Rw7G012440

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000093
Physical Location & Seq
Forward (+)
11734349 .. 11740223
5875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G012440.1

Sequence Viewer

Length: 1368 bp
ATGCTCACACAAATCATCCAACCTGAAGTTCTTTTCCACGCCCCTCAAGCTTCGGAGATTCCTCCTAATCAACCTTCAATTCTCCTCCCTCCTCTCCCCAGAAGAGCTGGAGTCCTCACTATCAATGAGCCAACTCATCACCCAGTTTTTGAAGGAGATGCAAATATGTTGGATGCACATCTGGGTAGCCAAACTGAGGCACTTAGGATTACCTCGGGCCCAATGGATAAGAGGAAAGCAAAAATGTTCGATGAGCAAATGGAGGCCATTCTTCTTGCAAATCCTTTCCTCAGGCCCAATCCTTCCCCGATACCACCTGATGTCCCTCTGGATTATCAATCACATCACATGCTTAATCACTCCTCCATTTCACAAAACATATCATTTACTGATCTAGCTAGCCCATCTACTCTGAACTTTGAAGATCCGACCCAACTCTTCCAACCCACTCCTCCCATAGAACCCACTGATGACCCTTTCTACAACTACATGTCATCCTCTCTGTATCCCGATGTTTACATTCCTTCCCAATTTCCCCGATCAACCCCTCCTTCATATGATCTCCTTCCCATCTCAGATCCCCTATCCGCCACAGTTTTCACTGAATCACCTCTTCTCAATGTTTCACCAACATATCCACCCACTGATGTCACCTCCCATATCTCCTCCACAGAATCTACCATCACTCTTATCTCATCCAATTTCCAGCAGCTTAATCTCAAAAGATTGGGGTCAGAAGTTGAAGACATTCCATCGCCCAAGCGCCCATGTCTTGTTGATCTTCCTGGTGAAGAAGCTGATGATCCTATCCTCAGTTCCCTTATCAAGGGCCGCGATCGTGGCCAGGGTGGCCGGGGCCGTAATACTGCAAAAGGAGGCCTCGCTGGACGGGGCCGAGCTGCTAGCTCCTCTCATTCTTCCTTCTCTCAGGATCGGGAAACCCAATATCATGGGACCATTATTCAAGATACCACAACCATTGACACCTGGTCTCCTCCCCCTGCTCTTTGTTTCAAAGTAAATACTGATGCTTCTTGGAATGGAAATTCCGTCTCTGGTGGTATTGCAGTTGTTGTGCGTGATGATATGGGAAGAATTGTTGATGGTTTTGCGGGTATATCTCCAGCCATTTCACCACTAGCGGCTGAGCTCCTTGCAATCTGTGAAGCCTTGGTTCTTATTGCAAAGCTTCCTCCTTGCCCGGTCATTCTGGCATCGGATTCTATCACTCTTATTCAGGCTCTAAATAGTCGATGGCTAGATGCTATCGACACTGAACGCCCTAGAAGATGGGACAGTGAGAATGATTTGTGCTTCAACAGTACTGTTGCAGGAGATGAGATCAAAACCTGGATAGCCACAACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

455

Amino Acids

49.51

Weight (kDa)

4.74

Isoelectric Point (pI)

59.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 341 - 419 2.2e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 834
AciI CCGC 4 cut(s) 588, 832, 1112, 1142
AclWI GGATC 4 cut(s) 419, 572, 797, 939
AcoI YGGCCR 2 cut(s) 841, 850
AcsI RAATTY 1 cut(s) 1045
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 1324
AfiI CCNNNNNNNGG 2 cut(s) 196, 826
AflIII ACRYGT 1 cut(s) 489
AgsI TTSAA 7 cut(s) 78, 152, 422, 743, 965, 1015, 1318
AhdI GACNNNNNGTC 1 cut(s) 988
AjnI CCWGG 4 cut(s) 784, 843, 986, 1349
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 9 cut(s) 50, 107, 398, 712, 797, 899, 906, 1150, 1189
AluI AGCT 9 cut(s) 50, 107, 398, 712, 797, 899, 906, 1150, 1189
Alw21I GWGCWC 1 cut(s) 1152
Alw26I GTCTC 2 cut(s) 996, 1057
AlwI GGATC 4 cut(s) 419, 572, 797, 939
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 9 cut(s) 217, 264, 293, 829, 841, 850, 856, 877, 892
ApaI GGGCCC 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 709, 899
ApoI RAATTY 1 cut(s) 1045
Asp700I GAANNNNTTC 1 cut(s) 747
AspLEI GCGC 1 cut(s) 765
AspS9I GGNCC 7 cut(s) 217, 218, 294, 829, 856, 892, 954
AsuC2I CCSGG 2 cut(s) 854, 1202
AsuHPI GGTGA 6 cut(s) 131, 600, 618, 643, 800, 1125
AsuNHI GCTAGC 2 cut(s) 398, 902
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 1 cut(s) 954
AxyI CCTNAGG 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 221
BalI TGGCCA 1 cut(s) 843
BanII GRGCYC 2 cut(s) 221, 1152
BbsI GAAGAC 1 cut(s) 750
Bbv12I GWGCWC 1 cut(s) 1152
BbvI GCAGC 2 cut(s) 721, 886
BccI CCATC 7 cut(s) 412, 578, 689, 760, 1097, 1248, 1284
BceAI ACGGC 1 cut(s) 843
BciT130I CCWGG 4 cut(s) 786, 845, 988, 1351
BciVI GTATCC 1 cut(s) 516
BcnI CCSGG 2 cut(s) 854, 1202
BcoDI GTCTC 2 cut(s) 996, 1057
BfaI CTAG 6 cut(s) 395, 399, 903, 1139, 1259, 1284
BfoI RGCGCY 1 cut(s) 766
BfuI GTATCC 1 cut(s) 516
BglI GCCNNNNNGGC 1 cut(s) 849
BisI GCNGC 4 cut(s) 710, 832, 900, 1143
BlpI GCTNAGC 1 cut(s) 1146
BlsI GCNGC 4 cut(s) 711, 833, 901, 1144
BmcAI AGTACT 1 cut(s) 1324
Bme1390I CCNGG 6 cut(s) 786, 845, 854, 988, 1202, 1351
Bme18I GGWCC 1 cut(s) 954
BmeRI GACNNNNNGTC 1 cut(s) 988
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 7 cut(s) 217, 218, 294, 829, 856, 892, 954
BmiI GGNNCC 4 cut(s) 219, 857, 893, 955
BmrFI CCNGG 6 cut(s) 786, 845, 854, 988, 1202, 1351
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 5 cut(s) 148, 163, 1018, 1223, 1252
BmtI GCTAGC 2 cut(s) 402, 906
BmuI ACTGGG 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 750
BpmI CTGGAG 2 cut(s) 129, 1107
Bpu1102I GCTNAGC 1 cut(s) 1146
BpuEI CTTGAG 1 cut(s) 30
BpuMI CCSGG 2 cut(s) 854, 1202
BsaBI GATNNNNATC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 996
BsaJI CCNNGG 4 cut(s) 213, 844, 853, 1170
BsaXI ACNNNNNCTCC 2 cut(s) 976, 1006
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 826
Bse1I ACTGG 1 cut(s) 143
Bse21I CCTNAGG 1 cut(s) 290
Bse8I GATNNNNATC 1 cut(s) 177
BseBI CCWGG 4 cut(s) 786, 845, 988, 1351
BseDI CCNNGG 4 cut(s) 213, 844, 853, 1170
BseGI GGATG 4 cut(s) 15, 178, 494, 695
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 2 cut(s) 196, 826
BseMII CTCAG 6 cut(s) 186, 304, 588, 826, 941, 1137
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 7 cut(s) 74, 81, 352, 441, 655, 898, 984
BseSI GKGCMC 1 cut(s) 221
BseXI GCAGC 2 cut(s) 721, 886
Bsh1236I CGCG 1 cut(s) 834
Bsh1285I CGRYCG 1 cut(s) 838
BshFI GGCC 9 cut(s) 219, 266, 295, 831, 843, 852, 858, 879, 894
BsiEI CGRYCG 1 cut(s) 838
BsiHKAI GWGCWC 1 cut(s) 1152
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 2 cut(s) 853, 1202
BslFI GGGAC 3 cut(s) 308, 967, 1307
BslI CCNNNNNNNGG 2 cut(s) 196, 826
BsmAI GTCTC 2 cut(s) 996, 1057
BsmBI CGTCTC 1 cut(s) 1057
BsmFI GGGAC 3 cut(s) 308, 967, 1307
BsnI GGCC 9 cut(s) 219, 266, 295, 831, 843, 852, 858, 879, 894
Bso31I GGTCTC 1 cut(s) 996
BsoBI CYCGRG 1 cut(s) 214
Bsp120I GGGCCC 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 221, 1152
Bsp1720I GCTNAGC 1 cut(s) 1146
BspACI CCGC 4 cut(s) 588, 832, 1112, 1142
BspANI GGCC 9 cut(s) 219, 266, 295, 831, 843, 852, 858, 879, 894
BspCNI CTCAG 6 cut(s) 187, 303, 587, 825, 940, 1138
BspFNI CGCG 1 cut(s) 834
BspLI GGNNCC 4 cut(s) 219, 857, 893, 955
BspOI GCTAGC 2 cut(s) 402, 906
BspPI GGATC 4 cut(s) 419, 572, 797, 939
BspQI GCTCTTC 1 cut(s) 97
BspTNI GGTCTC 1 cut(s) 996
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 4 cut(s) 213, 844, 853, 1170
BssT1I CCWWGG 1 cut(s) 1170
Bst2UI CCWGG 4 cut(s) 786, 845, 988, 1351
Bst4CI ACNGT 4 cut(s) 595, 1298, 1322, 1327
Bst6I CTCTTC 3 cut(s) 97, 443, 618
BstC8I GCNNGC 2 cut(s) 400, 904
BstDEI CTNAG 8 cut(s) 195, 203, 290, 574, 812, 927, 1146, 1365
BstENI CCTNNNNNAGG 1 cut(s) 824
BstF5I GGATG 4 cut(s) 15, 178, 494, 695
BstFNI CGCG 1 cut(s) 834
BstH2I RGCGCY 1 cut(s) 766
BstHHI GCGC 1 cut(s) 765
BstMAI GTCTC 2 cut(s) 996, 1057
BstMCI CGRYCG 1 cut(s) 838
BstMWI GCNNNNNNNGC 3 cut(s) 47, 840, 849
BstNI CCWGG 4 cut(s) 786, 845, 988, 1351
BstNSI RCATGY 2 cut(s) 352, 493
BstSCI CCNGG 6 cut(s) 784, 843, 852, 986, 1200, 1349
BstSLI GKGCMC 1 cut(s) 221
BstUI CGCG 1 cut(s) 834
BstV1I GCAGC 2 cut(s) 721, 886
BstV2I GAAGAC 1 cut(s) 750
BstX2I RGATCY 2 cut(s) 424, 577
BstXI CCANNNNNNTGG 1 cut(s) 950
BstYI RGATCY 2 cut(s) 424, 577
Bsu36I CCTNAGG 1 cut(s) 290
BsuI GTATCC 1 cut(s) 516
BsuRI GGCC 9 cut(s) 219, 266, 295, 831, 843, 852, 858, 879, 894
BtgZI GCGATG 1 cut(s) 738
BtsCI GGATG 4 cut(s) 15, 178, 494, 695
BtsIMutI CAGTG 5 cut(s) 465, 600, 642, 1272, 1303
Cac8I GCNNGC 2 cut(s) 400, 904
CfoI GCGC 1 cut(s) 765
Cfr13I GGNCC 7 cut(s) 217, 218, 294, 829, 856, 892, 954
CsiI ACCWGGT 1 cut(s) 986
Csp6I GTAC 1 cut(s) 1323
CspCI CAANNNNNGTGG 2 cut(s) 961, 996
CviAII CATG 4 cut(s) 349, 490, 768, 950
CviQI GTAC 1 cut(s) 1323
DdeI CTNAG 8 cut(s) 195, 203, 290, 574, 812, 927, 1146, 1365
DriI GACNNNNNGTC 1 cut(s) 988
EaeI YGGCCR 2 cut(s) 841, 850
Eam1104I CTCTTC 3 cut(s) 97, 443, 618
Eam1105I GACNNNNNGTC 1 cut(s) 988
EarI CTCTTC 3 cut(s) 97, 443, 618
EciI GGCGGA 1 cut(s) 577
Ecl136II GAGCTC 1 cut(s) 1150
Eco130I CCWWGG 1 cut(s) 1170
Eco147I AGGCCT 1 cut(s) 879
Eco24I GRGCYC 2 cut(s) 221, 1152
Eco31I GGTCTC 1 cut(s) 996
Eco47I GGWCC 1 cut(s) 954
Eco53kI GAGCTC 1 cut(s) 1150
Eco57I CTGAAG 1 cut(s) 45
Eco81I CCTNAGG 1 cut(s) 290
Eco88I CYCGRG 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 1150
EcoNI CCTNNNNNAGG 1 cut(s) 824
EcoRII CCWGG 4 cut(s) 784, 843, 986, 1349
EcoT14I CCWWGG 1 cut(s) 1170
EcoT38I GRGCYC 2 cut(s) 221, 1152
ErhI CCWWGG 1 cut(s) 1170
Esp3I CGTCTC 1 cut(s) 1057
FaeI CATG 4 cut(s) 352, 493, 771, 953
FaqI GGGAC 3 cut(s) 308, 967, 1307
FatI CATG 4 cut(s) 348, 489, 767, 949
FauI CCCGC 1 cut(s) 1105
FauNDI CATATG 1 cut(s) 556
Fnu4HI GCNGC 4 cut(s) 710, 832, 900, 1143
FokI GGATG 4 cut(s) 2, 185, 481, 682
FriOI GRGCYC 2 cut(s) 221, 1152
Fsp4HI GCNGC 4 cut(s) 710, 832, 900, 1143
FspBI CTAG 6 cut(s) 395, 399, 903, 1139, 1259, 1284
GlaI GCGC 1 cut(s) 764
GluI GCNGC 4 cut(s) 710, 832, 900, 1143
GsuI CTGGAG 2 cut(s) 129, 1107
HaeII RGCGCY 1 cut(s) 766
HaeIII GGCC 9 cut(s) 219, 266, 295, 831, 843, 852, 858, 879, 894
HapII CCGG 2 cut(s) 853, 1202
HhaI GCGC 1 cut(s) 765
Hin1II CATG 4 cut(s) 352, 493, 771, 953
Hin6I GCGC 1 cut(s) 763
HinP1I GCGC 1 cut(s) 763
HindIII AAGCTT 2 cut(s) 48, 1187
HinfI GANTC 5 cut(s) 58, 111, 605, 674, 1220
HpaII CCGG 2 cut(s) 853, 1202
HphI GGTGA 6 cut(s) 131, 600, 618, 643, 800, 1125
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 6 cut(s) 55, 414, 429, 577, 736, 1219
Hpy188III TCNNGA 5 cut(s) 329, 509, 929, 935, 965
Hpy8I GTNNAC 1 cut(s) 517
HpyAV CCTTC 7 cut(s) 84, 146, 312, 534, 561, 575, 931
HpyCH4III ACNGT 4 cut(s) 595, 1298, 1322, 1327
HpyCH4V TGCA 8 cut(s) 161, 176, 278, 869, 1067, 1157, 1184, 1331
HpyF10VI GCNNNNNNNGC 3 cut(s) 47, 840, 849
HpyF3I CTNAG 8 cut(s) 195, 203, 290, 574, 812, 927, 1146, 1365
Hsp92II CATG 4 cut(s) 352, 493, 771, 953
HspAI GCGC 1 cut(s) 763
LguI GCTCTTC 1 cut(s) 97
LmnI GCTCC 2 cut(s) 911, 1155
Lsp1109I GCAGC 2 cut(s) 721, 886
LweI GCATC 5 cut(s) 148, 163, 1018, 1223, 1252
MabI ACCWGGT 1 cut(s) 986
MaeI CTAG 6 cut(s) 395, 399, 903, 1139, 1259, 1284
MaeIII GTNAC 1 cut(s) 649
MflI RGATCY 2 cut(s) 424, 577
MhlI GDGCHC 2 cut(s) 221, 1152
MlsI TGGCCA 1 cut(s) 843
MluCI AATT 5 cut(s) 78, 530, 700, 1045, 1095
MluNI TGGCCA 1 cut(s) 843
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 4 cut(s) 43, 150, 452, 466
Mox20I TGGCCA 1 cut(s) 843
MroXI GAANNNNTTC 1 cut(s) 747
MscI TGGCCA 1 cut(s) 843
MseI TTAA 2 cut(s) 354, 714
Msp20I TGGCCA 1 cut(s) 843
MspI CCGG 2 cut(s) 853, 1202
MspR9I CCNGG 6 cut(s) 786, 845, 854, 988, 1202, 1351
MvaI CCWGG 4 cut(s) 786, 845, 988, 1351
MvnI CGCG 1 cut(s) 834
MwoI GCNNNNNNNGC 3 cut(s) 47, 840, 849
NciI CCSGG 2 cut(s) 854, 1202
NdeI CATATG 1 cut(s) 556
NheI GCTAGC 2 cut(s) 398, 902
NlaIII CATG 4 cut(s) 352, 493, 771, 953
NlaIV GGNNCC 4 cut(s) 219, 857, 893, 955
NmeAIII GCCGAG 1 cut(s) 920
NmuCI GTSAC 1 cut(s) 649
NspI RCATGY 2 cut(s) 352, 493
PceI AGGCCT 1 cut(s) 879
PciI ACATGT 1 cut(s) 489
PciSI GCTCTTC 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 747
PfeI GAWTC 4 cut(s) 58, 605, 674, 1220
PkrI GCNGC 4 cut(s) 711, 833, 901, 1144
Ple19I CGATCG 1 cut(s) 838
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PscI ACATGT 1 cut(s) 489
Psp124BI GAGCTC 1 cut(s) 1152
Psp6I CCWGG 4 cut(s) 784, 843, 986, 1349
PspGI CCWGG 4 cut(s) 784, 843, 986, 1349
PspN4I GGNNCC 4 cut(s) 219, 857, 893, 955
PspOMI GGGCCC 1 cut(s) 217
PspPI GGNCC 7 cut(s) 217, 218, 294, 829, 856, 892, 954
PsuI RGATCY 2 cut(s) 424, 577
PvuI CGATCG 1 cut(s) 838
RsaI GTAC 1 cut(s) 1324
RsaNI GTAC 1 cut(s) 1323
SacI GAGCTC 1 cut(s) 1152
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 2 cut(s) 354, 714
SatI GCNGC 4 cut(s) 710, 832, 900, 1143
Sau96I GGNCC 7 cut(s) 217, 218, 294, 829, 856, 892, 954
ScaI AGTACT 1 cut(s) 1324
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 6 cut(s) 786, 845, 854, 988, 1202, 1351
SduI GDGCHC 2 cut(s) 221, 1152
SexAI ACCWGGT 1 cut(s) 986
SfaNI GCATC 5 cut(s) 148, 163, 1018, 1223, 1252
SfiI GGCCNNNNNGGCC 1 cut(s) 849
SinI GGWCC 1 cut(s) 954
SmlI CTYRAG 1 cut(s) 45
SmoI CTYRAG 1 cut(s) 45
Sse9I AATT 5 cut(s) 78, 530, 700, 1045, 1095
SseBI AGGCCT 1 cut(s) 879
SsiI CCGC 4 cut(s) 588, 832, 1112, 1142
SspMI CTAG 6 cut(s) 395, 399, 903, 1139, 1259, 1284
SstI GAGCTC 1 cut(s) 1152
StuI AGGCCT 1 cut(s) 879
StyD4I CCNGG 6 cut(s) 784, 843, 852, 986, 1200, 1349
StyI CCWWGG 1 cut(s) 1170
TaaI ACNGT 4 cut(s) 595, 1298, 1322, 1327
TaqI TCGA 3 cut(s) 249, 1252, 1269
TasI AATT 5 cut(s) 78, 530, 700, 1045, 1095
TatI WGTACW 1 cut(s) 1322
TauI GCSGC 2 cut(s) 834, 1145
TfiI GAWTC 4 cut(s) 58, 605, 674, 1220
Tru1I TTAA 2 cut(s) 354, 714
Tru9I TTAA 2 cut(s) 354, 714
TscAI CASTG 5 cut(s) 472, 607, 649, 1279, 1303
TseFI GTSAC 1 cut(s) 649
TseI GCWGC 2 cut(s) 709, 899
Tsp45I GTSAC 1 cut(s) 649
TspDTI ATGAA 1 cut(s) 543
TspGWI ACGGA 1 cut(s) 1039
TspRI CASTG 5 cut(s) 472, 607, 649, 1279, 1303
VpaK11BI GGWCC 1 cut(s) 954
XagI CCTNNNNNAGG 1 cut(s) 824
XapI RAATTY 1 cut(s) 1045
XceI RCATGY 2 cut(s) 352, 493
XmnI GAANNNNTTC 1 cut(s) 747
XspI CTAG 6 cut(s) 395, 399, 903, 1139, 1259, 1284
ZrmI AGTACT 1 cut(s) 1324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.