FvH4_6g11620

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000093
Physical Location & Seq
Forward (+)
6960251 .. 6965970
5720 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11620.t1

Sequence Viewer

Length: 1602 bp
ATGATGAAAGACTACAAAACAATCAAAGAGGAGTTTCTCACCAAAGTTGCTTTTCTTCTGTGGGAGATTTGGAAAGCTAGGAATGCTTTTGTCTATGAAGCTGCTACAATTGACCCAAGCTTAATCGCCAGGAAAGCTAATTTGGCTGCAGCTGAATTCATCACCTGCAAAAACCACAAGGTCATTTCAAATTCAATGCCGGTATCTCATTTGCACTCTCGGCAGTCTCAGAGTAATCACCCAAACCATGGTAGGACTTCTATCTCCCTTTCCCCCACTGTGAGTAATGTGACAGAAATTTGGAGCCCCCCTCCTCCTGGTCATTTTAAAATAAATTGTGATGCAGCATGGATAGAGAGTTCAAAGCTTACCGGTATCAGTGCTTTAGCGCGTGATTGTCATGGTACTCTCTTTGATGGAGCTACCTTGTTGTGTCGAGCGGGATCAGTGTTAGAGGCGGAAGCAGCGGCTGCGGTGGTGGCTATTGAGGTGGCCAAACGTCTCCCTCCCTCTCCGATCATCCTCGAGTCAGATTCAAAAGCCTTAGTGGACCAGATAAACAATTCAAAGTTTCCATGTAATTGGAAAATTGCTCCTGTTGTGACTATGATTCAGAATTCAATTACCTCGAACCCGCGTCTAGCTTGGTTTTGGATTTCAAGAAAAGCGAACTCTGCAGCCGATTTGGTTGCCTCGCTAGTAGTGAGGAAGAAGTGCCCGGAGGTCTGGATTGATCGCCCGCCTTCTTCCCTTGTGTTTGTTCTTTCTCGTGATGGTGTCCTTGTCTGGCCGTTTCAGTTGGCTTTGACTAGGTTTGTTATTTGCTTGGGCTTTGGTCTTGGCCTTCTCCTTGCTGTTGTCATCTGCCGCCTCTACTCATCTGAGCCGAGGAGCCTTAGGGAGGCGGTTACTCCGATGACTGAGCGGCCTCTAGGGATTTGGGAGACAGGCGGTGGAGTGGCACCGAGCAGTTTGAGGACTCCGAGTACCGGAATCGAGCATGCACATAGTGCGTTTGGGATGATGACTCCCGCCAGAGAGAATACGCCGCCGGTCAGAGGTCTTAGCCGGAGAAGGGGACAGAGATCGAACAGTGTGTTGCCTTCTTGGTACCCTAAAACCCCTCTGCGTGAAATAACTGCGATTACTAGGCTCTCTTTATGTTCTGTTGATGGAGGCATCATTGCCTTCATACCCCTCGCGGACGGCCTCTGCTACAAGAAGAATAAAAGAAGGAAACTCACCACTAATGGTTGGATGAGGCAATGGAGTCACCTGGGCACAAATCACCCAGCTCATCTCCCTCAACGCTCCAAGCTCACCAAAGTCCTCAAACCCGGCGTCACCAATGATGAAGGCCAAGTCAAAATTTCAGTTTCTGGAGCATACAAATCAAAAGCATGGAAAGAGAAGACCAAATCCTCACCTGCTCTGTGGGGATTTAGAAAAAAAAGTCGTGTGAAGAATGAGACAGTTAGCTGGAAAGAGAAGGAACGAGAAGAGGAAAAGAGCTACTGGGCCTCCAAAACCAAGAAATGTGATTCAGTGCACCCTCCAAGACATGGGTGTCCAGATCAAATACCTGAAGTTTGGTTTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

534

Amino Acids

59.3

Weight (kDa)

9.88

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 112 - 232 4.7e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 173, 1435
AasI GACNNNNNNGTC 1 cut(s) 1566
Acc36I ACCTGC 2 cut(s) 173, 1435
Acc65I GGTACC 1 cut(s) 1110
AccB1I GGYRCC 2 cut(s) 961, 1110
AccB7I CCANNNNNTGG 2 cut(s) 248, 1562
AccBSI CCGCTC 2 cut(s) 440, 925
AccII CGCG 3 cut(s) 391, 637, 1202
AclWI GGATC 1 cut(s) 451
AcoI YGGCCR 2 cut(s) 492, 788
AcsI RAATTY 5 cut(s) 155, 190, 297, 616, 1368
AcyI GRCGYC 1 cut(s) 1341
AdeI CACNNNGTG 1 cut(s) 1010
AfaI GTAC 3 cut(s) 406, 988, 1112
AfiI CCNNNNNNNGG 7 cut(s) 248, 317, 901, 989, 1058, 1075, 1562
AgeI ACCGGT 1 cut(s) 371
AgsI TTSAA 7 cut(s) 189, 195, 363, 537, 567, 621, 660
AjnI CCWGG 3 cut(s) 128, 316, 1275
AjuI GAANNNNNNNTTGG 2 cut(s) 125, 157
AloI GAACNNNNNNTCC 2 cut(s) 343, 375
Alw21I GWGCWC 1 cut(s) 1551
Alw26I GTCTC 4 cut(s) 231, 506, 938, 1463
Alw44I GTGCAC 1 cut(s) 1547
AlwI GGATC 1 cut(s) 451
AlwNI CAGNNNCTG 2 cut(s) 470, 1379
Ama87I CYCGRG 1 cut(s) 524
AoxI GGCC 7 cut(s) 492, 788, 841, 926, 1207, 1357, 1518
ApaLI GTGCAC 1 cut(s) 1547
ApeKI GCWGC 7 cut(s) 101, 146, 149, 344, 464, 470, 677
ApoI RAATTY 5 cut(s) 155, 190, 297, 616, 1368
ArsI GACNNNNNNTTYG 2 cut(s) 1326, 1358
AsiGI ACCGGT 1 cut(s) 371
Asp718I GGTACC 1 cut(s) 1110
AspLEI GCGC 1 cut(s) 391
AspS9I GGNCC 2 cut(s) 550, 1518
AsuC2I CCSGG 2 cut(s) 719, 1338
AsuHPI GGTGA 9 cut(s) 31, 154, 230, 1234, 1265, 1280, 1312, 1336, 1416
AvaI CYCGRG 1 cut(s) 524
AvaII GGWCC 1 cut(s) 550
AxyI CCTNAGG 1 cut(s) 896
BaeGI GKGCMC 3 cut(s) 719, 1283, 1551
BalI TGGCCA 1 cut(s) 494
BanI GGYRCC 2 cut(s) 961, 1110
BanII GRGCYC 1 cut(s) 308
BauI CACGAG 1 cut(s) 768
BbsI GAAGAC 1 cut(s) 1418
Bbv12I GWGCWC 1 cut(s) 1551
BbvI GCAGC 7 cut(s) 88, 133, 161, 356, 457, 476, 689
BccI CCATC 3 cut(s) 410, 767, 1166
BceAI ACGGC 2 cut(s) 775, 1222
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciT130I CCWGG 3 cut(s) 130, 318, 1277
BcnI CCSGG 2 cut(s) 719, 1338
BcoDI GTCTC 4 cut(s) 231, 506, 938, 1463
BfaI CTAG 6 cut(s) 78, 641, 698, 810, 932, 1149
BfmI CTRYAG 2 cut(s) 147, 675
BfuAI ACCTGC 2 cut(s) 173, 1435
Bme1390I CCNGG 5 cut(s) 130, 318, 719, 1277, 1338
Bme18I GGWCC 1 cut(s) 550
BmeT110I CYCGRG 1 cut(s) 524
BmgT120I GGNCC 2 cut(s) 550, 1518
BmiI GGNNCC 4 cut(s) 305, 893, 963, 1112
BmrFI CCNGG 5 cut(s) 130, 318, 719, 1277, 1338
BmrI ACTGGG 1 cut(s) 1525
BmsI GCATC 2 cut(s) 331, 1188
BmuI ACTGGG 1 cut(s) 1525
BpiI GAAGAC 1 cut(s) 1418
BplI GAGNNNNNCTC 2 cut(s) 295, 327
BpmI CTGGAG 1 cut(s) 1401
BpuMI CCSGG 2 cut(s) 719, 1338
BsaHI GRCGYC 1 cut(s) 1341
BsaJI CCNNGG 3 cut(s) 247, 887, 1276
BsaWI WCCGGW 2 cut(s) 371, 989
BsaXI ACNNNNNCTCC 2 cut(s) 1505, 1535
Bsc4I CCNNNNNNNGG 7 cut(s) 248, 317, 901, 989, 1058, 1075, 1562
Bse118I RCCGGY 3 cut(s) 199, 371, 1051
Bse1I ACTGG 1 cut(s) 1520
Bse21I CCTNAGG 1 cut(s) 896
Bse3DI GCAATG 2 cut(s) 1182, 1271
BseBI CCWGG 3 cut(s) 130, 318, 1277
BseDI CCNNGG 3 cut(s) 247, 887, 1276
BseGI GGATG 3 cut(s) 519, 1026, 1263
BseLI CCNNNNNNNGG 7 cut(s) 248, 317, 901, 989, 1058, 1075, 1562
BseMI GCAATG 2 cut(s) 1182, 1271
BseMII CTCAG 3 cut(s) 242, 873, 912
BseNI ACTGG 1 cut(s) 1520
BseRI GAGGAG 3 cut(s) 44, 303, 904
BseSI GKGCMC 3 cut(s) 719, 1283, 1551
BseXI GCAGC 7 cut(s) 88, 133, 161, 356, 457, 476, 689
BseYI CCCAGC 1 cut(s) 1291
Bsh1236I CGCG 3 cut(s) 391, 637, 1202
BshFI GGCC 7 cut(s) 494, 790, 843, 928, 1209, 1359, 1520
BshNI GGYRCC 2 cut(s) 961, 1110
BshTI ACCGGT 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 1551
BsiHKCI CYCGRG 1 cut(s) 524
BsiSI CCGG 7 cut(s) 200, 372, 719, 990, 1052, 1069, 1338
BslFI GGGAC 1 cut(s) 1092
BslI CCNNNNNNNGG 7 cut(s) 248, 317, 901, 989, 1058, 1075, 1562
BsmAI GTCTC 4 cut(s) 231, 506, 938, 1463
BsmBI CGTCTC 1 cut(s) 506
BsmFI GGGAC 1 cut(s) 1092
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 7 cut(s) 494, 790, 843, 928, 1209, 1359, 1520
BsoBI CYCGRG 1 cut(s) 524
Bsp1286I GDGCHC 4 cut(s) 308, 719, 1283, 1551
Bsp143I GATC 5 cut(s) 443, 516, 733, 1085, 1573
Bsp19I CCATGG 1 cut(s) 247
BspANI GGCC 7 cut(s) 494, 790, 843, 928, 1209, 1359, 1520
BspCNI CTCAG 3 cut(s) 241, 874, 913
BspFNI CGCG 3 cut(s) 391, 637, 1202
BspLI GGNNCC 4 cut(s) 305, 893, 963, 1112
BspMAI CTGCAG 2 cut(s) 151, 679
BspMI ACCTGC 2 cut(s) 173, 1435
BspPI GGATC 1 cut(s) 451
BspT107I GGYRCC 2 cut(s) 961, 1110
BsrBI CCGCTC 2 cut(s) 440, 925
BsrDI GCAATG 2 cut(s) 1182, 1271
BsrFI RCCGGY 3 cut(s) 199, 371, 1051
BsrI ACTGG 1 cut(s) 1520
BssAI RCCGGY 3 cut(s) 199, 371, 1051
BssECI CCNNGG 3 cut(s) 247, 887, 1276
BssMI GATC 5 cut(s) 443, 516, 733, 1085, 1573
BssNI GRCGYC 1 cut(s) 1341
BssSI CACGAG 1 cut(s) 768
BssT1I CCWWGG 1 cut(s) 247
Bst2BI CACGAG 1 cut(s) 768
Bst2UI CCWGG 3 cut(s) 130, 318, 1277
Bst4CI ACNGT 3 cut(s) 280, 1094, 1474
Bst6I CTCTTC 1 cut(s) 1494
BstACI GRCGYC 1 cut(s) 1341
BstAPI GCANNNNNTGC 2 cut(s) 470, 1010
BstC8I GCNNGC 2 cut(s) 740, 1002
BstDEI CTNAG 6 cut(s) 228, 544, 882, 896, 921, 1064
BstDSI CCRYGG 1 cut(s) 247
BstENI CCTNNNNNAGG 1 cut(s) 899
BstF5I GGATG 3 cut(s) 519, 1026, 1263
BstFNI CGCG 3 cut(s) 391, 637, 1202
BstHHI GCGC 1 cut(s) 391
BstKTI GATC 5 cut(s) 446, 519, 736, 1088, 1576
BstMAI GTCTC 4 cut(s) 231, 506, 938, 1463
BstMBI GATC 5 cut(s) 443, 516, 733, 1085, 1573
BstMWI GCNNNNNNNGC 9 cut(s) 83, 134, 143, 220, 464, 470, 479, 674, 1010
BstNI CCWGG 3 cut(s) 130, 318, 1277
BstNSI RCATGY 1 cut(s) 1004
BstSCI CCNGG 5 cut(s) 128, 316, 717, 1275, 1336
BstSFI CTRYAG 2 cut(s) 147, 675
BstSLI GKGCMC 3 cut(s) 719, 1283, 1551
BstUI CGCG 3 cut(s) 391, 637, 1202
BstV1I GCAGC 7 cut(s) 88, 133, 161, 356, 457, 476, 689
BstV2I GAAGAC 1 cut(s) 1418
BstXI CCANNNNNNTGG 1 cut(s) 582
Bsu36I CCTNAGG 1 cut(s) 896
BsuRI GGCC 7 cut(s) 494, 790, 843, 928, 1209, 1359, 1520
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 3 cut(s) 519, 1026, 1263
BtsIMutI CAGTG 5 cut(s) 276, 385, 453, 1099, 1551
BveI ACCTGC 2 cut(s) 173, 1435
Cac8I GCNNGC 2 cut(s) 740, 1002
CaiI CAGNNNCTG 2 cut(s) 470, 1379
CfoI GCGC 1 cut(s) 391
Cfr10I RCCGGY 3 cut(s) 199, 371, 1051
Cfr13I GGNCC 2 cut(s) 550, 1518
CseI GACGC 2 cut(s) 626, 1330
Csp6I GTAC 3 cut(s) 405, 987, 1111
CspAI ACCGGT 1 cut(s) 371
CviAII CATG 7 cut(s) 248, 348, 401, 576, 1001, 1401, 1562
CviQI GTAC 3 cut(s) 405, 987, 1111
DdeI CTNAG 6 cut(s) 228, 544, 882, 896, 921, 1064
DpnI GATC 5 cut(s) 445, 518, 735, 1087, 1575
DpnII GATC 5 cut(s) 443, 516, 733, 1085, 1573
DraI TTTAAA 1 cut(s) 328
DraIII CACNNNGTG 1 cut(s) 1010
DrdI GACNNNNNNGTC 1 cut(s) 1566
DseDI GACNNNNNNGTC 1 cut(s) 1566
EaeI YGGCCR 2 cut(s) 492, 788
Eam1104I CTCTTC 1 cut(s) 1494
EarI CTCTTC 1 cut(s) 1494
EciI GGCGGA 1 cut(s) 473
Eco130I CCWWGG 1 cut(s) 247
Eco24I GRGCYC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 550
Eco81I CCTNAGG 1 cut(s) 896
Eco88I CYCGRG 1 cut(s) 524
EcoNI CCTNNNNNAGG 1 cut(s) 899
EcoRI GAATTC 2 cut(s) 155, 616
EcoRII CCWGG 3 cut(s) 128, 316, 1275
EcoT14I CCWWGG 1 cut(s) 247
EcoT38I GRGCYC 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 247
Esp3I CGTCTC 1 cut(s) 506
FaeI CATG 7 cut(s) 251, 351, 404, 579, 1004, 1404, 1565
FaqI GGGAC 1 cut(s) 1092
FatI CATG 7 cut(s) 247, 347, 400, 575, 1000, 1400, 1561
FauI CCCGC 4 cut(s) 433, 642, 747, 1039
FokI GGATG 3 cut(s) 506, 1033, 1270
FriOI GRGCYC 1 cut(s) 308
FspBI CTAG 6 cut(s) 78, 641, 698, 810, 932, 1149
GlaI GCGC 1 cut(s) 390
GsaI CCCAGC 1 cut(s) 1295
GsuI CTGGAG 1 cut(s) 1401
HaeIII GGCC 7 cut(s) 494, 790, 843, 928, 1209, 1359, 1520
HapII CCGG 7 cut(s) 200, 372, 719, 990, 1052, 1069, 1338
HgaI GACGC 2 cut(s) 626, 1330
HhaI GCGC 1 cut(s) 391
Hin1I GRCGYC 1 cut(s) 1341
Hin1II CATG 7 cut(s) 251, 351, 404, 579, 1004, 1404, 1565
Hin6I GCGC 1 cut(s) 389
HinP1I GCGC 1 cut(s) 389
HindIII AAGCTT 2 cut(s) 118, 365
HinfI GANTC 8 cut(s) 527, 533, 610, 979, 993, 1027, 1270, 1541
HpaII CCGG 7 cut(s) 200, 372, 719, 990, 1052, 1069, 1338
HphI GGTGA 9 cut(s) 31, 154, 230, 1234, 1265, 1280, 1312, 1336, 1416
Hpy166II GTNNAC 2 cut(s) 550, 1549
Hpy188I TCNGA 8 cut(s) 231, 516, 532, 615, 883, 915, 984, 1058
Hpy188III TCNNGA 5 cut(s) 660, 727, 770, 1380, 1571
Hpy8I GTNNAC 2 cut(s) 550, 1549
HpyAV CCTTC 8 cut(s) 753, 854, 1068, 1113, 1198, 1227, 1349, 1483
HpyCH4III ACNGT 3 cut(s) 280, 1094, 1474
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 7 cut(s) 149, 168, 214, 344, 677, 1004, 1549
HpyF10VI GCNNNNNNNGC 9 cut(s) 83, 134, 143, 220, 464, 470, 479, 674, 1010
HpyF3I CTNAG 6 cut(s) 228, 544, 882, 896, 921, 1064
HpySE526I ACGT 1 cut(s) 499
Hsp92I GRCGYC 1 cut(s) 1341
Hsp92II CATG 7 cut(s) 251, 351, 404, 579, 1004, 1404, 1565
HspAI GCGC 1 cut(s) 389
KpnI GGTACC 1 cut(s) 1114
Kzo9I GATC 5 cut(s) 443, 516, 733, 1085, 1573
LmnI GCTCC 6 cut(s) 303, 419, 598, 891, 1316, 1382
Lsp1109I GCAGC 7 cut(s) 88, 133, 161, 356, 457, 476, 689
LweI GCATC 2 cut(s) 331, 1188
MaeI CTAG 6 cut(s) 78, 641, 698, 810, 932, 1149
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 5 cut(s) 289, 601, 907, 1271, 1342
MalI GATC 5 cut(s) 445, 518, 735, 1087, 1575
MbiI CCGCTC 2 cut(s) 440, 925
MboI GATC 5 cut(s) 443, 516, 733, 1085, 1573
MboII GAAGA 7 cut(s) 47, 721, 738, 1234, 1423, 1474, 1511
MfeI CAATTG 1 cut(s) 108
MhlI GDGCHC 4 cut(s) 308, 719, 1283, 1551
MlsI TGGCCA 1 cut(s) 494
MluNI TGGCCA 1 cut(s) 494
MlyI GAGTC 4 cut(s) 536, 973, 1021, 1279
MmeI TCCRAC 1 cut(s) 1235
Mox20I TGGCCA 1 cut(s) 494
MscI TGGCCA 1 cut(s) 494
MseI TTAA 3 cut(s) 122, 327, 1600
Msp20I TGGCCA 1 cut(s) 494
MspA1I CMGCKG 2 cut(s) 152, 467
MspI CCGG 7 cut(s) 200, 372, 719, 990, 1052, 1069, 1338
MspR9I CCNGG 5 cut(s) 130, 318, 719, 1277, 1338
MunI CAATTG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 3 cut(s) 130, 318, 1277
MvnI CGCG 3 cut(s) 391, 637, 1202
MwoI GCNNNNNNNGC 9 cut(s) 83, 134, 143, 220, 464, 470, 479, 674, 1010
NciI CCSGG 2 cut(s) 719, 1338
NcoI CCATGG 1 cut(s) 247
NdeII GATC 5 cut(s) 443, 516, 733, 1085, 1573
NlaIII CATG 7 cut(s) 251, 351, 404, 579, 1004, 1404, 1565
NlaIV GGNNCC 4 cut(s) 305, 893, 963, 1112
NmeAIII GCCGAG 2 cut(s) 199, 912
NmuCI GTSAC 4 cut(s) 289, 601, 1271, 1342
NspI RCATGY 1 cut(s) 1004
PaeI GCATGC 1 cut(s) 1004
PaeR7I CTCGAG 1 cut(s) 524
PaqCI CACCTGC 2 cut(s) 173, 1435
PctI GAATGC 1 cut(s) 88
PfeI GAWTC 4 cut(s) 533, 610, 993, 1541
PflMI CCANNNNNTGG 2 cut(s) 248, 1562
PinAI ACCGGT 1 cut(s) 371
PleI GAGTC 4 cut(s) 535, 973, 1021, 1278
PpsI GAGTC 4 cut(s) 535, 973, 1021, 1278
Psp6I CCWGG 3 cut(s) 128, 316, 1275
PspFI CCCAGC 1 cut(s) 1291
PspGI CCWGG 3 cut(s) 128, 316, 1275
PspN4I GGNNCC 4 cut(s) 305, 893, 963, 1112
PspPI GGNCC 2 cut(s) 550, 1518
PspXI VCTCGAGB 1 cut(s) 524
PstI CTGCAG 2 cut(s) 151, 679
PstNI CAGNNNCTG 2 cut(s) 470, 1379
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 3 cut(s) 406, 988, 1112
RsaNI GTAC 3 cut(s) 405, 987, 1111
SaqAI TTAA 3 cut(s) 122, 327, 1600
Sau3AI GATC 5 cut(s) 443, 516, 733, 1085, 1573
Sau96I GGNCC 2 cut(s) 550, 1518
SchI GAGTC 4 cut(s) 536, 973, 1021, 1279
ScrFI CCNGG 5 cut(s) 130, 318, 719, 1277, 1338
SduI GDGCHC 4 cut(s) 308, 719, 1283, 1551
SfaNI GCATC 2 cut(s) 331, 1188
SfcI CTRYAG 2 cut(s) 147, 675
Sfr274I CTCGAG 1 cut(s) 524
SinI GGWCC 1 cut(s) 550
SlaI CTCGAG 1 cut(s) 524
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
SphI GCATGC 1 cut(s) 1004
SspMI CTAG 6 cut(s) 78, 641, 698, 810, 932, 1149
StyD4I CCNGG 5 cut(s) 128, 316, 717, 1275, 1336
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 3 cut(s) 280, 1094, 1474
TaiI ACGT 1 cut(s) 502
TaqI TCGA 5 cut(s) 436, 525, 629, 996, 1088
TauI GCSGC 4 cut(s) 470, 870, 928, 1051
TfiI GAWTC 4 cut(s) 533, 610, 993, 1541
Tru1I TTAA 3 cut(s) 122, 327, 1600
Tru9I TTAA 3 cut(s) 122, 327, 1600
TscAI CASTG 5 cut(s) 283, 385, 453, 1099, 1551
TseFI GTSAC 4 cut(s) 289, 601, 1271, 1342
TseI GCWGC 7 cut(s) 101, 146, 149, 344, 464, 470, 677
Tsp45I GTSAC 4 cut(s) 289, 601, 1271, 1342
TspDTI ATGAA 5 cut(s) 20, 111, 148, 1180, 1368
TspRI CASTG 5 cut(s) 283, 385, 453, 1099, 1551
Van91I CCANNNNNTGG 2 cut(s) 248, 1562
VneI GTGCAC 1 cut(s) 1547
VpaK11BI GGWCC 1 cut(s) 550
XagI CCTNNNNNAGG 1 cut(s) 899
XapI RAATTY 5 cut(s) 155, 190, 297, 616, 1368
XceI RCATGY 1 cut(s) 1004
XhoI CTCGAG 1 cut(s) 524
XspI CTAG 6 cut(s) 78, 641, 698, 810, 932, 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.