ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 17 - 89 | 4.9e-13 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 153 |
| AclWI | GGATC | 1 cut(s) | 362 |
| AcsI | RAATTY | 1 cut(s) | 66 |
| AdeI | CACNNNGTG | 1 cut(s) | 25 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 153 |
| AgsI | TTSAA | 1 cut(s) | 85 |
| AjnI | CCWGG | 1 cut(s) | 263 |
| AluBI | AGCT | 3 cut(s) | 323, 354, 374 |
| AluI | AGCT | 3 cut(s) | 323, 354, 374 |
| AlwI | GGATC | 1 cut(s) | 362 |
| ApeKI | GCWGC | 1 cut(s) | 260 |
| ApoI | RAATTY | 1 cut(s) | 66 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 161, 391 |
| AspS9I | GGNCC | 1 cut(s) | 252 |
| AsuHPI | GGTGA | 1 cut(s) | 67 |
| AvaII | GGWCC | 1 cut(s) | 252 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 25, 57, 312, 344 |
| BbvI | GCAGC | 1 cut(s) | 272 |
| BciT130I | CCWGG | 1 cut(s) | 265 |
| BfaI | CTAG | 1 cut(s) | 317 |
| BfmI | CTRYAG | 1 cut(s) | 258 |
| BisI | GCNGC | 1 cut(s) | 261 |
| BlsI | GCNGC | 1 cut(s) | 262 |
| Bme1390I | CCNGG | 1 cut(s) | 265 |
| Bme18I | GGWCC | 1 cut(s) | 252 |
| BmgT120I | GGNCC | 1 cut(s) | 252 |
| BmrFI | CCNGG | 1 cut(s) | 265 |
| BpmI | CTGGAG | 2 cut(s) | 353, 367 |
| BsaJI | CCNNGG | 1 cut(s) | 248 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 153 |
| Bse1I | ACTGG | 2 cut(s) | 158, 336 |
| Bse3DI | GCAATG | 1 cut(s) | 140 |
| BseBI | CCWGG | 1 cut(s) | 265 |
| BseDI | CCNNGG | 1 cut(s) | 248 |
| BseGI | GGATG | 1 cut(s) | 177 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 153 |
| BseMI | GCAATG | 1 cut(s) | 140 |
| BseNI | ACTGG | 2 cut(s) | 158, 336 |
| BseXI | GCAGC | 1 cut(s) | 272 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 153 |
| BsmI | GAATGC | 1 cut(s) | 96 |
| Bsp143I | GATC | 2 cut(s) | 174, 367 |
| BspMAI | CTGCAG | 1 cut(s) | 262 |
| BspPI | GGATC | 1 cut(s) | 362 |
| BsrDI | GCAATG | 1 cut(s) | 140 |
| BsrI | ACTGG | 2 cut(s) | 158, 336 |
| BssECI | CCNNGG | 1 cut(s) | 248 |
| BssMI | GATC | 2 cut(s) | 174, 367 |
| BssT1I | CCWWGG | 1 cut(s) | 248 |
| Bst2UI | CCWGG | 1 cut(s) | 265 |
| Bst6I | CTCTTC | 1 cut(s) | 46 |
| BstF5I | GGATG | 1 cut(s) | 177 |
| BstKTI | GATC | 2 cut(s) | 177, 370 |
| BstMBI | GATC | 2 cut(s) | 174, 367 |
| BstNI | CCWGG | 1 cut(s) | 265 |
| BstSCI | CCNGG | 1 cut(s) | 263 |
| BstSFI | CTRYAG | 1 cut(s) | 258 |
| BstV1I | GCAGC | 1 cut(s) | 272 |
| BtsCI | GGATG | 1 cut(s) | 177 |
| BtsI | GCAGTG | 1 cut(s) | 255 |
| BtsIMutI | CAGTG | 1 cut(s) | 255 |
| Cfr13I | GGNCC | 1 cut(s) | 252 |
| CviAII | CATG | 1 cut(s) | 22 |
| CviJI | RGCY | 4 cut(s) | 263, 323, 354, 374 |
| CviKI_1 | RGCY | 4 cut(s) | 263, 323, 354, 374 |
| DpnI | GATC | 2 cut(s) | 176, 369 |
| DpnII | GATC | 2 cut(s) | 174, 367 |
| DraIII | CACNNNGTG | 1 cut(s) | 25 |
| Eam1104I | CTCTTC | 1 cut(s) | 46 |
| EarI | CTCTTC | 1 cut(s) | 46 |
| Eco130I | CCWWGG | 1 cut(s) | 248 |
| Eco47I | GGWCC | 1 cut(s) | 252 |
| EcoRII | CCWGG | 1 cut(s) | 263 |
| EcoT14I | CCWWGG | 1 cut(s) | 248 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 142 |
| ErhI | CCWWGG | 1 cut(s) | 248 |
| FaeI | CATG | 1 cut(s) | 25 |
| FaiI | YATR | 5 cut(s) | 9, 23, 303, 391, 422 |
| FatI | CATG | 1 cut(s) | 21 |
| Fnu4HI | GCNGC | 1 cut(s) | 261 |
| FokI | GGATG | 1 cut(s) | 164 |
| Fsp4HI | GCNGC | 1 cut(s) | 261 |
| FspBI | CTAG | 1 cut(s) | 317 |
| GluI | GCNGC | 1 cut(s) | 261 |
| GsuI | CTGGAG | 2 cut(s) | 353, 367 |
| Hin1II | CATG | 1 cut(s) | 25 |
| HindIII | AAGCTT | 1 cut(s) | 321 |
| HphI | GGTGA | 1 cut(s) | 67 |
| Hpy166II | GTNNAC | 2 cut(s) | 35, 58 |
| Hpy188I | TCNGA | 1 cut(s) | 167 |
| Hpy188III | TCNNGA | 3 cut(s) | 293, 384, 414 |
| Hpy8I | GTNNAC | 2 cut(s) | 35, 58 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 96, 140, 260 |
| Hsp92II | CATG | 1 cut(s) | 25 |
| Kzo9I | GATC | 2 cut(s) | 174, 367 |
| LmnI | GCTCC | 1 cut(s) | 386 |
| Lsp1109I | GCAGC | 1 cut(s) | 272 |
| MaeI | CTAG | 1 cut(s) | 317 |
| MaeIII | GTNAC | 1 cut(s) | 327 |
| MalI | GATC | 2 cut(s) | 176, 369 |
| MboI | GATC | 2 cut(s) | 174, 367 |
| MboII | GAAGA | 3 cut(s) | 33, 36, 180 |
| MluCI | AATT | 3 cut(s) | 66, 91, 306 |
| MnlI | CCTC | 3 cut(s) | 49, 198, 339 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 142 |
| MroXI | GAANNNNTTC | 2 cut(s) | 161, 391 |
| MseI | TTAA | 1 cut(s) | 339 |
| MslI | CAYNNNNRTG | 1 cut(s) | 425 |
| MspR9I | CCNGG | 1 cut(s) | 265 |
| Mva1269I | GAATGC | 1 cut(s) | 96 |
| MvaI | CCWGG | 1 cut(s) | 265 |
| NdeII | GATC | 2 cut(s) | 174, 367 |
| NlaIII | CATG | 1 cut(s) | 25 |
| NsiI | ATGCAT | 2 cut(s) | 6, 142 |
| PctI | GAATGC | 1 cut(s) | 96 |
| PdmI | GAANNNNTTC | 2 cut(s) | 161, 391 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 153 |
| PkrI | GCNGC | 1 cut(s) | 262 |
| Psp6I | CCWGG | 1 cut(s) | 263 |
| PspGI | CCWGG | 1 cut(s) | 263 |
| PspPI | GGNCC | 1 cut(s) | 252 |
| PstI | CTGCAG | 1 cut(s) | 262 |
| RseI | CAYNNNNRTG | 1 cut(s) | 425 |
| SaqAI | TTAA | 1 cut(s) | 339 |
| SatI | GCNGC | 1 cut(s) | 261 |
| Sau3AI | GATC | 2 cut(s) | 174, 367 |
| Sau96I | GGNCC | 1 cut(s) | 252 |
| ScrFI | CCNGG | 1 cut(s) | 265 |
| SetI | ASST | 6 cut(s) | 57, 325, 350, 356, 376, 427 |
| SfcI | CTRYAG | 1 cut(s) | 258 |
| SinI | GGWCC | 1 cut(s) | 252 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 425 |
| Sse9I | AATT | 3 cut(s) | 66, 91, 306 |
| SspMI | CTAG | 1 cut(s) | 317 |
| StyD4I | CCNGG | 1 cut(s) | 263 |
| StyI | CCWWGG | 1 cut(s) | 248 |
| TaqI | TCGA | 1 cut(s) | 362 |
| TasI | AATT | 3 cut(s) | 66, 91, 306 |
| Tru1I | TTAA | 1 cut(s) | 339 |
| Tru9I | TTAA | 1 cut(s) | 339 |
| TscAI | CASTG | 1 cut(s) | 262 |
| TseI | GCWGC | 1 cut(s) | 260 |
| TspDTI | ATGAA | 1 cut(s) | 388 |
| TspRI | CASTG | 1 cut(s) | 262 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 153 |
| VpaK11BI | GGWCC | 1 cut(s) | 252 |
| XapI | RAATTY | 1 cut(s) | 66 |
| XmnI | GAANNNNTTC | 2 cut(s) | 161, 391 |
| XspI | CTAG | 1 cut(s) | 317 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 142 |