FvH4_6g30670

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000093
Physical Location & Seq
Forward (+)
23749109 .. 23756158
7050 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30670.t1

Sequence Viewer

Length: 1125 bp
ATGGAGGAGATAGTATCCGTATCATTTCCTAGCTTGGAGACGTTAAGGCTCAGTAAGCTACCTAAGTTGAAGGCAGTATGGCAAAACCAACTTGCTCCAGACTCTTTTTGCCGGCTTAGAAATGTCACTGTGATGAAATGCGTCAGCCTAATTAATCTATTTGTGCCTTGTATTTCCAAAAGATTGGATTCTTTAGAGGCCTTGTATGTGGCGTGCTGCCGGTTACTAGAAGTGTTGAAGAGCATCTATCCCGGGAAGCATGTTTCACAGTGGCCTTCACTCCAAGATTTGGAAGTGAATGAATGTGGTGAAGTAGAGATTGTAGCTGGGGAGCTTTCACTTTGTCGAGAAAACCAAGAGTCTGACTCTCACTCTATTCAGATTAAGTCATTAAACAACCTCTCATTTTATTTGAAAGTGTTCACCAGTGTTTCCCCACTTGGAAGCTTTGGAATTGGGGGCCATAGAGATGTGGAGTGGTCCATTACTACCCCCAGTGTTTGTTGTAGCATAGTGATTCAATCCAGCCTCAATCTGGCCTTGGAATTTTGGAATGCAAACCGGAAAGACCCACCACCACCTCTGGTGTCCGAAGCGAGTACTCGAAAACGATGGCAGCCCCCGCCATTGGATGTTGTGGATGTATGTTGTGATGCCTCATGGATCGAATCGGGGTCTTGTGGTATGGGAGTTGTTATCAGGTCCAATTCCGGAGAGCTTGTGGATTGTGTATCCAATGTGAATAAGTGTGGATCACCTGCATTGGCAGAAGCAAATGCATTGCTTCTTGGAGTGGAATCGGCCTTGAATCTGGGATTGGCGAAGGTATGTCTCAGATCAGATTCTCTAGAAGTCATTAACAACATCAAAGCTTCATCTAACTATATGGATTGGAGGTTATTCCCAATCATTGAAGAAATTAGAAGGAGAAGTCAGAGGTTTTGTTCTATTACCTGGGAATGGATTCCTCGTGAAGTGAATCAAGCTGCTCATGTAGTGGCTTCGCTTGCCAAGTCGAGGTTGGGTCTTCACCGATGGGCTTCAATGCCACCACCCTCTTTAGCTTCTGTTCTTCGAAATGACGGCATGCCTTGTCATCCGACGCCGGTCATGGGAGTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

375

Amino Acids

41.3

Weight (kDa)

6.6

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 5 - 73 2e-12 Plant disease resistance protein RPS2-like, leucine-rich repeats
RVT_3 PF13456 221 - 336 2.1e-24 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 766
Acc36I ACCTGC 1 cut(s) 766
AccB7I CCANNNNNTGG 1 cut(s) 289
AccIII TCCGGA 1 cut(s) 710
AciI CCGC 1 cut(s) 623
AclWI GGATC 2 cut(s) 671, 760
AcsI RAATTY 1 cut(s) 545
AcyI GRCGYC 1 cut(s) 1103
AfaI GTAC 1 cut(s) 601
AfiI CCNNNNNNNGG 6 cut(s) 289, 535, 628, 960, 1017, 1112
AgsI TTSAA 7 cut(s) 70, 238, 415, 521, 808, 914, 1044
AjnI CCWGG 1 cut(s) 953
AjuI GAANNNNNNNTTGG 2 cut(s) 800, 832
AluBI AGCT 9 cut(s) 33, 58, 326, 334, 447, 718, 872, 986, 1064
AluI AGCT 9 cut(s) 33, 58, 326, 334, 447, 718, 872, 986, 1064
Alw26I GTCTC 2 cut(s) 32, 836
AlwI GGATC 2 cut(s) 671, 760
Ama87I CYCGRG 1 cut(s) 251
Aor13HI TCCGGA 1 cut(s) 710
AoxI GGCC 5 cut(s) 198, 272, 460, 537, 801
ApeKI GCWGC 3 cut(s) 216, 616, 986
ApoI RAATTY 1 cut(s) 545
AseI ATTAAT 1 cut(s) 153
Asp700I GAANNNNTTC 2 cut(s) 419, 963
AspS9I GGNCC 3 cut(s) 460, 480, 702
AsuC2I CCSGG 2 cut(s) 252, 253
AsuHPI GGTGA 4 cut(s) 320, 415, 747, 1022
AsuII TTCGAA 1 cut(s) 1075
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 2 cut(s) 480, 702
BauI CACGAG 1 cut(s) 969
BbsI GAAGAC 1 cut(s) 1019
BbvI GCAGC 3 cut(s) 203, 628, 973
BccI CCATC 2 cut(s) 606, 1029
BceAI ACGGC 1 cut(s) 1099
BciT130I CCWGG 1 cut(s) 955
BciVI GTATCC 2 cut(s) 25, 742
BcnI CCSGG 2 cut(s) 252, 253
BcoDI GTCTC 2 cut(s) 32, 836
BfaI CTAG 3 cut(s) 30, 227, 848
BfuAI ACCTGC 1 cut(s) 766
BfuI GTATCC 2 cut(s) 25, 742
BisI GCNGC 3 cut(s) 217, 617, 987
BlsI GCNGC 3 cut(s) 218, 618, 988
BmcAI AGTACT 1 cut(s) 601
Bme1390I CCNGG 3 cut(s) 252, 253, 955
Bme18I GGWCC 2 cut(s) 480, 702
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 3 cut(s) 460, 480, 702
BmiI GGNNCC 1 cut(s) 461
BmrFI CCNGG 3 cut(s) 252, 253, 955
BmrI ACTGGG 1 cut(s) 489
BmsI GCATC 2 cut(s) 252, 643
BmuI ACTGGG 1 cut(s) 489
BoxI GACNNNNGTC 1 cut(s) 1106
BpiI GAAGAC 1 cut(s) 1019
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BpmI CTGGAG 1 cut(s) 81
Bpu14I TTCGAA 1 cut(s) 1075
BpuMI CCSGG 2 cut(s) 252, 253
BsaHI GRCGYC 1 cut(s) 1103
BsaJI CCNNGG 3 cut(s) 251, 540, 954
BsaWI WCCGGW 2 cut(s) 561, 710
BsaXI ACNNNNNCTCC 2 cut(s) 705, 735
Bsc4I CCNNNNNNNGG 6 cut(s) 289, 535, 628, 960, 1017, 1112
Bse118I RCCGGY 3 cut(s) 111, 219, 1105
Bse1I ACTGG 2 cut(s) 426, 495
Bse3DI GCAATG 1 cut(s) 779
BseAI TCCGGA 1 cut(s) 710
BseBI CCWGG 1 cut(s) 955
BseDI CCNNGG 3 cut(s) 251, 540, 954
BseGI GGATG 3 cut(s) 637, 646, 1096
BseLI CCNNNNNNNGG 6 cut(s) 289, 535, 628, 960, 1017, 1112
BseMI GCAATG 1 cut(s) 779
BseMII CTCAG 2 cut(s) 64, 847
BseNI ACTGG 2 cut(s) 426, 495
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 3 cut(s) 203, 628, 973
BseYI CCCAGC 1 cut(s) 326
BshFI GGCC 5 cut(s) 200, 274, 462, 539, 803
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 6 cut(s) 112, 220, 252, 562, 711, 1106
BslI CCNNNNNNNGG 6 cut(s) 289, 535, 628, 960, 1017, 1112
BsmAI GTCTC 2 cut(s) 32, 836
BsmBI CGTCTC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 559
BsnI GGCC 5 cut(s) 200, 274, 462, 539, 803
BsoBI CYCGRG 1 cut(s) 251
Bsp119I TTCGAA 1 cut(s) 1075
Bsp13I TCCGGA 1 cut(s) 710
Bsp143I GATC 3 cut(s) 663, 752, 836
BspACI CCGC 1 cut(s) 623
BspANI GGCC 5 cut(s) 200, 274, 462, 539, 803
BspCNI CTCAG 2 cut(s) 63, 846
BspEI TCCGGA 1 cut(s) 710
BspLI GGNNCC 1 cut(s) 461
BspMI ACCTGC 1 cut(s) 766
BspPI GGATC 2 cut(s) 671, 760
BspQI GCTCTTC 1 cut(s) 233
BspT104I TTCGAA 1 cut(s) 1075
BsrDI GCAATG 1 cut(s) 779
BsrFI RCCGGY 3 cut(s) 111, 219, 1105
BsrI ACTGG 2 cut(s) 426, 495
BssAI RCCGGY 3 cut(s) 111, 219, 1105
BssECI CCNNGG 3 cut(s) 251, 540, 954
BssMI GATC 3 cut(s) 663, 752, 836
BssNI GRCGYC 1 cut(s) 1103
BssSI CACGAG 1 cut(s) 969
BssT1I CCWWGG 1 cut(s) 540
Bst2BI CACGAG 1 cut(s) 969
Bst2UI CCWGG 1 cut(s) 955
Bst4CI ACNGT 2 cut(s) 130, 270
Bst6I CTCTTC 1 cut(s) 233
BstACI GRCGYC 1 cut(s) 1103
BstBI TTCGAA 1 cut(s) 1075
BstC8I GCNNGC 4 cut(s) 113, 214, 1008, 1088
BstDEI CTNAG 4 cut(s) 50, 63, 116, 833
BstF5I GGATG 3 cut(s) 637, 646, 1096
BstKTI GATC 3 cut(s) 666, 755, 839
BstMAI GTCTC 2 cut(s) 32, 836
BstMBI GATC 3 cut(s) 663, 752, 836
BstMWI GCNNNNNNNGC 3 cut(s) 55, 622, 1007
BstNI CCWGG 1 cut(s) 955
BstNSI RCATGY 2 cut(s) 263, 1090
BstPAI GACNNNNGTC 1 cut(s) 1106
BstSCI CCNGG 3 cut(s) 250, 251, 953
BstV1I GCAGC 3 cut(s) 203, 628, 973
BstV2I GAAGAC 1 cut(s) 1019
BstXI CCANNNNNNTGG 1 cut(s) 184
BsuI GTATCC 2 cut(s) 25, 742
BsuRI GGCC 5 cut(s) 200, 274, 462, 539, 803
BtsCI GGATG 3 cut(s) 637, 646, 1096
BtsIMutI CAGTG 4 cut(s) 126, 275, 433, 502
BveI ACCTGC 1 cut(s) 766
Cac8I GCNNGC 4 cut(s) 113, 214, 1008, 1088
Cfr10I RCCGGY 3 cut(s) 111, 219, 1105
Cfr13I GGNCC 3 cut(s) 460, 480, 702
Cfr9I CCCGGG 1 cut(s) 251
CseI GACGC 2 cut(s) 130, 1111
Csp6I GTAC 1 cut(s) 600
CviAII CATG 5 cut(s) 260, 660, 992, 1087, 1111
CviQI GTAC 1 cut(s) 600
DdeI CTNAG 4 cut(s) 50, 63, 116, 833
DpnI GATC 3 cut(s) 665, 754, 838
DpnII GATC 3 cut(s) 663, 752, 836
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 540
Eco147I AGGCCT 1 cut(s) 200
Eco47I GGWCC 2 cut(s) 480, 702
Eco88I CYCGRG 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 953
EcoT14I CCWWGG 1 cut(s) 540
EcoT22I ATGCAT 1 cut(s) 781
ErhI CCWWGG 1 cut(s) 540
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 5 cut(s) 263, 663, 995, 1090, 1114
FatI CATG 5 cut(s) 259, 659, 991, 1086, 1110
FauI CCCGC 1 cut(s) 630
Fnu4HI GCNGC 3 cut(s) 217, 617, 987
FokI GGATG 3 cut(s) 644, 653, 1083
Fsp4HI GCNGC 3 cut(s) 217, 617, 987
FspBI CTAG 3 cut(s) 30, 227, 848
GluI GCNGC 3 cut(s) 217, 617, 987
GsaI CCCAGC 1 cut(s) 330
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 5 cut(s) 200, 274, 462, 539, 803
HapII CCGG 6 cut(s) 112, 220, 252, 562, 711, 1106
HgaI GACGC 2 cut(s) 130, 1111
Hin1I GRCGYC 1 cut(s) 1103
Hin1II CATG 5 cut(s) 263, 663, 995, 1090, 1114
HindIII AAGCTT 2 cut(s) 445, 870
HpaII CCGG 6 cut(s) 112, 220, 252, 562, 711, 1106
HphI GGTGA 4 cut(s) 320, 415, 747, 1022
Hpy166II GTNNAC 1 cut(s) 423
Hpy188I TCNGA 7 cut(s) 364, 381, 592, 836, 841, 936, 1101
Hpy188III TCNNGA 5 cut(s) 98, 347, 711, 848, 971
Hpy8I GTNNAC 1 cut(s) 423
Hpy99I CGWCG 1 cut(s) 1105
HpyAV CCTTC 4 cut(s) 64, 285, 817, 918
HpyCH4III ACNGT 2 cut(s) 130, 270
HpyCH4IV ACGT 1 cut(s) 41
HpyCH4V TGCA 3 cut(s) 557, 761, 779
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 622, 1007
HpyF3I CTNAG 4 cut(s) 50, 63, 116, 833
HpySE526I ACGT 1 cut(s) 41
Hsp92I GRCGYC 1 cut(s) 1103
Hsp92II CATG 5 cut(s) 263, 663, 995, 1090, 1114
Kpn2I TCCGGA 1 cut(s) 710
KroI GCCGGC 1 cut(s) 111
KroNI GCCGGC 1 cut(s) 113
Kzo9I GATC 3 cut(s) 663, 752, 836
LguI GCTCTTC 1 cut(s) 233
LmnI GCTCC 2 cut(s) 100, 331
Lsp1109I GCAGC 3 cut(s) 203, 628, 973
LweI GCATC 2 cut(s) 252, 643
MaeI CTAG 3 cut(s) 30, 227, 848
MaeII ACGT 1 cut(s) 41
MaeIII GTNAC 2 cut(s) 124, 222
MalI GATC 3 cut(s) 665, 754, 838
MboI GATC 3 cut(s) 663, 752, 836
MboII GAAGA 4 cut(s) 250, 926, 1019, 1064
MluCI AATT 5 cut(s) 150, 453, 545, 706, 918
MlyI GAGTC 3 cut(s) 95, 359, 368
MmeI TCCRAC 1 cut(s) 1124
Mph1103I ATGCAT 1 cut(s) 781
MroI TCCGGA 1 cut(s) 710
MroNI GCCGGC 1 cut(s) 111
MroXI GAANNNNTTC 2 cut(s) 419, 963
MseI TTAA 5 cut(s) 44, 153, 384, 392, 858
MslI CAYNNNNRTG 3 cut(s) 131, 468, 1115
MspI CCGG 6 cut(s) 112, 220, 252, 562, 711, 1106
MspR9I CCNGG 3 cut(s) 252, 253, 955
Mva1269I GAATGC 1 cut(s) 559
MvaI CCWGG 1 cut(s) 955
MwoI GCNNNNNNNGC 3 cut(s) 55, 622, 1007
NaeI GCCGGC 1 cut(s) 113
NciI CCSGG 2 cut(s) 252, 253
NdeII GATC 3 cut(s) 663, 752, 836
NgoMIV GCCGGC 1 cut(s) 111
NlaIII CATG 5 cut(s) 263, 663, 995, 1090, 1114
NlaIV GGNNCC 1 cut(s) 461
NmuCI GTSAC 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 781
NspI RCATGY 2 cut(s) 263, 1090
NspV TTCGAA 1 cut(s) 1075
PaeI GCATGC 1 cut(s) 1090
PaqCI CACCTGC 1 cut(s) 766
PceI AGGCCT 1 cut(s) 200
PciSI GCTCTTC 1 cut(s) 233
PctI GAATGC 1 cut(s) 559
PdiI GCCGGC 1 cut(s) 113
PdmI GAANNNNTTC 2 cut(s) 419, 963
PfeI GAWTC 8 cut(s) 188, 517, 668, 797, 808, 842, 964, 979
PflMI CCANNNNNTGG 1 cut(s) 289
PkrI GCNGC 3 cut(s) 218, 618, 988
PleI GAGTC 3 cut(s) 95, 359, 367
PpsI GAGTC 3 cut(s) 95, 359, 367
PshAI GACNNNNGTC 1 cut(s) 1106
PshBI ATTAAT 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 953
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 1 cut(s) 953
PspN4I GGNNCC 1 cut(s) 461
PspPI GGNCC 3 cut(s) 460, 480, 702
RsaI GTAC 1 cut(s) 601
RsaNI GTAC 1 cut(s) 600
RseI CAYNNNNRTG 3 cut(s) 131, 468, 1115
SapI GCTCTTC 1 cut(s) 233
SaqAI TTAA 5 cut(s) 44, 153, 384, 392, 858
SatI GCNGC 3 cut(s) 217, 617, 987
Sau3AI GATC 3 cut(s) 663, 752, 836
Sau96I GGNCC 3 cut(s) 460, 480, 702
ScaI AGTACT 1 cut(s) 601
SchI GAGTC 3 cut(s) 95, 359, 368
ScrFI CCNGG 3 cut(s) 252, 253, 955
SfaNI GCATC 2 cut(s) 252, 643
SfuI TTCGAA 1 cut(s) 1075
SinI GGWCC 2 cut(s) 480, 702
SmaI CCCGGG 1 cut(s) 253
SmiMI CAYNNNNRTG 3 cut(s) 131, 468, 1115
SphI GCATGC 1 cut(s) 1090
Sse9I AATT 5 cut(s) 150, 453, 545, 706, 918
SseBI AGGCCT 1 cut(s) 200
SsiI CCGC 1 cut(s) 623
SspMI CTAG 3 cut(s) 30, 227, 848
StuI AGGCCT 1 cut(s) 200
StyD4I CCNGG 3 cut(s) 250, 251, 953
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 2 cut(s) 130, 270
TaiI ACGT 1 cut(s) 44
TaqI TCGA 5 cut(s) 346, 604, 666, 1016, 1075
TasI AATT 5 cut(s) 150, 453, 545, 706, 918
TatI WGTACW 1 cut(s) 599
TfiI GAWTC 8 cut(s) 188, 517, 668, 797, 808, 842, 964, 979
Tru1I TTAA 5 cut(s) 44, 153, 384, 392, 858
Tru9I TTAA 5 cut(s) 44, 153, 384, 392, 858
TscAI CASTG 4 cut(s) 133, 275, 433, 502
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 3 cut(s) 216, 616, 986
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 3 cut(s) 149, 315, 864
TspGWI ACGGA 1 cut(s) 7
TspMI CCCGGG 1 cut(s) 251
TspRI CASTG 4 cut(s) 133, 275, 433, 502
Van91I CCANNNNNTGG 1 cut(s) 289
VpaK11BI GGWCC 2 cut(s) 480, 702
VspI ATTAAT 1 cut(s) 153
XapI RAATTY 1 cut(s) 545
XbaI TCTAGA 1 cut(s) 847
XceI RCATGY 2 cut(s) 263, 1090
XcmI CCANNNNNNNNNTGG 2 cut(s) 532, 1018
XmaI CCCGGG 1 cut(s) 251
XmnI GAANNNNTTC 2 cut(s) 419, 963
XspI CTAG 3 cut(s) 30, 227, 848
ZrmI AGTACT 1 cut(s) 601
Zsp2I ATGCAT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.