Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 2 - 105 | 4.9e-19 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 353 |
| AciI | CCGC | 2 cut(s) | 305, 407 |
| AclWI | GGATC | 2 cut(s) | 18, 39 |
| AcsI | RAATTY | 1 cut(s) | 121 |
| AfaI | GTAC | 1 cut(s) | 209 |
| AflIII | ACRYGT | 1 cut(s) | 186 |
| AgsI | TTSAA | 2 cut(s) | 120, 385 |
| AleI | CACNNNNGTG | 1 cut(s) | 18 |
| AluBI | AGCT | 3 cut(s) | 60, 170, 416 |
| AluI | AGCT | 3 cut(s) | 60, 170, 416 |
| Alw26I | GTCTC | 1 cut(s) | 245 |
| AlwI | GGATC | 2 cut(s) | 18, 39 |
| Ama87I | CYCGRG | 1 cut(s) | 276 |
| AoxI | GGCC | 1 cut(s) | 394 |
| ApeKI | GCWGC | 1 cut(s) | 57 |
| ApoI | RAATTY | 1 cut(s) | 121 |
| AseI | ATTAAT | 1 cut(s) | 102 |
| AspLEI | GCGC | 1 cut(s) | 355 |
| AsuHPI | GGTGA | 1 cut(s) | 172 |
| AvaI | CYCGRG | 1 cut(s) | 276 |
| BbsI | GAAGAC | 1 cut(s) | 326 |
| BbvI | GCAGC | 1 cut(s) | 69 |
| BccI | CCATC | 4 cut(s) | 89, 255, 336, 370 |
| BceAI | ACGGC | 2 cut(s) | 394, 409 |
| BcoDI | GTCTC | 1 cut(s) | 245 |
| BisI | GCNGC | 2 cut(s) | 58, 306 |
| BlsI | GCNGC | 2 cut(s) | 59, 307 |
| BmeT110I | CYCGRG | 1 cut(s) | 276 |
| BmsI | GCATC | 1 cut(s) | 139 |
| BpiI | GAAGAC | 1 cut(s) | 326 |
| BsaWI | WCCGGW | 1 cut(s) | 17 |
| BseGI | GGATG | 1 cut(s) | 362 |
| BseRI | GAGGAG | 1 cut(s) | 233 |
| BseXI | GCAGC | 1 cut(s) | 69 |
| BsgI | GTGCAG | 1 cut(s) | 42 |
| Bsh1236I | CGCG | 1 cut(s) | 353 |
| BshFI | GGCC | 1 cut(s) | 396 |
| BsiHKCI | CYCGRG | 1 cut(s) | 276 |
| BsiSI | CCGG | 1 cut(s) | 18 |
| BsmAI | GTCTC | 1 cut(s) | 245 |
| BsnI | GGCC | 1 cut(s) | 396 |
| BsoBI | CYCGRG | 1 cut(s) | 276 |
| Bsp143I | GATC | 3 cut(s) | 10, 44, 216 |
| BspACI | CCGC | 2 cut(s) | 305, 407 |
| BspANI | GGCC | 1 cut(s) | 396 |
| BspFNI | CGCG | 1 cut(s) | 353 |
| BspPI | GGATC | 2 cut(s) | 18, 39 |
| BssMI | GATC | 3 cut(s) | 10, 44, 216 |
| Bst4CI | ACNGT | 1 cut(s) | 52 |
| Bst6I | CTCTTC | 1 cut(s) | 216 |
| BstC8I | GCNNGC | 1 cut(s) | 315 |
| BstF5I | GGATG | 1 cut(s) | 362 |
| BstFNI | CGCG | 1 cut(s) | 353 |
| BstHHI | GCGC | 1 cut(s) | 355 |
| BstKTI | GATC | 3 cut(s) | 13, 47, 219 |
| BstMAI | GTCTC | 1 cut(s) | 245 |
| BstMBI | GATC | 3 cut(s) | 10, 44, 216 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 302, 314 |
| BstNSI | RCATGY | 1 cut(s) | 190 |
| BstUI | CGCG | 1 cut(s) | 353 |
| BstV1I | GCAGC | 1 cut(s) | 69 |
| BstV2I | GAAGAC | 1 cut(s) | 326 |
| BsuRI | GGCC | 1 cut(s) | 396 |
| BtsCI | GGATG | 1 cut(s) | 362 |
| BtsI | GCAGTG | 2 cut(s) | 30, 93 |
| BtsIMutI | CAGTG | 3 cut(s) | 30, 48, 93 |
| Cac8I | GCNNGC | 1 cut(s) | 315 |
| CfoI | GCGC | 1 cut(s) | 355 |
| Csp6I | GTAC | 1 cut(s) | 208 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 348, 383 |
| CviAII | CATG | 1 cut(s) | 187 |
| CviJI | RGCY | 6 cut(s) | 60, 116, 170, 308, 396, 416 |
| CviKI_1 | RGCY | 6 cut(s) | 60, 116, 170, 308, 396, 416 |
| CviQI | GTAC | 1 cut(s) | 208 |
| DpnI | GATC | 3 cut(s) | 12, 46, 218 |
| DpnII | GATC | 3 cut(s) | 10, 44, 216 |
| Eam1104I | CTCTTC | 1 cut(s) | 216 |
| EarI | CTCTTC | 1 cut(s) | 216 |
| EciI | GGCGGA | 1 cut(s) | 396 |
| Eco88I | CYCGRG | 1 cut(s) | 276 |
| EcoT22I | ATGCAT | 1 cut(s) | 154 |
| FaeI | CATG | 1 cut(s) | 190 |
| FaiI | YATR | 3 cut(s) | 55, 188, 424 |
| FatI | CATG | 1 cut(s) | 186 |
| Fnu4HI | GCNGC | 2 cut(s) | 58, 306 |
| FokI | GGATG | 1 cut(s) | 349 |
| Fsp4HI | GCNGC | 2 cut(s) | 58, 306 |
| GlaI | GCGC | 1 cut(s) | 354 |
| GluI | GCNGC | 2 cut(s) | 58, 306 |
| HaeIII | GGCC | 1 cut(s) | 396 |
| HapII | CCGG | 1 cut(s) | 18 |
| HhaI | GCGC | 1 cut(s) | 355 |
| Hin1II | CATG | 1 cut(s) | 190 |
| Hin6I | GCGC | 1 cut(s) | 353 |
| HinP1I | GCGC | 1 cut(s) | 353 |
| HinfI | GANTC | 5 cut(s) | 4, 143, 238, 256, 271 |
| HpaII | CCGG | 1 cut(s) | 18 |
| HphI | GGTGA | 1 cut(s) | 172 |
| Hpy188I | TCNGA | 2 cut(s) | 148, 216 |
| Hpy188III | TCNNGA | 4 cut(s) | 8, 127, 175, 385 |
| Hpy99I | CGWCG | 1 cut(s) | 208 |
| HpyAV | CCTTC | 1 cut(s) | 319 |
| HpyCH4III | ACNGT | 1 cut(s) | 52 |
| HpyCH4IV | ACGT | 1 cut(s) | 206 |
| HpyCH4V | TGCA | 4 cut(s) | 23, 57, 74, 152 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 302, 314 |
| HpySE526I | ACGT | 1 cut(s) | 206 |
| Hsp92II | CATG | 1 cut(s) | 190 |
| HspAI | GCGC | 1 cut(s) | 353 |
| Kzo9I | GATC | 3 cut(s) | 10, 44, 216 |
| LpnPI | CCDG | 2 cut(s) | 31, 140 |
| Lsp1109I | GCAGC | 1 cut(s) | 69 |
| LweI | GCATC | 1 cut(s) | 139 |
| MaeII | ACGT | 1 cut(s) | 206 |
| MalI | GATC | 3 cut(s) | 12, 46, 218 |
| MboI | GATC | 3 cut(s) | 10, 44, 216 |
| MboII | GAAGA | 3 cut(s) | 233, 243, 326 |
| MluCI | AATT | 2 cut(s) | 39, 121 |
| MlyI | GAGTC | 1 cut(s) | 247 |
| MnlI | CCTC | 3 cut(s) | 222, 254, 407 |
| Mph1103I | ATGCAT | 1 cut(s) | 154 |
| MseI | TTAA | 1 cut(s) | 102 |
| MslI | CAYNNNNRTG | 1 cut(s) | 18 |
| MspA1I | CMGCKG | 1 cut(s) | 305 |
| MspI | CCGG | 1 cut(s) | 18 |
| MvnI | CGCG | 1 cut(s) | 353 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 302, 314 |
| NdeII | GATC | 3 cut(s) | 10, 44, 216 |
| NlaIII | CATG | 1 cut(s) | 190 |
| NsiI | ATGCAT | 1 cut(s) | 154 |
| NspI | RCATGY | 1 cut(s) | 190 |
| OliI | CACNNNNGTG | 1 cut(s) | 18 |
| PciI | ACATGT | 1 cut(s) | 186 |
| PfeI | GAWTC | 4 cut(s) | 4, 143, 256, 271 |
| PkrI | GCNGC | 2 cut(s) | 59, 307 |
| PleI | GAGTC | 1 cut(s) | 246 |
| PpsI | GAGTC | 1 cut(s) | 246 |
| PscI | ACATGT | 1 cut(s) | 186 |
| PshBI | ATTAAT | 1 cut(s) | 102 |
| RsaI | GTAC | 1 cut(s) | 209 |
| RsaNI | GTAC | 1 cut(s) | 208 |
| RseI | CAYNNNNRTG | 1 cut(s) | 18 |
| SaqAI | TTAA | 1 cut(s) | 102 |
| SatI | GCNGC | 2 cut(s) | 58, 306 |
| Sau3AI | GATC | 3 cut(s) | 10, 44, 216 |
| SchI | GAGTC | 1 cut(s) | 247 |
| SetI | ASST | 5 cut(s) | 62, 172, 209, 330, 418 |
| SfaNI | GCATC | 1 cut(s) | 139 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 18 |
| Sse9I | AATT | 2 cut(s) | 39, 121 |
| SsiI | CCGC | 2 cut(s) | 305, 407 |
| TaaI | ACNGT | 1 cut(s) | 52 |
| TaiI | ACGT | 1 cut(s) | 209 |
| TaqI | TCGA | 3 cut(s) | 43, 219, 259 |
| TasI | AATT | 2 cut(s) | 39, 121 |
| TauI | GCSGC | 1 cut(s) | 308 |
| TfiI | GAWTC | 4 cut(s) | 4, 143, 256, 271 |
| Tru1I | TTAA | 1 cut(s) | 102 |
| Tru9I | TTAA | 1 cut(s) | 102 |
| TscAI | CASTG | 3 cut(s) | 30, 55, 93 |
| TseI | GCWGC | 1 cut(s) | 57 |
| TspDTI | ATGAA | 1 cut(s) | 408 |
| TspRI | CASTG | 3 cut(s) | 30, 55, 93 |
| VspI | ATTAAT | 1 cut(s) | 102 |
| XapI | RAATTY | 1 cut(s) | 121 |
| XceI | RCATGY | 1 cut(s) | 190 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 325 |
| Zsp2I | ATGCAT | 1 cut(s) | 154 |