BstSFI CTRYAG 1 cut(s) 1652
BstSLI GKGCMC 2 cut(s) 727, 1027
BstV1I GCAGC 3 cut(s) 35, 646, 1496
BstV2I GAAGAC 1 cut(s) 810
BstXI CCANNNNNNTGG 2 cut(s) 877, 976
Bsu36I CCTNAGG 1 cut(s) 117
BsuRI GGCC 2 cut(s) 790, 981
BtsCI GGATG 2 cut(s) 127, 514
BtsI GCAGTG 1 cut(s) 510
BtsIMutI CAGTG 7 cut(s) 289, 510, 577, 725, 929, 1046, 1185
Cac8I GCNNGC 2 cut(s) 1218, 1510
CaiI CAGNNNCTG 1 cut(s) 1322
CciI TCATGA 1 cut(s) 403
Cfr10I RCCGGY 1 cut(s) 886
Cfr13I GGNCC 1 cut(s) 979
Csp6I GTAC 3 cut(s) 1119, 1188, 1524
CspCI CAANNNNNGTGG 2 cut(s) 1110, 1145
CviAII CATG 7 cut(s) 404, 590, 877, 1066, 1438, 1454, 1640
CviQI GTAC 3 cut(s) 1119, 1188, 1524
DdeI CTNAG 7 cut(s) 117, 483, 569, 693, 753, 1221, 1563
DpnI GATC 4 cut(s) 402, 606, 1308, 1368
DpnII GATC 4 cut(s) 400, 604, 1306, 1366
DraI TTTAAA 1 cut(s) 907
Eam1104I CTCTTC 2 cut(s) 116, 467
EarI CTCTTC 2 cut(s) 116, 467
Ecl136II GAGCTC 1 cut(s) 920
Eco130I CCWWGG 3 cut(s) 1004, 1266, 1408
Eco24I GRGCYC 1 cut(s) 922
Eco53kI GAGCTC 1 cut(s) 920
Eco57I CTGAAG 1 cut(s) 174
Eco81I CCTNAGG 1 cut(s) 117
Eco91I GGTNACC 1 cut(s) 1051
EcoICRI GAGCTC 1 cut(s) 920
EcoNI CCTNNNNNAGG 1 cut(s) 1008
EcoO65I GGTNACC 1 cut(s) 1051
EcoRII CCWGG 1 cut(s) 26
EcoT14I CCWWGG 3 cut(s) 1004, 1266, 1408
EcoT22I ATGCAT 1 cut(s) 591
EcoT38I GRGCYC 1 cut(s) 922
ErhI CCWWGG 3 cut(s) 1004, 1266, 1408
FaeI CATG 7 cut(s) 407, 593, 880, 1069, 1441, 1457, 1643
FalI AAGNNNNNCTT 4 cut(s) 957, 989, 1543, 1575
FaqI GGGAC 1 cut(s) 913
FatI CATG 7 cut(s) 403, 589, 876, 1065, 1437, 1453, 1639
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 2 cut(s) 159, 1282
Fnu4HI GCNGC 3 cut(s) 24, 660, 1485
FokI GGATG 2 cut(s) 134, 521
FriOI GRGCYC 1 cut(s) 922
Fsp4HI GCNGC 3 cut(s) 24, 660, 1485
FspBI CTAG 3 cut(s) 210, 1005, 1085
GluI GCNGC 3 cut(s) 24, 660, 1485
GsuI CTGGAG 2 cut(s) 96, 219
HaeIII GGCC 2 cut(s) 790, 981
HapII CCGG 1 cut(s) 887
Hin1II CATG 7 cut(s) 407, 593, 880, 1069, 1441, 1457, 1643
HincII GTYRAC 1 cut(s) 1283
HindII GTYRAC 1 cut(s) 1283
HinfI GANTC 8 cut(s) 55, 108, 176, 535, 1233, 1273, 1574, 1616
HpaII CCGG 1 cut(s) 887
Hpy166II GTNNAC 2 cut(s) 160, 1283
Hpy188I TCNGA 6 cut(s) 46, 154, 193, 694, 807, 1564
Hpy188III TCNNGA 6 cut(s) 59, 255, 404, 1136, 1391, 1578
Hpy8I GTNNAC 2 cut(s) 160, 1283
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 4 cut(s) 261, 481, 1066, 1472
HpyCH4III ACNGT 6 cut(s) 284, 729, 814, 933, 1180, 1280
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 8 cut(s) 37, 146, 503, 589, 683, 1183, 1289, 1484
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 98
HpyF3I CTNAG 7 cut(s) 117, 483, 569, 693, 753, 1221, 1563
HpySE526I ACGT 1 cut(s) 596
Hsp92II CATG 7 cut(s) 407, 593, 880, 1069, 1441, 1457, 1643
Ksp22I TGATCA 1 cut(s) 400
Kzo9I GATC 4 cut(s) 400, 604, 1306, 1366
LmnI GCTCC 8 cut(s) 77, 194, 448, 638, 925, 1036, 1177, 1300
Lsp1109I GCAGC 3 cut(s) 35, 646, 1496
MaeI CTAG 3 cut(s) 210, 1005, 1085
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 5 cut(s) 1051, 1274, 1403, 1470, 1586
MalI GATC 4 cut(s) 402, 606, 1308, 1368
MboI GATC 4 cut(s) 400, 604, 1306, 1366
MboII GAAGA 8 cut(s) 64, 103, 365, 484, 508, 712, 810, 1585
MfeI CAATTG 1 cut(s) 467
MhlI GDGCHC 4 cut(s) 727, 922, 1027, 1041
MluCI AATT 9 cut(s) 137, 168, 227, 467, 563, 610, 665, 999, 1360
MlyI GAGTC 3 cut(s) 102, 544, 1282
MmeI TCCRAC 1 cut(s) 1199
Mph1103I ATGCAT 1 cut(s) 591
MroXI GAANNNNTTC 1 cut(s) 999
MslI CAYNNNNRTG 1 cut(s) 408
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 1 cut(s) 887
MspR9I CCNGG 1 cut(s) 28
MunI CAATTG 1 cut(s) 467
Mva1269I GAATGC 2 cut(s) 505, 591
MvaI CCWGG 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 29, 98
NdeII GATC 4 cut(s) 400, 604, 1306, 1366
NlaIII CATG 7 cut(s) 407, 593, 880, 1069, 1441, 1457, 1643
NlaIV GGNNCC 2 cut(s) 867, 1173
NmuCI GTSAC 4 cut(s) 1051, 1274, 1403, 1586
NsiI ATGCAT 1 cut(s) 591
PagI TCATGA 1 cut(s) 403
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PctI GAATGC 2 cut(s) 505, 591
PdmI GAANNNNTTC 1 cut(s) 999
PfeI GAWTC 5 cut(s) 55, 176, 1233, 1574, 1616
PflFI GACNNNGTC 1 cut(s) 814
PkrI GCNGC 3 cut(s) 25, 661, 1486
PleI GAGTC 3 cut(s) 102, 543, 1281
PpsI GAGTC 3 cut(s) 102, 543, 1281
PshBI ATTAAT 1 cut(s) 780
Psp124BI GAGCTC 1 cut(s) 922
Psp6I CCWGG 1 cut(s) 26
PspEI GGTNACC 1 cut(s) 1051
PspGI CCWGG 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 867, 1173
PspPI GGNCC 1 cut(s) 979
PstNI CAGNNNCTG 1 cut(s) 1322
PsyI GACNNNGTC 1 cut(s) 814
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 3 cut(s) 1120, 1189, 1525
RsaNI GTAC 3 cut(s) 1119, 1188, 1524
RseI CAYNNNNRTG 1 cut(s) 408
SacI GAGCTC 1 cut(s) 922
SalI GTCGAC 1 cut(s) 1281
SatI GCNGC 3 cut(s) 24, 660, 1485
Sau3AI GATC 4 cut(s) 400, 604, 1306, 1366
Sau96I GGNCC 1 cut(s) 979
SchI GAGTC 3 cut(s) 102, 544, 1282
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 4 cut(s) 727, 922, 1027, 1041
SfcI CTRYAG 1 cut(s) 1652
SmiMI CAYNNNNRTG 1 cut(s) 408
SmlI CTYRAG 1 cut(s) 765
SmoI CTYRAG 1 cut(s) 765
Sse9I AATT 9 cut(s) 137, 168, 227, 467, 563, 610, 665, 999, 1360
SsiI CCGC 1 cut(s) 1214
SspMI CTAG 3 cut(s) 210, 1005, 1085
SstI GAGCTC 1 cut(s) 922
StyD4I CCNGG 1 cut(s) 26
StyI CCWWGG 3 cut(s) 1004, 1266, 1408
TaaI ACNGT 6 cut(s) 284, 729, 814, 933, 1180, 1280
TaiI ACGT 1 cut(s) 599
TaqI TCGA 2 cut(s) 234, 1282
TasI AATT 9 cut(s) 137, 168, 227, 467, 563, 610, 665, 999, 1360
TatI WGTACW 1 cut(s) 1118
TfiI GAWTC 5 cut(s) 55, 176, 1233, 1574, 1616
TscAI CASTG 7 cut(s) 289, 510, 577, 732, 936, 1053, 1185
TseFI GTSAC 4 cut(s) 1051, 1274, 1403, 1586
TseI GCWGC 3 cut(s) 23, 659, 1484
Tsp45I GTSAC 4 cut(s) 1051, 1274, 1403, 1586
TspDTI ATGAA 3 cut(s) 65, 366, 1454
TspGWI ACGGA 1 cut(s) 1609
TspRI CASTG 7 cut(s) 289, 510, 577, 732, 936, 1053, 1185
Tth111I GACNNNGTC 1 cut(s) 814
VspI ATTAAT 1 cut(s) 780
XagI CCTNNNNNAGG 1 cut(s) 1008
XmaJI CCTAGG 1 cut(s) 1004
XmiI GTMKAC 2 cut(s) 159, 1282
XmnI GAANNNNTTC 1 cut(s) 999
XspI CTAG 3 cut(s) 210, 1005, 1085
Zsp2I ATGCAT 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.