RLG00000013729

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000093
Physical Location & Seq
Reverse (-)
37040390 .. 37045498
5109 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013729

Sequence Viewer

Length: 1419 bp
ATGGGGAGAAGATCCAACCTGAAAAAACATCAGTCTTGGCTTGATCGGTCAGCTAGGGTTCATCGGAAAAAGCCGAGAACGAGGAGGGTCACGGGTCCGGGATTAGGCGCCCTTTACGGGACACGCGCTGGCTCAACCAATCAAACCTATGAACGCAGACCTGACTCGTCTGTCCTGATTAGAGATGTGACTGATCTTCTGATCACTGAACCGGATGACACTAACTCTTCCTTCGAGGATTCAAATTGTCAAATCCCTCCTGTGAGGCCTCGAAGCTCAAGGTTCCTTCTGCCCCCTACCCCACTTACGAGTATCCCTTCGACCATAAAGGTAAGTCCTTACCCTAGTCCCAACTGGTGGAAACTTCCTGTCACGACCACTAAGACCCACTTTGAGTGGTCAAACAAAGCCAACTGTCCAAGCACAATTACCACCTCTCACTTCAAAAGGCCTAATAAGCTTTTAACCCAAACCTATGACCCTCAGAACCCAAATTTACTGCCCCCACATCCTGCCCAAAGCCTTACCTCCCCGAGCCGTTCTTCCCTAGAGGGGGTGGATATCCTTAGTGGACACGTGGGTCAGGTTCCTATTTGTGCCTCTCTGAAAGGGAAAGAAGTGGCCCATCCCTCGCCTCTAACATTACCTGTTCCAAAAGACCGCAACCCCGGCAACCCCCTCCCCAACACTCATCCTTCTGTCTCTCCAACTAACTCACAATCCCATTCTCACACTTCAGCTAAGAGACTTTGCTCGCAATTAGACCCAGCCACAACCACTAGAAAAACCATATCTAAACTAAACCTTAACCGTGGGTCTACCCAGAGTTCCTTTGATAGTCGTGACCAGCCCAACAGTGGAGGTTTGGTCAAGGGAAGAGGCCGTCCCCGTGGTAGAGGTATGGGGAAGAGAGGTGGCAGGATTGGTCTTCATTCCTCTAGAGATAGTATTGGTACTTGTGGCATTAACAAGGGTATTTGGAAACACAGATGTGATGTTGTCATGAGGCATGGGGCACCCAATCGAGGGACTGCGATTGAATGCATTAATAGAAGCCTTGGTGAGAGGCTGAATGCATCGGGATTGTTGGACAGAGCTCCCGGTTCAGATACAACCCTAGGTCCCATCCCTACATGGCAGCCTCCTTCCTTTCCTTCTGTTAAAGTTAATGTTGATGGAGCGTGGGATAAAGTCACCCACAAAAGCGTTATTGGGGTGATAATAAGGAATCATAGAGGCCATTCAATTGCGGGTGCCAGTATTCTGGGTAATCACAACTCTCCCATTGAAGTTGAGTTAAATGTAGTGGTCATTGGCCTTCAGCTTGCTGCGTTCCTTAAAATCCAAAATATTATCATGGAAGGTGATTGTCAGGAGCTTGTTCCTGCTCTCGTTAACTCCTCTTCCTCTCCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

473

Amino Acids

51.28

Weight (kDa)

10.36

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 390 - 468 1e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 170, 579
AccB1I GGYRCC 3 cut(s) 107, 1015, 1253
AccB7I CCANNNNNTGG 1 cut(s) 357
AccI GTMKAC 1 cut(s) 818
AccII CGCG 1 cut(s) 126
AciI CCGC 2 cut(s) 661, 1250
AclWI GGATC 1 cut(s) 6
AcsI RAATTY 1 cut(s) 493
AcuI CTGAAG 2 cut(s) 720, 1304
AcvI CACGTG 1 cut(s) 577
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 955
AfiI CCNNNNNNNGG 8 cut(s) 104, 117, 357, 552, 553, 857, 1025, 1026
AflIII ACRYGT 1 cut(s) 574
AgsI TTSAA 5 cut(s) 243, 445, 1040, 1245, 1289
AleI CACNNNNGTG 1 cut(s) 990
AluBI AGCT 7 cut(s) 53, 276, 460, 740, 1097, 1324, 1378
AluI AGCT 7 cut(s) 53, 276, 460, 740, 1097, 1324, 1378
Alw21I GWGCWC 1 cut(s) 1099
Alw26I GTCTC 2 cut(s) 706, 739
AlwI GGATC 1 cut(s) 6
Ama87I CYCGRG 1 cut(s) 532
AoxI GGCC 6 cut(s) 266, 449, 621, 880, 1237, 1315
ApeKI GCWGC 2 cut(s) 1138, 1328
ApoI RAATTY 1 cut(s) 493
AseI ATTAAT 1 cut(s) 1047
AspA2I CCTAGG 1 cut(s) 1117
AspLEI GCGC 2 cut(s) 110, 128
AspS9I GGNCC 3 cut(s) 95, 622, 1121
AsuC2I CCSGG 3 cut(s) 99, 669, 1101
AsuHPI GGTGA 4 cut(s) 1073, 1186, 1228, 1376
AvaI CYCGRG 1 cut(s) 532
AvaII GGWCC 2 cut(s) 95, 1121
AvrII CCTAGG 1 cut(s) 1117
BaeGI GKGCMC 1 cut(s) 1018
BanI GGYRCC 3 cut(s) 107, 1015, 1253
BanII GRGCYC 1 cut(s) 1099
BbrPI CACGTG 1 cut(s) 577
BbsI GAAGAC 1 cut(s) 920
Bbv12I GWGCWC 1 cut(s) 1099
BbvI GCAGC 2 cut(s) 1150, 1315
BccI CCATC 3 cut(s) 633, 1133, 1169
BceAI ACGGC 2 cut(s) 522, 867
BciVI GTATCC 1 cut(s) 323
BclI TGATCA 1 cut(s) 201
BcnI CCSGG 3 cut(s) 99, 669, 1101
BcoDI GTCTC 2 cut(s) 706, 739
BfaI CTAG 6 cut(s) 54, 345, 548, 780, 939, 1118
BfoI RGCGCY 1 cut(s) 111
BfuI GTATCC 1 cut(s) 323
BisI GCNGC 2 cut(s) 1139, 1329
BlnI CCTAGG 1 cut(s) 1117
BlsI GCNGC 2 cut(s) 1140, 1330
Bme1390I CCNGG 3 cut(s) 99, 669, 1101
Bme18I GGWCC 2 cut(s) 95, 1121
BmeT110I CYCGRG 1 cut(s) 532
BmgT120I GGNCC 3 cut(s) 95, 622, 1121
BmiI GGNNCC 7 cut(s) 96, 109, 284, 588, 1017, 1123, 1255
BmrFI CCNGG 3 cut(s) 99, 669, 1101
BmsI GCATC 1 cut(s) 1085
BpiI GAAGAC 1 cut(s) 920
BpuEI CTTGAG 1 cut(s) 262
BpuMI CCSGG 3 cut(s) 99, 669, 1101
BsaAI YACGTR 1 cut(s) 577
BsaHI GRCGYC 1 cut(s) 108
BsaJI CCNNGG 5 cut(s) 667, 811, 889, 1057, 1117
BsaWI WCCGGW 1 cut(s) 211
BsaXI ACNNNNNCTCC 2 cut(s) 852, 882
Bsc4I CCNNNNNNNGG 8 cut(s) 104, 117, 357, 552, 553, 857, 1025, 1026
Bse1I ACTGG 2 cut(s) 359, 1257
BseDI CCNNGG 5 cut(s) 667, 811, 889, 1057, 1117
BseGI GGATG 5 cut(s) 220, 508, 625, 691, 1125
BseLI CCNNNNNNNGG 8 cut(s) 104, 117, 357, 552, 553, 857, 1025, 1026
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 2 cut(s) 359, 1257
BseRI GAGGAG 2 cut(s) 97, 1390
BseSI GKGCMC 1 cut(s) 1018
BseXI GCAGC 2 cut(s) 1150, 1315
BseYI CCCAGC 1 cut(s) 766
Bsh1236I CGCG 1 cut(s) 126
BshFI GGCC 6 cut(s) 268, 451, 623, 882, 1239, 1317
BshNI GGYRCC 3 cut(s) 107, 1015, 1253
BsiHKAI GWGCWC 1 cut(s) 1099
BsiHKCI CYCGRG 1 cut(s) 532
BsiSI CCGG 4 cut(s) 98, 212, 669, 1101
BslFI GGGAC 5 cut(s) 133, 333, 870, 1042, 1107
BslI CCNNNNNNNGG 8 cut(s) 104, 117, 357, 552, 553, 857, 1025, 1026
BsmAI GTCTC 2 cut(s) 706, 739
BsmFI GGGAC 5 cut(s) 133, 333, 870, 1042, 1107
BsmI GAATGC 2 cut(s) 1046, 1078
BsnI GGCC 6 cut(s) 268, 451, 623, 882, 1239, 1317
BsoBI CYCGRG 1 cut(s) 532
Bsp1286I GDGCHC 2 cut(s) 1018, 1099
Bsp143I GATC 4 cut(s) 11, 43, 193, 201
BspACI CCGC 2 cut(s) 661, 1250
BspANI GGCC 6 cut(s) 268, 451, 623, 882, 1239, 1317
BspCNI CTCAG 1 cut(s) 496
BspFNI CGCG 1 cut(s) 126
BspHI TCATGA 1 cut(s) 1002
BspLI GGNNCC 7 cut(s) 96, 109, 284, 588, 1017, 1123, 1255
BspPI GGATC 1 cut(s) 6
BspT107I GGYRCC 3 cut(s) 107, 1015, 1253
BsrI ACTGG 2 cut(s) 359, 1257
BssECI CCNNGG 5 cut(s) 667, 811, 889, 1057, 1117
BssMI GATC 4 cut(s) 11, 43, 193, 201
BssNI GRCGYC 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 1057, 1117
Bst4CI ACNGT 3 cut(s) 416, 812, 857
Bst6I CTCTTC 4 cut(s) 232, 871, 902, 1408
BstACI GRCGYC 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 577
BstC8I GCNNGC 3 cut(s) 130, 755, 1326
BstDEI CTNAG 4 cut(s) 381, 483, 566, 741
BstDSI CCRYGG 2 cut(s) 811, 889
BstF5I GGATG 5 cut(s) 220, 508, 625, 691, 1125
BstFNI CGCG 1 cut(s) 126
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 2 cut(s) 110, 128
BstKTI GATC 4 cut(s) 14, 46, 196, 204
BstMAI GTCTC 2 cut(s) 706, 739
BstMBI GATC 4 cut(s) 11, 43, 193, 201
BstMWI GCNNNNNNNGC 2 cut(s) 457, 669
BstSCI CCNGG 3 cut(s) 97, 667, 1099
BstSLI GKGCMC 1 cut(s) 1018
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 1150, 1315
BstV2I GAAGAC 1 cut(s) 920
BstX2I RGATCY 1 cut(s) 11
BstXI CCANNNNNNTGG 1 cut(s) 1264
BstYI RGATCY 1 cut(s) 11
BsuI GTATCC 1 cut(s) 323
BsuRI GGCC 6 cut(s) 268, 451, 623, 882, 1239, 1317
BtgI CCRYGG 2 cut(s) 811, 889
BtsCI GGATG 5 cut(s) 220, 508, 625, 691, 1125
BtsIMutI CAGTG 2 cut(s) 204, 862
Cac8I GCNNGC 3 cut(s) 130, 755, 1326
CciI TCATGA 1 cut(s) 1002
CfoI GCGC 2 cut(s) 110, 128
Cfr13I GGNCC 3 cut(s) 95, 622, 1121
Csp6I GTAC 1 cut(s) 954
CviAII CATG 4 cut(s) 1003, 1010, 1134, 1357
CviQI GTAC 1 cut(s) 954
DdeI CTNAG 4 cut(s) 381, 483, 566, 741
DinI GGCGCC 1 cut(s) 109
DpnI GATC 4 cut(s) 13, 45, 195, 203
DpnII GATC 4 cut(s) 11, 43, 193, 201
DrdI GACNNNNNNGTC 2 cut(s) 170, 579
DseDI GACNNNNNNGTC 2 cut(s) 170, 579
Eam1104I CTCTTC 4 cut(s) 232, 871, 902, 1408
EarI CTCTTC 4 cut(s) 232, 871, 902, 1408
Ecl136II GAGCTC 1 cut(s) 1097
Eco130I CCWWGG 2 cut(s) 1057, 1117
Eco147I AGGCCT 2 cut(s) 268, 451
Eco24I GRGCYC 1 cut(s) 1099
Eco32I GATATC 1 cut(s) 562
Eco47I GGWCC 2 cut(s) 95, 1121
Eco53kI GAGCTC 1 cut(s) 1097
Eco57I CTGAAG 2 cut(s) 720, 1304
Eco72I CACGTG 1 cut(s) 577
Eco88I CYCGRG 1 cut(s) 532
EcoICRI GAGCTC 1 cut(s) 1097
EcoO109I RGGNCCY 1 cut(s) 1121
EcoRV GATATC 1 cut(s) 562
EcoT14I CCWWGG 2 cut(s) 1057, 1117
EcoT22I ATGCAT 2 cut(s) 1046, 1078
EcoT38I GRGCYC 1 cut(s) 1099
EgeI GGCGCC 1 cut(s) 109
EheI GGCGCC 1 cut(s) 109
ErhI CCWWGG 2 cut(s) 1057, 1117
FaeI CATG 4 cut(s) 1006, 1013, 1137, 1360
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 5 cut(s) 133, 333, 870, 1042, 1107
FatI CATG 4 cut(s) 1002, 1009, 1133, 1356
FauI CCCGC 1 cut(s) 1243
FbaI TGATCA 1 cut(s) 201
FblI GTMKAC 1 cut(s) 818
Fnu4HI GCNGC 2 cut(s) 1139, 1329
FokI GGATG 5 cut(s) 227, 495, 612, 678, 1112
FriOI GRGCYC 1 cut(s) 1099
Fsp4HI GCNGC 2 cut(s) 1139, 1329
FspBI CTAG 6 cut(s) 54, 345, 548, 780, 939, 1118
GlaI GCGC 2 cut(s) 109, 127
GluI GCNGC 2 cut(s) 1139, 1329
GsaI CCCAGC 1 cut(s) 770
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 6 cut(s) 268, 451, 623, 882, 1239, 1317
HapII CCGG 4 cut(s) 98, 212, 669, 1101
HhaI GCGC 2 cut(s) 110, 128
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 4 cut(s) 1006, 1013, 1137, 1360
Hin6I GCGC 2 cut(s) 108, 126
HinP1I GCGC 2 cut(s) 108, 126
HincII GTYRAC 1 cut(s) 1396
HindII GTYRAC 1 cut(s) 1396
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 3 cut(s) 164, 239, 1228
HpaI GTTAAC 1 cut(s) 1396
HpaII CCGG 4 cut(s) 98, 212, 669, 1101
HphI GGTGA 4 cut(s) 1073, 1186, 1228, 1376
Hpy166II GTNNAC 3 cut(s) 572, 819, 1396
Hpy188I TCNGA 5 cut(s) 66, 201, 486, 606, 1108
Hpy188III TCNNGA 7 cut(s) 175, 373, 842, 939, 1003, 1080, 1373
Hpy8I GTNNAC 3 cut(s) 572, 819, 1396
HpyAV CCTTC 8 cut(s) 241, 296, 327, 705, 1155, 1164, 1328, 1355
HpyCH4III ACNGT 3 cut(s) 416, 812, 857
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 2 cut(s) 1044, 1076
HpyF10VI GCNNNNNNNGC 2 cut(s) 457, 669
HpyF3I CTNAG 4 cut(s) 381, 483, 566, 741
HpySE526I ACGT 1 cut(s) 576
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 4 cut(s) 1006, 1013, 1137, 1360
HspAI GCGC 2 cut(s) 108, 126
KasI GGCGCC 1 cut(s) 107
Ksp22I TGATCA 1 cut(s) 201
KspAI GTTAAC 1 cut(s) 1396
Kzo9I GATC 4 cut(s) 11, 43, 193, 201
LmnI GCTCC 3 cut(s) 1102, 1178, 1375
Lsp1109I GCAGC 2 cut(s) 1150, 1315
LweI GCATC 1 cut(s) 1085
MaeI CTAG 6 cut(s) 54, 345, 548, 780, 939, 1118
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 5 cut(s) 88, 187, 370, 842, 1192
MalI GATC 4 cut(s) 13, 45, 195, 203
MboI GATC 4 cut(s) 11, 43, 193, 201
MboII GAAGA 8 cut(s) 21, 188, 219, 534, 888, 919, 920, 1395
MfeI CAATTG 1 cut(s) 1245
MflI RGATCY 1 cut(s) 11
MhlI GDGCHC 2 cut(s) 1018, 1099
MluCI AATT 6 cut(s) 244, 426, 493, 758, 1245, 1414
Mly113I GGCGCC 1 cut(s) 108
MlyI GAGTC 1 cut(s) 158
MmeI TCCRAC 3 cut(s) 39, 731, 1068
Mph1103I ATGCAT 2 cut(s) 1046, 1078
MseI TTAA 9 cut(s) 464, 807, 966, 1047, 1161, 1167, 1298, 1338, 1395
MslI CAYNNNNRTG 1 cut(s) 990
MspI CCGG 4 cut(s) 98, 212, 669, 1101
MspR9I CCNGG 3 cut(s) 99, 669, 1101
MunI CAATTG 1 cut(s) 1245
Mva1269I GAATGC 2 cut(s) 1046, 1078
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 457, 669
NarI GGCGCC 1 cut(s) 108
NciI CCSGG 3 cut(s) 99, 669, 1101
NdeII GATC 4 cut(s) 11, 43, 193, 201
NlaIII CATG 4 cut(s) 1006, 1013, 1137, 1360
NlaIV GGNNCC 7 cut(s) 96, 109, 284, 588, 1017, 1123, 1255
NmeAIII GCCGAG 1 cut(s) 99
NmuCI GTSAC 5 cut(s) 88, 187, 370, 842, 1192
NsiI ATGCAT 2 cut(s) 1046, 1078
OliI CACNNNNGTG 1 cut(s) 990
PagI TCATGA 1 cut(s) 1002
PceI AGGCCT 2 cut(s) 268, 451
PctI GAATGC 2 cut(s) 1046, 1078
PfeI GAWTC 2 cut(s) 239, 1228
PflMI CCANNNNNTGG 1 cut(s) 357
PfoI TCCNGGA 1 cut(s) 97
PkrI GCNGC 2 cut(s) 1140, 1330
PleI GAGTC 1 cut(s) 158
PluTI GGCGCC 1 cut(s) 111
PmaCI CACGTG 1 cut(s) 577
PmlI CACGTG 1 cut(s) 577
PpsI GAGTC 1 cut(s) 158
Ppu21I YACGTR 1 cut(s) 577
PpuMI RGGWCCY 1 cut(s) 1121
PshBI ATTAAT 1 cut(s) 1047
Psp124BI GAGCTC 1 cut(s) 1099
Psp5II RGGWCCY 1 cut(s) 1121
PspCI CACGTG 1 cut(s) 577
PspFI CCCAGC 1 cut(s) 766
PspN4I GGNNCC 7 cut(s) 96, 109, 284, 588, 1017, 1123, 1255
PspPI GGNCC 3 cut(s) 95, 622, 1121
PspPPI RGGWCCY 1 cut(s) 1121
PsuI RGATCY 1 cut(s) 11
RsaI GTAC 1 cut(s) 955
RsaNI GTAC 1 cut(s) 954
RseI CAYNNNNRTG 1 cut(s) 990
SacI GAGCTC 1 cut(s) 1099
SaqAI TTAA 9 cut(s) 464, 807, 966, 1047, 1161, 1167, 1298, 1338, 1395
SatI GCNGC 2 cut(s) 1139, 1329
Sau3AI GATC 4 cut(s) 11, 43, 193, 201
Sau96I GGNCC 3 cut(s) 95, 622, 1121
SchI GAGTC 1 cut(s) 158
ScrFI CCNGG 3 cut(s) 99, 669, 1101
SduI GDGCHC 2 cut(s) 1018, 1099
SfaNI GCATC 1 cut(s) 1085
SfoI GGCGCC 1 cut(s) 109
SinI GGWCC 2 cut(s) 95, 1121
SmiMI CAYNNNNRTG 1 cut(s) 990
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 6 cut(s) 244, 426, 493, 758, 1245, 1414
SseBI AGGCCT 2 cut(s) 268, 451
SsiI CCGC 2 cut(s) 661, 1250
SspDI GGCGCC 1 cut(s) 107
SspI AATATT 1 cut(s) 1351
SspMI CTAG 6 cut(s) 54, 345, 548, 780, 939, 1118
SstI GAGCTC 1 cut(s) 1099
StuI AGGCCT 2 cut(s) 268, 451
StyD4I CCNGG 3 cut(s) 97, 667, 1099
StyI CCWWGG 2 cut(s) 1057, 1117
TaaI ACNGT 3 cut(s) 416, 812, 857
TaiI ACGT 1 cut(s) 579
TaqI TCGA 4 cut(s) 234, 271, 320, 1024
TaqII GACCGA 1 cut(s) 36
TasI AATT 6 cut(s) 244, 426, 493, 758, 1245, 1414
TfiI GAWTC 2 cut(s) 239, 1228
Tru1I TTAA 9 cut(s) 464, 807, 966, 1047, 1161, 1167, 1298, 1338, 1395
Tru9I TTAA 9 cut(s) 464, 807, 966, 1047, 1161, 1167, 1298, 1338, 1395
TscAI CASTG 2 cut(s) 211, 862
TseFI GTSAC 5 cut(s) 88, 187, 370, 842, 1192
TseI GCWGC 2 cut(s) 1138, 1328
Tsp45I GTSAC 5 cut(s) 88, 187, 370, 842, 1192
TspDTI ATGAA 3 cut(s) 50, 165, 920
TspRI CASTG 2 cut(s) 211, 862
Van91I CCANNNNNTGG 1 cut(s) 357
VpaK11BI GGWCC 2 cut(s) 95, 1121
VspI ATTAAT 1 cut(s) 1047
XapI RAATTY 1 cut(s) 493
XbaI TCTAGA 1 cut(s) 938
XcmI CCANNNNNNNNNTGG 1 cut(s) 854
XmaJI CCTAGG 1 cut(s) 1117
XmiI GTMKAC 1 cut(s) 818
XspI CTAG 6 cut(s) 54, 345, 548, 780, 939, 1118
Zsp2I ATGCAT 2 cut(s) 1046, 1078
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.