Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 42 - 161 | 2.9e-23 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 335 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 155 |
| AccIII | TCCGGA | 1 cut(s) | 106 |
| AciI | CCGC | 3 cut(s) | 134, 203, 493 |
| AclWI | GGATC | 4 cut(s) | 140, 217, 238, 434 |
| AcsI | RAATTY | 1 cut(s) | 346 |
| AcuI | CTGAAG | 1 cut(s) | 267 |
| AfaI | GTAC | 1 cut(s) | 412 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 155 |
| AflII | CTTAAG | 1 cut(s) | 586 |
| AgsI | TTSAA | 5 cut(s) | 239, 269, 287, 314, 421 |
| AjnI | CCWGG | 1 cut(s) | 137 |
| AluBI | AGCT | 4 cut(s) | 245, 251, 467, 591 |
| AluI | AGCT | 4 cut(s) | 245, 251, 467, 591 |
| Alw21I | GWGCWC | 1 cut(s) | 552 |
| Alw26I | GTCTC | 2 cut(s) | 16, 509 |
| AlwI | GGATC | 4 cut(s) | 140, 217, 238, 434 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 295, 369 |
| Ama87I | CYCGRG | 1 cut(s) | 447 |
| Aor13HI | TCCGGA | 1 cut(s) | 106 |
| AoxI | GGCC | 3 cut(s) | 135, 516, 524 |
| ApeKI | GCWGC | 2 cut(s) | 464, 476 |
| ApoI | RAATTY | 1 cut(s) | 346 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 441 |
| AspS9I | GGNCC | 2 cut(s) | 64, 516 |
| AsuC2I | CCSGG | 1 cut(s) | 62 |
| AsuHPI | GGTGA | 1 cut(s) | 127 |
| AsuII | TTCGAA | 1 cut(s) | 307 |
| AvaI | CYCGRG | 1 cut(s) | 447 |
| AvaII | GGWCC | 1 cut(s) | 64 |
| BbsI | GAAGAC | 1 cut(s) | 557 |
| Bbv12I | GWGCWC | 1 cut(s) | 552 |
| BbvI | GCAGC | 2 cut(s) | 476, 488 |
| BccI | CCATC | 4 cut(s) | 157, 396, 507, 554 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 287, 321 |
| BciT130I | CCWGG | 1 cut(s) | 139 |
| BclI | TGATCA | 1 cut(s) | 181 |
| BcnI | CCSGG | 1 cut(s) | 62 |
| BcoDI | GTCTC | 2 cut(s) | 16, 509 |
| BfaI | CTAG | 2 cut(s) | 252, 592 |
| BfrI | CTTAAG | 1 cut(s) | 586 |
| BisI | GCNGC | 3 cut(s) | 135, 465, 477 |
| BlsI | GCNGC | 3 cut(s) | 136, 466, 478 |
| Bme1390I | CCNGG | 2 cut(s) | 62, 139 |
| Bme18I | GGWCC | 1 cut(s) | 64 |
| BmeT110I | CYCGRG | 1 cut(s) | 447 |
| BmgT120I | GGNCC | 2 cut(s) | 64, 516 |
| BmiI | GGNNCC | 1 cut(s) | 96 |
| BmrFI | CCNGG | 2 cut(s) | 62, 139 |
| BmsI | GCATC | 1 cut(s) | 121 |
| BpiI | GAAGAC | 1 cut(s) | 557 |
| BpmI | CTGGAG | 2 cut(s) | 493, 561 |
| Bpu10I | CCTNAGC | 1 cut(s) | 551 |
| Bpu14I | TTCGAA | 1 cut(s) | 307 |
| BpuMI | CCSGG | 1 cut(s) | 62 |
| BsaI | GGTCTC | 1 cut(s) | 509 |
| BsaJI | CCNNGG | 2 cut(s) | 60, 138 |
| BsaWI | WCCGGW | 1 cut(s) | 106 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 155 |
| Bse1I | ACTGG | 3 cut(s) | 282, 374, 578 |
| BseAI | TCCGGA | 1 cut(s) | 106 |
| BseBI | CCWGG | 1 cut(s) | 139 |
| BseDI | CCNNGG | 2 cut(s) | 60, 138 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 155 |
| BseMII | CTCAG | 1 cut(s) | 565 |
| BseNI | ACTGG | 3 cut(s) | 282, 374, 578 |
| BseXI | GCAGC | 2 cut(s) | 476, 488 |
| Bsh1285I | CGRYCG | 1 cut(s) | 497 |
| BshFI | GGCC | 3 cut(s) | 137, 518, 526 |
| BsiEI | CGRYCG | 1 cut(s) | 497 |
| BsiHKAI | GWGCWC | 1 cut(s) | 552 |
| BsiHKCI | CYCGRG | 1 cut(s) | 447 |
| BsiSI | CCGG | 2 cut(s) | 62, 107 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 155 |
| BsmAI | GTCTC | 2 cut(s) | 16, 509 |
| BsnI | GGCC | 3 cut(s) | 137, 518, 526 |
| Bso31I | GGTCTC | 1 cut(s) | 509 |
| BsoBI | CYCGRG | 1 cut(s) | 447 |
| Bsp119I | TTCGAA | 1 cut(s) | 307 |
| Bsp1286I | GDGCHC | 1 cut(s) | 552 |
| Bsp13I | TCCGGA | 1 cut(s) | 106 |
| Bsp143I | GATC | 6 cut(s) | 145, 181, 209, 230, 340, 426 |
| BspACI | CCGC | 3 cut(s) | 134, 203, 493 |
| BspANI | GGCC | 3 cut(s) | 137, 518, 526 |
| BspCNI | CTCAG | 1 cut(s) | 564 |
| BspEI | TCCGGA | 1 cut(s) | 106 |
| BspLI | GGNNCC | 1 cut(s) | 96 |
| BspPI | GGATC | 4 cut(s) | 140, 217, 238, 434 |
| BspT104I | TTCGAA | 1 cut(s) | 307 |
| BspTI | CTTAAG | 1 cut(s) | 586 |
| BspTNI | GGTCTC | 1 cut(s) | 509 |
| BsrI | ACTGG | 3 cut(s) | 282, 374, 578 |
| BssECI | CCNNGG | 2 cut(s) | 60, 138 |
| BssMI | GATC | 6 cut(s) | 145, 181, 209, 230, 340, 426 |
| Bst2UI | CCWGG | 1 cut(s) | 139 |
| Bst4CI | ACNGT | 2 cut(s) | 121, 128 |
| Bst6I | CTCTTC | 3 cut(s) | 76, 387, 447 |
| BstAFI | CTTAAG | 1 cut(s) | 586 |
| BstBI | TTCGAA | 1 cut(s) | 307 |
| BstDEI | CTNAG | 1 cut(s) | 551 |
| BstKTI | GATC | 6 cut(s) | 148, 184, 212, 233, 343, 429 |
| BstMAI | GTCTC | 2 cut(s) | 16, 509 |
| BstMBI | GATC | 6 cut(s) | 145, 181, 209, 230, 340, 426 |
| BstMCI | CGRYCG | 1 cut(s) | 497 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 473, 490 |
| BstNI | CCWGG | 1 cut(s) | 139 |
| BstSCI | CCNGG | 2 cut(s) | 60, 137 |
| BstV1I | GCAGC | 2 cut(s) | 476, 488 |
| BstV2I | GAAGAC | 1 cut(s) | 557 |
| BstX2I | RGATCY | 1 cut(s) | 426 |
| BstYI | RGATCY | 1 cut(s) | 426 |
| BsuRI | GGCC | 3 cut(s) | 137, 518, 526 |
| CaiI | CAGNNNCTG | 2 cut(s) | 295, 369 |
| Cfr13I | GGNCC | 2 cut(s) | 64, 516 |
| Csp6I | GTAC | 1 cut(s) | 411 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 519, 554 |
| CviAII | CATG | 1 cut(s) | 222 |
| CviJI | RGCY | 9 cut(s) | 137, 245, 251, 467, 479, 518, 526, 536, 591 |
| CviKI_1 | RGCY | 9 cut(s) | 137, 245, 251, 467, 479, 518, 526, 536, 591 |
| CviQI | GTAC | 1 cut(s) | 411 |
| DdeI | CTNAG | 1 cut(s) | 551 |
| DpnI | GATC | 6 cut(s) | 147, 183, 211, 232, 342, 428 |
| DpnII | GATC | 6 cut(s) | 145, 181, 209, 230, 340, 426 |
| Eam1104I | CTCTTC | 3 cut(s) | 76, 387, 447 |
| EarI | CTCTTC | 3 cut(s) | 76, 387, 447 |
| Eco31I | GGTCTC | 1 cut(s) | 509 |
| Eco47I | GGWCC | 1 cut(s) | 64 |
| Eco57I | CTGAAG | 1 cut(s) | 267 |
| Eco88I | CYCGRG | 1 cut(s) | 447 |
| EcoRI | GAATTC | 1 cut(s) | 346 |
| EcoRII | CCWGG | 1 cut(s) | 137 |
| FaeI | CATG | 1 cut(s) | 225 |
| FaiI | YATR | 7 cut(s) | 186, 194, 223, 335, 461, 471, 545 |
| FatI | CATG | 1 cut(s) | 221 |
| FauI | CCCGC | 1 cut(s) | 196 |
| FbaI | TGATCA | 1 cut(s) | 181 |
| Fnu4HI | GCNGC | 3 cut(s) | 135, 465, 477 |
| Fsp4HI | GCNGC | 3 cut(s) | 135, 465, 477 |
| FspBI | CTAG | 2 cut(s) | 252, 592 |
| GluI | GCNGC | 3 cut(s) | 135, 465, 477 |
| GsuI | CTGGAG | 2 cut(s) | 493, 561 |
| HaeIII | GGCC | 3 cut(s) | 137, 518, 526 |
| HapII | CCGG | 2 cut(s) | 62, 107 |
| Hin1II | CATG | 1 cut(s) | 225 |
| HincII | GTYRAC | 1 cut(s) | 124 |
| HindII | GTYRAC | 1 cut(s) | 124 |
| HinfI | GANTC | 5 cut(s) | 175, 292, 314, 320, 442 |
| HpaI | GTTAAC | 1 cut(s) | 124 |
| HpaII | CCGG | 2 cut(s) | 62, 107 |
| HphI | GGTGA | 1 cut(s) | 127 |
| Hpy166II | GTNNAC | 1 cut(s) | 124 |
| Hpy188I | TCNGA | 4 cut(s) | 76, 319, 345, 426 |
| Hpy188III | TCNNGA | 5 cut(s) | 8, 107, 179, 510, 553 |
| Hpy8I | GTNNAC | 1 cut(s) | 124 |
| HpyAV | CCTTC | 1 cut(s) | 424 |
| HpyCH4III | ACNGT | 2 cut(s) | 121, 128 |
| HpyCH4V | TGCA | 3 cut(s) | 29, 257, 298 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 473, 490 |
| HpyF3I | CTNAG | 1 cut(s) | 551 |
| Hsp92II | CATG | 1 cut(s) | 225 |
| Kpn2I | TCCGGA | 1 cut(s) | 106 |
| Ksp22I | TGATCA | 1 cut(s) | 181 |
| KspAI | GTTAAC | 1 cut(s) | 124 |
| Kzo9I | GATC | 6 cut(s) | 145, 181, 209, 230, 340, 426 |
| Lsp1109I | GCAGC | 2 cut(s) | 476, 488 |
| LweI | GCATC | 1 cut(s) | 121 |
| MaeI | CTAG | 2 cut(s) | 252, 592 |
| MaeIII | GTNAC | 2 cut(s) | 115, 224 |
| MalI | GATC | 6 cut(s) | 147, 183, 211, 232, 342, 428 |
| MboI | GATC | 6 cut(s) | 145, 181, 209, 230, 340, 426 |
| MboII | GAAGA | 6 cut(s) | 63, 404, 409, 421, 464, 557 |
| MfeI | CAATTG | 1 cut(s) | 282 |
| MflI | RGATCY | 1 cut(s) | 426 |
| MhlI | GDGCHC | 1 cut(s) | 552 |
| MluCI | AATT | 4 cut(s) | 258, 282, 309, 346 |
| MnlI | CCTC | 8 cut(s) | 77, 108, 114, 152, 322, 388, 490, 585 |
| MroI | TCCGGA | 1 cut(s) | 106 |
| MroXI | GAANNNNTTC | 1 cut(s) | 441 |
| MseI | TTAA | 3 cut(s) | 41, 123, 587 |
| MspCI | CTTAAG | 1 cut(s) | 586 |
| MspI | CCGG | 2 cut(s) | 62, 107 |
| MspR9I | CCNGG | 2 cut(s) | 62, 139 |
| MunI | CAATTG | 1 cut(s) | 282 |
| MvaI | CCWGG | 1 cut(s) | 139 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 473, 490 |
| NciI | CCSGG | 1 cut(s) | 62 |
| NdeII | GATC | 6 cut(s) | 145, 181, 209, 230, 340, 426 |
| NlaIII | CATG | 1 cut(s) | 225 |
| NlaIV | GGNNCC | 1 cut(s) | 96 |
| NmuCI | GTSAC | 2 cut(s) | 115, 224 |
| NspV | TTCGAA | 1 cut(s) | 307 |
| PdmI | GAANNNNTTC | 1 cut(s) | 441 |
| PfeI | GAWTC | 5 cut(s) | 175, 292, 314, 320, 442 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 155 |
| PkrI | GCNGC | 3 cut(s) | 136, 466, 478 |
| PsiI | TTATAA | 1 cut(s) | 335 |
| Psp6I | CCWGG | 1 cut(s) | 137 |
| PspGI | CCWGG | 1 cut(s) | 137 |
| PspN4I | GGNNCC | 1 cut(s) | 96 |
| PspPI | GGNCC | 2 cut(s) | 64, 516 |
| PstNI | CAGNNNCTG | 2 cut(s) | 295, 369 |
| PsuI | RGATCY | 1 cut(s) | 426 |
| RsaI | GTAC | 1 cut(s) | 412 |
| RsaNI | GTAC | 1 cut(s) | 411 |
| SaqAI | TTAA | 3 cut(s) | 41, 123, 587 |
| SatI | GCNGC | 3 cut(s) | 135, 465, 477 |
| Sau3AI | GATC | 6 cut(s) | 145, 181, 209, 230, 340, 426 |
| Sau96I | GGNCC | 2 cut(s) | 64, 516 |
| ScrFI | CCNGG | 2 cut(s) | 62, 139 |
| SduI | GDGCHC | 1 cut(s) | 552 |
| SfaNI | GCATC | 1 cut(s) | 121 |
| SfuI | TTCGAA | 1 cut(s) | 307 |
| SinI | GGWCC | 1 cut(s) | 64 |
| SmlI | CTYRAG | 1 cut(s) | 586 |
| SmoI | CTYRAG | 1 cut(s) | 586 |
| Sse9I | AATT | 4 cut(s) | 258, 282, 309, 346 |
| SsiI | CCGC | 3 cut(s) | 134, 203, 493 |
| SspMI | CTAG | 2 cut(s) | 252, 592 |
| StyD4I | CCNGG | 2 cut(s) | 60, 137 |
| TaaI | ACNGT | 2 cut(s) | 121, 128 |
| TaqI | TCGA | 5 cut(s) | 144, 212, 273, 307, 390 |
| TasI | AATT | 4 cut(s) | 258, 282, 309, 346 |
| TauI | GCSGC | 1 cut(s) | 137 |
| TfiI | GAWTC | 5 cut(s) | 175, 292, 314, 320, 442 |
| Tru1I | TTAA | 3 cut(s) | 41, 123, 587 |
| Tru9I | TTAA | 3 cut(s) | 41, 123, 587 |
| TseFI | GTSAC | 2 cut(s) | 115, 224 |
| TseI | GCWGC | 2 cut(s) | 464, 476 |
| Tsp45I | GTSAC | 2 cut(s) | 115, 224 |
| TspDTI | ATGAA | 1 cut(s) | 70 |
| TspGWI | ACGGA | 1 cut(s) | 243 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 155 |
| Vha464I | CTTAAG | 1 cut(s) | 586 |
| VpaK11BI | GGWCC | 1 cut(s) | 64 |
| XapI | RAATTY | 1 cut(s) | 346 |
| XmnI | GAANNNNTTC | 1 cut(s) | 441 |
| XspI | CTAG | 2 cut(s) | 252, 592 |