Rmu_sc0000293.1_g000033

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000293.1
OG0000093
Physical Location & Seq
Reverse (-)
170714 .. 171295
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000293.1_g000033.1.cds

Sequence Viewer

Length: 582 bp
atgtgccaaatctgtggggagttccttgagactactaagcactgcctgctcctttgtccatgggcatcagcggtgtggtttggtagctccacaggttacattccggagaaacaaaagattacgactttggaagcatggatattggagattcagaaaaagtcttccgtcctctctgacaattcggtgtacttgatgcaatttgtatttttccagttgtggagtatttggaaacacatatgtgaagttattataaagcatgggatacccagtccttgggctgcgattgaaagtattaatggaaacctttgtgagtggctgaatgtttctggcttgttggagaggactcctcgttcaaacacagctccgggtcctatccctacatggcagccccccttttttccctttgtcaaagttaatgttgatggatcgtgggatagaaacaccctcaaaagtggcattggggtgattattaggaatcgtagaggccattcaattgcgggtgctagtattctgggtaatcacaactcacccattgaagttgaggcagatgcgtcaaaggcctttaacttgctgctttcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

193

Amino Acids

21.57

Weight (kDa)

7.64

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AccB7I CCANNNNNTGG 1 cut(s) 273
AccIII TCCGGA 1 cut(s) 103
AciI CCGC 2 cut(s) 71, 497
AclWI GGATC 1 cut(s) 433
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 4 cut(s) 287, 354, 492, 536
AleI CACNNNNGTG 1 cut(s) 237
AloI GAACNNNNNNTCC 2 cut(s) 334, 366
AluBI AGCT 2 cut(s) 87, 362
AluI AGCT 2 cut(s) 87, 362
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 1 cut(s) 433
Aor13HI TCCGGA 1 cut(s) 103
AoxI GGCC 2 cut(s) 484, 558
ApeKI GCWGC 3 cut(s) 278, 385, 571
AseI ATTAAT 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 368
AsuC2I CCSGG 1 cut(s) 366
AsuHPI GGTGA 2 cut(s) 475, 519
AvaII GGWCC 1 cut(s) 368
BbsI GAAGAC 1 cut(s) 153
BbvI GCAGC 3 cut(s) 265, 397, 558
BccI CCATC 1 cut(s) 416
BciVI GTATCC 1 cut(s) 255
BcnI CCSGG 1 cut(s) 366
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 1 cut(s) 504
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 3 cut(s) 279, 386, 572
BlsI GCNGC 3 cut(s) 280, 387, 573
Bme1390I CCNGG 1 cut(s) 366
Bme18I GGWCC 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 1 cut(s) 369
BmrFI CCNGG 1 cut(s) 366
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 3 cut(s) 74, 183, 538
BmuI ACTGGG 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 331, 363
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 366
BsaJI CCNNGG 2 cut(s) 59, 272
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse1I ACTGG 2 cut(s) 211, 267
BseAI TCCGGA 1 cut(s) 103
BseDI CCNNGG 2 cut(s) 59, 272
BseLI CCNNNNNNNGG 1 cut(s) 273
BseNI ACTGG 2 cut(s) 211, 267
BseRI GAGGAG 1 cut(s) 336
BseXI GCAGC 3 cut(s) 265, 397, 558
BshFI GGCC 2 cut(s) 486, 560
BsiSI CCGG 2 cut(s) 104, 365
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 23
BsnI GGCC 2 cut(s) 486, 560
Bsp13I TCCGGA 1 cut(s) 103
Bsp143I GATC 1 cut(s) 425
Bsp19I CCATGG 1 cut(s) 59
BspACI CCGC 2 cut(s) 71, 497
BspANI GGCC 2 cut(s) 486, 560
BspEI TCCGGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 369
BspPI GGATC 1 cut(s) 433
BsrI ACTGG 2 cut(s) 211, 267
BssECI CCNNGG 2 cut(s) 59, 272
BssMI GATC 1 cut(s) 425
BssT1I CCWWGG 2 cut(s) 59, 272
BstAPI GCANNNNNTGC 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 36
BstDSI CCRYGG 1 cut(s) 59
BstKTI GATC 1 cut(s) 428
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 1 cut(s) 425
BstMWI GCNNNNNNNGC 2 cut(s) 46, 557
BstSCI CCNGG 1 cut(s) 364
BstV1I GCAGC 3 cut(s) 265, 397, 558
BstV2I GAAGAC 1 cut(s) 153
BstXI CCANNNNNNTGG 1 cut(s) 14
BsuI GTATCC 1 cut(s) 255
BsuRI GGCC 2 cut(s) 486, 560
BtgI CCRYGG 1 cut(s) 59
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 368
CseI GACGC 1 cut(s) 540
Csp6I GTAC 1 cut(s) 187
CviAII CATG 4 cut(s) 60, 135, 257, 381
CviJI RGCY 8 cut(s) 87, 278, 316, 330, 362, 388, 486, 560
CviKI_1 RGCY 8 cut(s) 87, 278, 316, 330, 362, 388, 486, 560
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 36
DpnI GATC 1 cut(s) 427
DpnII GATC 1 cut(s) 425
Eco130I CCWWGG 2 cut(s) 59, 272
Eco147I AGGCCT 1 cut(s) 560
Eco47I GGWCC 1 cut(s) 368
EcoO109I RGGNCCY 1 cut(s) 368
EcoT14I CCWWGG 2 cut(s) 59, 272
ErhI CCWWGG 2 cut(s) 59, 272
FaeI CATG 4 cut(s) 63, 138, 260, 384
FaiI YATR 7 cut(s) 61, 136, 236, 238, 251, 258, 382
FatI CATG 4 cut(s) 59, 134, 256, 380
FauI CCCGC 1 cut(s) 490
FauNDI CATATG 1 cut(s) 236
Fnu4HI GCNGC 3 cut(s) 279, 386, 572
Fsp4HI GCNGC 3 cut(s) 279, 386, 572
FspBI CTAG 1 cut(s) 504
GluI GCNGC 3 cut(s) 279, 386, 572
HaeIII GGCC 2 cut(s) 486, 560
HapII CCGG 2 cut(s) 104, 365
HgaI GACGC 1 cut(s) 540
Hin1II CATG 4 cut(s) 63, 138, 260, 384
HinfI GANTC 3 cut(s) 148, 343, 475
HpaII CCGG 2 cut(s) 104, 365
HphI GGTGA 2 cut(s) 475, 519
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 153, 175
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 557
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 4 cut(s) 63, 138, 260, 384
Kpn2I TCCGGA 1 cut(s) 103
Kzo9I GATC 1 cut(s) 425
LmnI GCTCC 3 cut(s) 54, 92, 367
LpnPI CCDG 8 cut(s) 59, 78, 117, 224, 280, 312, 378, 497
Lsp1109I GCAGC 3 cut(s) 265, 397, 558
LweI GCATC 3 cut(s) 74, 183, 538
MaeI CTAG 1 cut(s) 504
MaeIII GTNAC 1 cut(s) 95
MalI GATC 1 cut(s) 427
MboI GATC 1 cut(s) 425
MboII GAAGA 1 cut(s) 153
MfeI CAATTG 1 cut(s) 492
MluCI AATT 3 cut(s) 178, 197, 492
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 6 cut(s) 179, 333, 357, 455, 476, 535
MroI TCCGGA 1 cut(s) 103
MseI TTAA 3 cut(s) 294, 414, 564
MslI CAYNNNNRTG 2 cut(s) 237, 461
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 2 cut(s) 104, 365
MspR9I CCNGG 1 cut(s) 366
MunI CAATTG 1 cut(s) 492
MwoI GCNNNNNNNGC 2 cut(s) 46, 557
NciI CCSGG 1 cut(s) 366
NcoI CCATGG 1 cut(s) 59
NdeI CATATG 1 cut(s) 236
NdeII GATC 1 cut(s) 425
NlaIII CATG 4 cut(s) 63, 138, 260, 384
NlaIV GGNNCC 1 cut(s) 369
OliI CACNNNNGTG 1 cut(s) 237
PceI AGGCCT 1 cut(s) 560
PfeI GAWTC 2 cut(s) 148, 475
PflMI CCANNNNNTGG 1 cut(s) 273
PkrI GCNGC 3 cut(s) 280, 387, 573
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 368
PshBI ATTAAT 1 cut(s) 294
PsiI TTATAA 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 369
PspPI GGNCC 1 cut(s) 368
PspPPI RGGWCCY 1 cut(s) 368
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 2 cut(s) 237, 461
SaqAI TTAA 3 cut(s) 294, 414, 564
SatI GCNGC 3 cut(s) 279, 386, 572
Sau3AI GATC 1 cut(s) 425
Sau96I GGNCC 1 cut(s) 368
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 366
SetI ASST 4 cut(s) 89, 97, 306, 364
SfaNI GCATC 3 cut(s) 74, 183, 538
SinI GGWCC 1 cut(s) 368
SmiMI CAYNNNNRTG 2 cut(s) 237, 461
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 3 cut(s) 178, 197, 492
SseBI AGGCCT 1 cut(s) 560
SsiI CCGC 2 cut(s) 71, 497
SspMI CTAG 1 cut(s) 504
StuI AGGCCT 1 cut(s) 560
StyD4I CCNGG 1 cut(s) 364
StyI CCWWGG 2 cut(s) 59, 272
TasI AATT 3 cut(s) 178, 197, 492
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 2 cut(s) 148, 475
Tru1I TTAA 3 cut(s) 294, 414, 564
Tru9I TTAA 3 cut(s) 294, 414, 564
TscAI CASTG 1 cut(s) 47
TseI GCWGC 3 cut(s) 278, 385, 571
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 1 cut(s) 47
Van91I CCANNNNNTGG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 368
VspI ATTAAT 1 cut(s) 294
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.