ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 91 - 213 | 9.1e-25 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 584, 586, 599 |
| AcoI | YGGCCR | 1 cut(s) | 627 |
| AcsI | RAATTY | 1 cut(s) | 24 |
| AcuI | CTGAAG | 1 cut(s) | 431 |
| AfaI | GTAC | 1 cut(s) | 358 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 253, 310, 519 |
| AgsI | TTSAA | 2 cut(s) | 152, 464 |
| AhlI | ACTAGT | 1 cut(s) | 215 |
| AjnI | CCWGG | 1 cut(s) | 688 |
| AleI | CACNNNNGTG | 2 cut(s) | 86, 306 |
| AluBI | AGCT | 2 cut(s) | 186, 634 |
| AluI | AGCT | 2 cut(s) | 186, 634 |
| Alw21I | GWGCWC | 1 cut(s) | 57 |
| AlwI | GGATC | 3 cut(s) | 584, 586, 599 |
| AoxI | GGCC | 4 cut(s) | 3, 418, 627, 692 |
| ApaI | GGGCCC | 1 cut(s) | 696 |
| ApeKI | GCWGC | 1 cut(s) | 118 |
| ApoI | RAATTY | 1 cut(s) | 24 |
| AspS9I | GGNCC | 4 cut(s) | 78, 418, 692, 693 |
| AsuC2I | CCSGG | 1 cut(s) | 574 |
| AsuHPI | GGTGA | 3 cut(s) | 127, 293, 479 |
| AvaII | GGWCC | 1 cut(s) | 78 |
| BaeGI | GKGCMC | 1 cut(s) | 696 |
| BalI | TGGCCA | 1 cut(s) | 629 |
| BamHI | GGATCC | 1 cut(s) | 591 |
| BanII | GRGCYC | 1 cut(s) | 696 |
| BauI | CACGAG | 1 cut(s) | 597 |
| BbsI | GAAGAC | 1 cut(s) | 300 |
| Bbv12I | GWGCWC | 1 cut(s) | 57 |
| BbvCI | CCTCAGC | 1 cut(s) | 402 |
| BbvI | GCAGC | 1 cut(s) | 130 |
| BccI | CCATC | 2 cut(s) | 272, 395 |
| BceAI | ACGGC | 1 cut(s) | 99 |
| BciT130I | CCWGG | 1 cut(s) | 690 |
| BclI | TGATCA | 1 cut(s) | 537 |
| BcnI | CCSGG | 1 cut(s) | 574 |
| BcuI | ACTAGT | 1 cut(s) | 215 |
| BfaI | CTAG | 3 cut(s) | 131, 216, 234 |
| BisI | GCNGC | 1 cut(s) | 119 |
| BlsI | GCNGC | 1 cut(s) | 120 |
| Bme1390I | CCNGG | 2 cut(s) | 574, 690 |
| Bme18I | GGWCC | 1 cut(s) | 78 |
| BmgT120I | GGNCC | 4 cut(s) | 78, 418, 692, 693 |
| BmiI | GGNNCC | 4 cut(s) | 158, 593, 694, 695 |
| BmrFI | CCNGG | 2 cut(s) | 574, 690 |
| BmsI | GCATC | 3 cut(s) | 199, 372, 610 |
| BpiI | GAAGAC | 1 cut(s) | 300 |
| BpmI | CTGGAG | 1 cut(s) | 541 |
| Bpu10I | CCTNAGC | 1 cut(s) | 402 |
| BpuMI | CCSGG | 1 cut(s) | 574 |
| BsaJI | CCNNGG | 4 cut(s) | 74, 81, 688, 689 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 148, 178 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 253, 310, 519 |
| Bse1I | ACTGG | 2 cut(s) | 524, 593 |
| BseBI | CCWGG | 1 cut(s) | 690 |
| BseDI | CCNNGG | 4 cut(s) | 74, 81, 688, 689 |
| BseGI | GGATG | 2 cut(s) | 283, 363 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 253, 310, 519 |
| BseMII | CTCAG | 1 cut(s) | 393 |
| BseNI | ACTGG | 2 cut(s) | 524, 593 |
| BseSI | GKGCMC | 1 cut(s) | 696 |
| BseXI | GCAGC | 1 cut(s) | 130 |
| BshFI | GGCC | 4 cut(s) | 5, 420, 629, 694 |
| BsiHKAI | GWGCWC | 1 cut(s) | 57 |
| BsiSI | CCGG | 2 cut(s) | 254, 573 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 253, 310, 519 |
| BsnI | GGCC | 4 cut(s) | 5, 420, 629, 694 |
| Bsp120I | GGGCCC | 1 cut(s) | 692 |
| Bsp1286I | GDGCHC | 2 cut(s) | 57, 696 |
| Bsp143I | GATC | 4 cut(s) | 453, 537, 576, 591 |
| BspANI | GGCC | 4 cut(s) | 5, 420, 629, 694 |
| BspCNI | CTCAG | 1 cut(s) | 394 |
| BspHI | TCATGA | 3 cut(s) | 105, 205, 220 |
| BspLI | GGNNCC | 4 cut(s) | 158, 593, 694, 695 |
| BspPI | GGATC | 3 cut(s) | 584, 586, 599 |
| BsrI | ACTGG | 2 cut(s) | 524, 593 |
| BssECI | CCNNGG | 4 cut(s) | 74, 81, 688, 689 |
| BssMI | GATC | 4 cut(s) | 453, 537, 576, 591 |
| BssSI | CACGAG | 1 cut(s) | 597 |
| BssT1I | CCWWGG | 1 cut(s) | 74 |
| Bst2BI | CACGAG | 1 cut(s) | 597 |
| Bst2UI | CCWGG | 1 cut(s) | 690 |
| Bst4CI | ACNGT | 2 cut(s) | 308, 611 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 61 |
| BstC8I | GCNNGC | 2 cut(s) | 188, 636 |
| BstDEI | CTNAG | 2 cut(s) | 402, 671 |
| BstDSI | CCRYGG | 1 cut(s) | 81 |
| BstF5I | GGATG | 2 cut(s) | 283, 363 |
| BstKTI | GATC | 4 cut(s) | 456, 540, 579, 594 |
| BstMBI | GATC | 4 cut(s) | 453, 537, 576, 591 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 61, 635 |
| BstNI | CCWGG | 1 cut(s) | 690 |
| BstSCI | CCNGG | 2 cut(s) | 572, 688 |
| BstSLI | GKGCMC | 1 cut(s) | 696 |
| BstV1I | GCAGC | 1 cut(s) | 130 |
| BstV2I | GAAGAC | 1 cut(s) | 300 |
| BstX2I | RGATCY | 1 cut(s) | 591 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 394 |
| BstYI | RGATCY | 1 cut(s) | 591 |
| BsuRI | GGCC | 4 cut(s) | 5, 420, 629, 694 |
| BtgI | CCRYGG | 1 cut(s) | 81 |
| BtsCI | GGATG | 2 cut(s) | 283, 363 |
| BtsI | GCAGTG | 4 cut(s) | 93, 414, 429, 630 |
| BtsIMutI | CAGTG | 5 cut(s) | 93, 313, 414, 429, 630 |
| Cac8I | GCNNGC | 2 cut(s) | 188, 636 |
| CciI | TCATGA | 3 cut(s) | 105, 205, 220 |
| Cfr13I | GGNCC | 4 cut(s) | 78, 418, 692, 693 |
| Csp6I | GTAC | 1 cut(s) | 357 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 218, 253 |
| CviAII | CATG | 8 cut(s) | 106, 113, 206, 221, 285, 368, 439, 699 |
| CviQI | GTAC | 1 cut(s) | 357 |
| DdeI | CTNAG | 2 cut(s) | 402, 671 |
| DpnI | GATC | 4 cut(s) | 455, 539, 578, 593 |
| DpnII | GATC | 4 cut(s) | 453, 537, 576, 591 |
| EaeI | YGGCCR | 1 cut(s) | 627 |
| Eco130I | CCWWGG | 1 cut(s) | 74 |
| Eco24I | GRGCYC | 1 cut(s) | 696 |
| Eco47I | GGWCC | 1 cut(s) | 78 |
| Eco57I | CTGAAG | 1 cut(s) | 431 |
| EcoO109I | RGGNCCY | 3 cut(s) | 418, 692, 693 |
| EcoRII | CCWGG | 1 cut(s) | 688 |
| EcoT14I | CCWWGG | 1 cut(s) | 74 |
| EcoT38I | GRGCYC | 1 cut(s) | 696 |
| ErhI | CCWWGG | 1 cut(s) | 74 |
| FaeI | CATG | 8 cut(s) | 109, 116, 209, 224, 288, 371, 442, 702 |
| FatI | CATG | 8 cut(s) | 105, 112, 205, 220, 284, 367, 438, 698 |
| FbaI | TGATCA | 1 cut(s) | 537 |
| Fnu4HI | GCNGC | 1 cut(s) | 119 |
| FokI | GGATG | 2 cut(s) | 290, 350 |
| FriOI | GRGCYC | 1 cut(s) | 696 |
| Fsp4HI | GCNGC | 1 cut(s) | 119 |
| FspBI | CTAG | 3 cut(s) | 131, 216, 234 |
| GluI | GCNGC | 1 cut(s) | 119 |
| GsuI | CTGGAG | 1 cut(s) | 541 |
| HaeIII | GGCC | 4 cut(s) | 5, 420, 629, 694 |
| HapII | CCGG | 2 cut(s) | 254, 573 |
| Hin1II | CATG | 8 cut(s) | 109, 116, 209, 224, 288, 371, 442, 702 |
| HincII | GTYRAC | 1 cut(s) | 607 |
| HindII | GTYRAC | 1 cut(s) | 607 |
| HindIII | AAGCTT | 2 cut(s) | 184, 632 |
| HinfI | GANTC | 2 cut(s) | 373, 646 |
| HpaI | GTTAAC | 1 cut(s) | 607 |
| HpaII | CCGG | 2 cut(s) | 254, 573 |
| HphI | GGTGA | 3 cut(s) | 127, 293, 479 |
| Hpy166II | GTNNAC | 2 cut(s) | 343, 607 |
| Hpy188I | TCNGA | 2 cut(s) | 329, 450 |
| Hpy188III | TCNNGA | 5 cut(s) | 41, 106, 206, 221, 599 |
| Hpy8I | GTNNAC | 2 cut(s) | 343, 607 |
| HpyAV | CCTTC | 1 cut(s) | 458 |
| HpyCH4III | ACNGT | 2 cut(s) | 308, 611 |
| HpyCH4V | TGCA | 3 cut(s) | 142, 474, 623 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 61, 635 |
| HpyF3I | CTNAG | 2 cut(s) | 402, 671 |
| Hsp92II | CATG | 8 cut(s) | 109, 116, 209, 224, 288, 371, 442, 702 |
| Ksp22I | TGATCA | 1 cut(s) | 537 |
| KspAI | GTTAAC | 1 cut(s) | 607 |
| Kzo9I | GATC | 4 cut(s) | 453, 537, 576, 591 |
| LmnI | GCTCC | 2 cut(s) | 69, 156 |
| Lsp1109I | GCAGC | 1 cut(s) | 130 |
| LweI | GCATC | 3 cut(s) | 199, 372, 610 |
| MaeI | CTAG | 3 cut(s) | 131, 216, 234 |
| MaeIII | GTNAC | 3 cut(s) | 133, 374, 701 |
| MalI | GATC | 4 cut(s) | 455, 539, 578, 593 |
| MboI | GATC | 4 cut(s) | 453, 537, 576, 591 |
| MboII | GAAGA | 2 cut(s) | 305, 463 |
| MflI | RGATCY | 1 cut(s) | 591 |
| MhlI | GDGCHC | 2 cut(s) | 57, 696 |
| MlsI | TGGCCA | 1 cut(s) | 629 |
| MluCI | AATT | 2 cut(s) | 24, 318 |
| MluNI | TGGCCA | 1 cut(s) | 629 |
| MlyI | GAGTC | 1 cut(s) | 382 |
| MmeI | TCCRAC | 4 cut(s) | 295, 448, 563, 674 |
| MnlI | CCTC | 9 cut(s) | 16, 91, 210, 391, 397, 431, 606, 664, 695 |
| Mox20I | TGGCCA | 1 cut(s) | 629 |
| MscI | TGGCCA | 1 cut(s) | 629 |
| MseI | TTAA | 3 cut(s) | 414, 485, 606 |
| MslI | CAYNNNNRTG | 4 cut(s) | 86, 207, 306, 392 |
| Msp20I | TGGCCA | 1 cut(s) | 629 |
| MspI | CCGG | 2 cut(s) | 254, 573 |
| MspR9I | CCNGG | 2 cut(s) | 574, 690 |
| MvaI | CCWGG | 1 cut(s) | 690 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 61, 635 |
| NciI | CCSGG | 1 cut(s) | 574 |
| NdeII | GATC | 4 cut(s) | 453, 537, 576, 591 |
| NlaIII | CATG | 8 cut(s) | 109, 116, 209, 224, 288, 371, 442, 702 |
| NlaIV | GGNNCC | 4 cut(s) | 158, 593, 694, 695 |
| NmuCI | GTSAC | 2 cut(s) | 133, 374 |
| OliI | CACNNNNGTG | 2 cut(s) | 86, 306 |
| PagI | TCATGA | 3 cut(s) | 105, 205, 220 |
| PasI | CCCWGGG | 1 cut(s) | 689 |
| PfeI | GAWTC | 1 cut(s) | 646 |
| PkrI | GCNGC | 1 cut(s) | 120 |
| PleI | GAGTC | 1 cut(s) | 381 |
| PpsI | GAGTC | 1 cut(s) | 381 |
| Psp6I | CCWGG | 1 cut(s) | 688 |
| PspGI | CCWGG | 1 cut(s) | 688 |
| PspN4I | GGNNCC | 4 cut(s) | 158, 593, 694, 695 |
| PspOMI | GGGCCC | 1 cut(s) | 692 |
| PspPI | GGNCC | 4 cut(s) | 78, 418, 692, 693 |
| PsuI | RGATCY | 1 cut(s) | 591 |
| RsaI | GTAC | 1 cut(s) | 358 |
| RsaNI | GTAC | 1 cut(s) | 357 |
| RseI | CAYNNNNRTG | 4 cut(s) | 86, 207, 306, 392 |
| SaqAI | TTAA | 3 cut(s) | 414, 485, 606 |
| SatI | GCNGC | 1 cut(s) | 119 |
| Sau3AI | GATC | 4 cut(s) | 453, 537, 576, 591 |
| Sau96I | GGNCC | 4 cut(s) | 78, 418, 692, 693 |
| SchI | GAGTC | 1 cut(s) | 382 |
| ScrFI | CCNGG | 2 cut(s) | 574, 690 |
| SduI | GDGCHC | 2 cut(s) | 57, 696 |
| SetI | ASST | 8 cut(s) | 102, 140, 188, 469, 549, 636, 656, 687 |
| SfaNI | GCATC | 3 cut(s) | 199, 372, 610 |
| SinI | GGWCC | 1 cut(s) | 78 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 86, 207, 306, 392 |
| SpeI | ACTAGT | 1 cut(s) | 215 |
| Sse9I | AATT | 2 cut(s) | 24, 318 |
| SspI | AATATT | 1 cut(s) | 148 |
| SspMI | CTAG | 3 cut(s) | 131, 216, 234 |
| StyD4I | CCNGG | 2 cut(s) | 572, 688 |
| StyI | CCWWGG | 1 cut(s) | 74 |
| TaaI | ACNGT | 2 cut(s) | 308, 611 |
| TaqI | TCGA | 1 cut(s) | 390 |
| TasI | AATT | 2 cut(s) | 24, 318 |
| TfiI | GAWTC | 1 cut(s) | 646 |
| Tru1I | TTAA | 3 cut(s) | 414, 485, 606 |
| Tru9I | TTAA | 3 cut(s) | 414, 485, 606 |
| TscAI | CASTG | 5 cut(s) | 93, 313, 414, 436, 630 |
| TseFI | GTSAC | 2 cut(s) | 133, 374 |
| TseI | GCWGC | 1 cut(s) | 118 |
| Tsp45I | GTSAC | 2 cut(s) | 133, 374 |
| TspDTI | ATGAA | 4 cut(s) | 122, 237, 306, 455 |
| TspRI | CASTG | 5 cut(s) | 93, 313, 414, 436, 630 |
| VpaK11BI | GGWCC | 1 cut(s) | 78 |
| XapI | RAATTY | 1 cut(s) | 24 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 311 |
| XspI | CTAG | 3 cut(s) | 131, 216, 234 |