RLG00000018646

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000093
Physical Location & Seq
Forward (+)
33268207 .. 33272531
4325 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018646

Sequence Viewer

Length: 870 bp
ATGGCTTTAATTCAAGGATGTTTCCTGGCAGCAAGATTGAACAAGCTAAATGTCATTTGTGAATGTGATTGCAAGGATTTGGTGGAGTTTGTTAACAACCAAGACTGCGGTGAGAGTTGGAGACTAAATCCTTTTTTGGAAGACCTTCTCAGGTTTAAATCTCTTTTCAGTAACTTCACCTGCACTTGGACTCCCCGTGAAGCTAACCGTTCAGCGGATGCTGCGACCAGGCGAGCTAAGCAGAGGCTATTATCCCAAGAGTGGATGAACTACCCCCCAGCCACTTTGGTGTCAGCTCTTCGACGTGATGTTCAGTCACGTCCCCCAGACGGAGTAGCTGGTCCTGTAGCTGCTGCTACTTGTGTTTTTTTGCTTTCAGTATTTCTGTTCCTTGTCTTTTTCTTGGCTCTGGTTATTTTGGTCTGCTTTCTCTTCTTGATTGTGTTGGGGAACACGGAGGCGGTATTGAGTTCGGGGGTTGCAGGCGCTGTTGTTTATGCGTCCAAGCTCAATGGTGAAGTGAAAGATGCGACCTCTGGGGAGGGGATGGCATCTAGATGGCAATTGAGCAGTGATCCGGTCTTGGTTTGGTCAAGATCAGATCGGAAAGGTCAATTCCAATCTAGTCCATGGGATGAAGGTGTCTCTGTTACCGGTGTTGATATTTGGCGCGCCGGCCATCTTGCTATCCCGGATGGTGACGGCGTGCTGGTTTGCTCGGACCTAGGGATTATTGCATCTAAGGGTGGTGCTATGGGTATAACGGCTGCAAGTATGGTGGCAAAAGCGGCGGTCGACACAAACTGGGGTTTCCGGAGATGCGGGCGGATCTGCTTTCCTCCTGCCCGGGTATTTCGATGGCGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

290

Amino Acids

31.51

Weight (kDa)

8.51

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 1 - 78 5.2e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 188
AccI GTMKAC 1 cut(s) 795
AccII CGCG 1 cut(s) 672
AccIII TCCGGA 1 cut(s) 813
AciI CCGC 8 cut(s) 108, 215, 461, 788, 791, 822, 826, 862
AclWI GGATC 2 cut(s) 569, 836
AcoI YGGCCR 1 cut(s) 676
AfiI CCNNNNNNNGG 4 cut(s) 186, 214, 261, 329
AgeI ACCGGT 1 cut(s) 653
AgsI TTSAA 2 cut(s) 14, 40
AjiI CACGTC 2 cut(s) 305, 320
AjnI CCWGG 2 cut(s) 24, 227
AleI CACNNNNGTG 1 cut(s) 287
AluBI AGCT 7 cut(s) 46, 203, 236, 296, 338, 350, 508
AluI AGCT 7 cut(s) 46, 203, 236, 296, 338, 350, 508
Alw26I GTCTC 2 cut(s) 115, 649
AlwI GGATC 2 cut(s) 569, 836
AlwNI CAGNNNCTG 1 cut(s) 488
Ama87I CYCGRG 1 cut(s) 846
Aor13HI TCCGGA 1 cut(s) 813
AoxI GGCC 1 cut(s) 676
ApeKI GCWGC 5 cut(s) 29, 221, 350, 353, 767
AscI GGCGCGCC 1 cut(s) 670
AsiGI ACCGGT 1 cut(s) 653
Asp700I GAANNNNTTC 1 cut(s) 144
AspA2I CCTAGG 1 cut(s) 724
AspLEI GCGC 3 cut(s) 488, 672, 674
AspS9I GGNCC 2 cut(s) 341, 721
AsuC2I CCSGG 3 cut(s) 692, 847, 848
AsuHPI GGTGA 4 cut(s) 122, 169, 527, 710
AvaI CYCGRG 1 cut(s) 846
AvaII GGWCC 2 cut(s) 341, 721
AvrII CCTAGG 1 cut(s) 724
BbsI GAAGAC 1 cut(s) 147
BbvI GCAGC 5 cut(s) 41, 208, 337, 340, 754
BccI CCATC 5 cut(s) 541, 552, 687, 689, 852
BceAI ACGGC 2 cut(s) 718, 780
BciT130I CCWGG 2 cut(s) 26, 229
BcnI CCSGG 3 cut(s) 692, 847, 848
BcoDI GTCTC 2 cut(s) 115, 649
BfaI CTAG 3 cut(s) 555, 624, 725
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 489
BfuAI ACCTGC 1 cut(s) 188
BisI GCNGC 6 cut(s) 30, 222, 351, 354, 768, 789
BlnI CCTAGG 1 cut(s) 724
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 6 cut(s) 31, 223, 352, 355, 769, 790
Bme1390I CCNGG 5 cut(s) 26, 229, 692, 847, 848
Bme18I GGWCC 2 cut(s) 341, 721
BmeT110I CYCGRG 1 cut(s) 846
BmgBI CACGTC 2 cut(s) 305, 320
BmgT120I GGNCC 2 cut(s) 341, 721
BmrFI CCNGG 5 cut(s) 26, 229, 692, 847, 848
BmrI ACTGGG 1 cut(s) 814
BmsI GCATC 5 cut(s) 208, 517, 560, 746, 809
BmuI ACTGGG 1 cut(s) 814
BpiI GAAGAC 1 cut(s) 147
Bpu1102I GCTNAGC 1 cut(s) 237
BpuMI CCSGG 3 cut(s) 692, 847, 848
BsaJI CCNNGG 3 cut(s) 629, 724, 846
BsaWI WCCGGW 3 cut(s) 577, 653, 813
BsaXI ACNNNNNCTCC 2 cut(s) 175, 205
Bsc4I CCNNNNNNNGG 4 cut(s) 186, 214, 261, 329
Bse118I RCCGGY 2 cut(s) 653, 674
Bse1I ACTGG 1 cut(s) 809
BseAI TCCGGA 1 cut(s) 813
BseBI CCWGG 2 cut(s) 26, 229
BseDI CCNNGG 3 cut(s) 629, 724, 846
BseGI GGATG 6 cut(s) 23, 223, 270, 552, 640, 700
BseLI CCNNNNNNNGG 4 cut(s) 186, 214, 261, 329
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 1 cut(s) 809
BsePI GCGCGC 1 cut(s) 670
BseXI GCAGC 5 cut(s) 41, 208, 337, 340, 754
BseYI CCCAGC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 672
Bsh1285I CGRYCG 1 cut(s) 795
BshFI GGCC 1 cut(s) 678
BshTI ACCGGT 1 cut(s) 653
BsiEI CGRYCG 1 cut(s) 795
BsiHKCI CYCGRG 1 cut(s) 846
BsiSI CCGG 6 cut(s) 578, 654, 675, 692, 814, 847
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 4 cut(s) 186, 214, 261, 329
BsmAI GTCTC 2 cut(s) 115, 649
BsmFI GGGAC 1 cut(s) 306
BsnI GGCC 1 cut(s) 678
BsoBI CYCGRG 1 cut(s) 846
Bsp13I TCCGGA 1 cut(s) 813
Bsp143I GATC 4 cut(s) 574, 596, 601, 828
Bsp1720I GCTNAGC 1 cut(s) 237
Bsp19I CCATGG 1 cut(s) 629
BspACI CCGC 8 cut(s) 108, 215, 461, 788, 791, 822, 826, 862
BspANI GGCC 1 cut(s) 678
BspCNI CTCAG 1 cut(s) 162
BspEI TCCGGA 1 cut(s) 813
BspFNI CGCG 1 cut(s) 672
BspMI ACCTGC 1 cut(s) 188
BspPI GGATC 2 cut(s) 569, 836
BspQI GCTCTTC 1 cut(s) 303
BsrFI RCCGGY 2 cut(s) 653, 674
BsrI ACTGG 1 cut(s) 809
BssAI RCCGGY 2 cut(s) 653, 674
BssECI CCNNGG 3 cut(s) 629, 724, 846
BssHII GCGCGC 1 cut(s) 670
BssMI GATC 4 cut(s) 574, 596, 601, 828
BssT1I CCWWGG 2 cut(s) 629, 724
Bst2UI CCWGG 2 cut(s) 26, 229
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 2 cut(s) 303, 437
BstC8I GCNNGC 6 cut(s) 234, 484, 672, 676, 707, 824
BstDEI CTNAG 3 cut(s) 149, 237, 741
BstDSI CCRYGG 1 cut(s) 629
BstF5I GGATG 6 cut(s) 23, 223, 270, 552, 640, 700
BstFNI CGCG 1 cut(s) 672
BstH2I RGCGCY 1 cut(s) 489
BstHHI GCGC 3 cut(s) 488, 672, 674
BstKTI GATC 4 cut(s) 577, 599, 604, 831
BstMAI GTCTC 2 cut(s) 115, 649
BstMBI GATC 4 cut(s) 574, 596, 601, 828
BstMCI CGRYCG 1 cut(s) 795
BstMWI GCNNNNNNNGC 3 cut(s) 221, 238, 788
BstNI CCWGG 2 cut(s) 26, 229
BstSCI CCNGG 5 cut(s) 24, 227, 690, 845, 846
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 1 cut(s) 672
BstV1I GCAGC 5 cut(s) 41, 208, 337, 340, 754
BstV2I GAAGAC 1 cut(s) 147
BstX2I RGATCY 1 cut(s) 828
BstYI RGATCY 1 cut(s) 828
BsuRI GGCC 1 cut(s) 678
BtgI CCRYGG 1 cut(s) 629
BtrI CACGTC 2 cut(s) 305, 320
BtsCI GGATG 6 cut(s) 23, 223, 270, 552, 640, 700
BtsI GCAGTG 1 cut(s) 577
BtsIMutI CAGTG 1 cut(s) 577
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 6 cut(s) 234, 484, 672, 676, 707, 824
CaiI CAGNNNCTG 1 cut(s) 488
CfoI GCGC 3 cut(s) 488, 672, 674
Cfr10I RCCGGY 2 cut(s) 653, 674
Cfr13I GGNCC 2 cut(s) 341, 721
Cfr9I CCCGGG 1 cut(s) 846
CseI GACGC 1 cut(s) 489
CspAI ACCGGT 1 cut(s) 653
CspCI CAANNNNNGTGG 2 cut(s) 759, 794
CviAII CATG 1 cut(s) 630
DdeI CTNAG 3 cut(s) 149, 237, 741
DpnI GATC 4 cut(s) 576, 598, 603, 830
DpnII GATC 4 cut(s) 574, 596, 601, 828
DraI TTTAAA 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 676
Eam1104I CTCTTC 2 cut(s) 303, 437
EarI CTCTTC 2 cut(s) 303, 437
EciI GGCGGA 1 cut(s) 841
Eco130I CCWWGG 2 cut(s) 629, 724
Eco47I GGWCC 2 cut(s) 341, 721
Eco88I CYCGRG 1 cut(s) 846
EcoRII CCWGG 2 cut(s) 24, 227
EcoT14I CCWWGG 2 cut(s) 629, 724
ErhI CCWWGG 2 cut(s) 629, 724
FaeI CATG 1 cut(s) 633
FaiI YATR 5 cut(s) 498, 631, 755, 761, 776
FaqI GGGAC 1 cut(s) 306
FatI CATG 1 cut(s) 629
FauI CCCGC 2 cut(s) 815, 855
FblI GTMKAC 1 cut(s) 795
Fnu4HI GCNGC 6 cut(s) 30, 222, 351, 354, 768, 789
FokI GGATG 6 cut(s) 30, 230, 277, 559, 647, 707
Fsp4HI GCNGC 6 cut(s) 30, 222, 351, 354, 768, 789
FspBI CTAG 3 cut(s) 555, 624, 725
GlaI GCGC 3 cut(s) 487, 671, 673
GluI GCNGC 6 cut(s) 30, 222, 351, 354, 768, 789
GsaI CCCAGC 1 cut(s) 281
HaeII RGCGCY 1 cut(s) 489
HaeIII GGCC 1 cut(s) 678
HapII CCGG 6 cut(s) 578, 654, 675, 692, 814, 847
HgaI GACGC 1 cut(s) 489
HhaI GCGC 3 cut(s) 488, 672, 674
Hin1II CATG 1 cut(s) 633
Hin6I GCGC 3 cut(s) 486, 670, 672
HinP1I GCGC 3 cut(s) 486, 670, 672
HincII GTYRAC 2 cut(s) 94, 796
HindII GTYRAC 2 cut(s) 94, 796
HinfI GANTC 1 cut(s) 190
HpaI GTTAAC 1 cut(s) 94
HpaII CCGG 6 cut(s) 578, 654, 675, 692, 814, 847
HphI GGTGA 4 cut(s) 122, 169, 527, 710
Hpy166II GTNNAC 2 cut(s) 94, 796
Hpy188I TCNGA 3 cut(s) 601, 606, 721
Hpy188III TCNNGA 4 cut(s) 436, 555, 594, 814
Hpy8I GTNNAC 2 cut(s) 94, 796
Hpy99I CGWCG 1 cut(s) 306
HpyAV CCTTC 2 cut(s) 155, 632
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 2 cut(s) 304, 319
HpyCH4V TGCA 5 cut(s) 72, 183, 482, 737, 770
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 238, 788
HpyF3I CTNAG 3 cut(s) 149, 237, 741
HpySE526I ACGT 2 cut(s) 304, 319
Hsp92II CATG 1 cut(s) 633
HspAI GCGC 3 cut(s) 486, 670, 672
Kpn2I TCCGGA 1 cut(s) 813
KroI GCCGGC 1 cut(s) 674
KroNI GCCGGC 1 cut(s) 676
KspAI GTTAAC 1 cut(s) 94
Kzo9I GATC 4 cut(s) 574, 596, 601, 828
LguI GCTCTTC 1 cut(s) 303
Lsp1109I GCAGC 5 cut(s) 41, 208, 337, 340, 754
LweI GCATC 5 cut(s) 208, 517, 560, 746, 809
MaeI CTAG 3 cut(s) 555, 624, 725
MaeII ACGT 2 cut(s) 304, 319
MaeIII GTNAC 4 cut(s) 170, 315, 649, 698
MalI GATC 4 cut(s) 576, 598, 603, 830
MboI GATC 4 cut(s) 574, 596, 601, 828
MboII GAAGA 3 cut(s) 152, 290, 424
MfeI CAATTG 1 cut(s) 563
MflI RGATCY 1 cut(s) 828
MluCI AATT 3 cut(s) 9, 563, 614
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 5 cut(s) 237, 451, 535, 544, 849
MroI TCCGGA 1 cut(s) 813
MroNI GCCGGC 1 cut(s) 674
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 3 cut(s) 8, 93, 156
MslI CAYNNNNRTG 2 cut(s) 287, 556
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 6 cut(s) 578, 654, 675, 692, 814, 847
MspR9I CCNGG 5 cut(s) 26, 229, 692, 847, 848
MunI CAATTG 1 cut(s) 563
MvaI CCWGG 2 cut(s) 26, 229
MvnI CGCG 1 cut(s) 672
MwoI GCNNNNNNNGC 3 cut(s) 221, 238, 788
NaeI GCCGGC 1 cut(s) 676
NciI CCSGG 3 cut(s) 692, 847, 848
NcoI CCATGG 1 cut(s) 629
NdeII GATC 4 cut(s) 574, 596, 601, 828
NgoMIV GCCGGC 1 cut(s) 674
NlaIII CATG 1 cut(s) 633
NmuCI GTSAC 2 cut(s) 315, 698
OliI CACNNNNGTG 1 cut(s) 287
PalAI GGCGCGCC 1 cut(s) 670
PaqCI CACCTGC 1 cut(s) 188
PauI GCGCGC 1 cut(s) 670
PciSI GCTCTTC 1 cut(s) 303
PdiI GCCGGC 1 cut(s) 676
PdmI GAANNNNTTC 1 cut(s) 144
PfoI TCCNGGA 1 cut(s) 690
PinAI ACCGGT 1 cut(s) 653
PkrI GCNGC 6 cut(s) 31, 223, 352, 355, 769, 790
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 24, 227
PspFI CCCAGC 1 cut(s) 277
PspGI CCWGG 2 cut(s) 24, 227
PspPI GGNCC 2 cut(s) 341, 721
PstNI CAGNNNCTG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 828
PteI GCGCGC 1 cut(s) 670
RseI CAYNNNNRTG 2 cut(s) 287, 556
SalI GTCGAC 1 cut(s) 794
SapI GCTCTTC 1 cut(s) 303
SaqAI TTAA 3 cut(s) 8, 93, 156
SatI GCNGC 6 cut(s) 30, 222, 351, 354, 768, 789
Sau3AI GATC 4 cut(s) 574, 596, 601, 828
Sau96I GGNCC 2 cut(s) 341, 721
SchI GAGTC 1 cut(s) 184
ScrFI CCNGG 5 cut(s) 26, 229, 692, 847, 848
SfaNI GCATC 5 cut(s) 208, 517, 560, 746, 809
SfcI CTRYAG 1 cut(s) 345
SgsI GGCGCGCC 1 cut(s) 670
SinI GGWCC 2 cut(s) 341, 721
SmaI CCCGGG 1 cut(s) 848
SmiMI CAYNNNNRTG 2 cut(s) 287, 556
Sse9I AATT 3 cut(s) 9, 563, 614
SsiI CCGC 8 cut(s) 108, 215, 461, 788, 791, 822, 826, 862
SspMI CTAG 3 cut(s) 555, 624, 725
StyD4I CCNGG 5 cut(s) 24, 227, 690, 845, 846
StyI CCWWGG 2 cut(s) 629, 724
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 2 cut(s) 307, 322
TaqI TCGA 3 cut(s) 301, 795, 856
TasI AATT 3 cut(s) 9, 563, 614
TauI GCSGC 1 cut(s) 791
Tru1I TTAA 3 cut(s) 8, 93, 156
Tru9I TTAA 3 cut(s) 8, 93, 156
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 2 cut(s) 315, 698
TseI GCWGC 5 cut(s) 29, 221, 350, 353, 767
Tsp45I GTSAC 2 cut(s) 315, 698
TspDTI ATGAA 2 cut(s) 281, 651
TspGWI ACGGA 2 cut(s) 345, 470
TspMI CCCGGG 1 cut(s) 846
TspRI CASTG 1 cut(s) 577
VpaK11BI GGWCC 2 cut(s) 341, 721
XbaI TCTAGA 1 cut(s) 554
XmaI CCCGGG 1 cut(s) 846
XmaJI CCTAGG 1 cut(s) 724
XmiI GTMKAC 1 cut(s) 795
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 3 cut(s) 555, 624, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.