Rmu_ssc0000151.1_g000017

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000151.1
OG0000093
Physical Location & Seq
Forward (+)
58969 .. 60391
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000151.1_g000017.1.cds

Sequence Viewer

Length: 690 bp
atggattttcgggacctacatcacgtcaatctagcccttattgccaagcaaacatggagtctcatccaggatcctgactccttgtgggatatggttctaaaagctcggtacttcctaaattgtggctttgatgcggccacaaaagggcatcgagcctcttggggttggtcgagtctgctagaagctagggatttcattatcaaaattgctactgctaggtgcagcttggtttaccaacattgccaaccttccccaagtctagtgatcggcctcagttcctgctcagctatggaatacatgagtgtttcaaacaccatcaagacaaaacggagagcaactaatctcgcggtttggactccccctcctccaggagtatcagttgtgaactgtgacaccgcctggaatgaaactgataagggtggtctggtcgtggtgattcgggaccataatggggcggtgttggagggaggagcctcatcttcccactcttgctcaatggaagtggctgaagcccaggctctcctgttgggtttgaacttggctgttgagttgaacctgaaaagaataagattggattctctcaatctaatctcatatttgaattcgattgacaaaagtaagaattggaatactcatctgatcattgaggaaatcaaatggaggaagagttttttttatcaagtggattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

229

Amino Acids

25.59

Weight (kDa)

7.65

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 347
AciI CCGC 4 cut(s) 134, 347, 396, 455
AclWI GGATC 2 cut(s) 65, 78
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 1 cut(s) 601
AcuI CTGAAG 1 cut(s) 528
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 3 cut(s) 144, 368, 451
AgsI TTSAA 4 cut(s) 309, 535, 553, 601
AjiI CACGTC 1 cut(s) 25
AjnI CCWGG 4 cut(s) 66, 367, 398, 513
AluBI AGCT 4 cut(s) 104, 185, 225, 287
AluI AGCT 4 cut(s) 104, 185, 225, 287
Alw26I GTCTC 1 cut(s) 65
AlwI GGATC 2 cut(s) 65, 78
AlwNI CAGNNNCTG 1 cut(s) 279
AoxI GGCC 2 cut(s) 135, 268
ApeKI GCWGC 1 cut(s) 222
ApoI RAATTY 1 cut(s) 601
ArsI GACNNNNNNTTYG 2 cut(s) 43, 75
AspS9I GGNCC 2 cut(s) 13, 442
AsuHPI GGTGA 1 cut(s) 445
AvaII GGWCC 2 cut(s) 13, 442
BamHI GGATCC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 234
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 4 cut(s) 68, 369, 400, 515
BclI TGATCA 1 cut(s) 639
BcoDI GTCTC 1 cut(s) 65
BfaI CTAG 5 cut(s) 32, 179, 186, 216, 260
BisI GCNGC 2 cut(s) 135, 223
BlpI GCTNAGC 1 cut(s) 283
BlsI GCNGC 2 cut(s) 136, 224
Bme1390I CCNGG 4 cut(s) 68, 369, 400, 515
Bme18I GGWCC 2 cut(s) 13, 442
BmgBI CACGTC 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 13, 442
BmiI GGNNCC 4 cut(s) 14, 72, 443, 472
BmrFI CCNGG 4 cut(s) 68, 369, 400, 515
BmsI GCATC 2 cut(s) 121, 157
BpmI CTGGAG 1 cut(s) 351
Bpu1102I GCTNAGC 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 513
BsaXI ACNNNNNCTCC 6 cut(s) 346, 363, 376, 393, 652, 682
Bsc4I CCNNNNNNNGG 3 cut(s) 144, 368, 451
Bse3DI GCAATG 1 cut(s) 238
BseBI CCWGG 4 cut(s) 68, 369, 400, 515
BseDI CCNNGG 1 cut(s) 513
BseGI GGATG 1 cut(s) 63
BseLI CCNNNNNNNGG 3 cut(s) 144, 368, 451
BseMI GCAATG 1 cut(s) 238
BseMII CTCAG 2 cut(s) 286, 297
BseRI GAGGAG 2 cut(s) 354, 483
BseXI GCAGC 1 cut(s) 234
BsgI GTGCAG 1 cut(s) 241
Bsh1236I CGCG 1 cut(s) 347
BshFI GGCC 2 cut(s) 137, 270
BslFI GGGAC 2 cut(s) 26, 455
BslI CCNNNNNNNGG 3 cut(s) 144, 368, 451
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 2 cut(s) 26, 455
BsnI GGCC 2 cut(s) 137, 270
Bsp143I GATC 3 cut(s) 70, 264, 639
Bsp1720I GCTNAGC 1 cut(s) 283
BspACI CCGC 4 cut(s) 134, 347, 396, 455
BspANI GGCC 2 cut(s) 137, 270
BspCNI CTCAG 2 cut(s) 285, 296
BspFNI CGCG 1 cut(s) 347
BspLI GGNNCC 4 cut(s) 14, 72, 443, 472
BspPI GGATC 2 cut(s) 65, 78
BsrDI GCAATG 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 513
BssMI GATC 3 cut(s) 70, 264, 639
Bst2UI CCWGG 4 cut(s) 68, 369, 400, 515
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 1 cut(s) 659
BstDEI CTNAG 2 cut(s) 272, 283
BstENI CCTNNNNNAGG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 63
BstFNI CGCG 1 cut(s) 347
BstKTI GATC 3 cut(s) 73, 267, 642
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 3 cut(s) 70, 264, 639
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 4 cut(s) 68, 369, 400, 515
BstSCI CCNGG 4 cut(s) 66, 367, 398, 513
BstUI CGCG 1 cut(s) 347
BstV1I GCAGC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 2 cut(s) 137, 270
BtrI CACGTC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 63
CaiI CAGNNNCTG 1 cut(s) 279
Cfr13I GGNCC 2 cut(s) 13, 442
Csp6I GTAC 1 cut(s) 109
CspCI CAANNNNNGTGG 2 cut(s) 483, 518
CviAII CATG 2 cut(s) 54, 298
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 2 cut(s) 272, 283
DpnI GATC 3 cut(s) 72, 266, 641
DpnII GATC 3 cut(s) 70, 264, 639
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
Eco47I GGWCC 2 cut(s) 13, 442
Eco57I CTGAAG 1 cut(s) 528
EcoNI CCTNNNNNAGG 1 cut(s) 366
EcoO109I RGGNCCY 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 601
EcoRII CCWGG 4 cut(s) 66, 367, 398, 513
FaeI CATG 2 cut(s) 57, 301
FaiI YATR 6 cut(s) 55, 92, 290, 299, 447, 595
FaqI GGGAC 2 cut(s) 26, 455
FatI CATG 2 cut(s) 53, 297
FbaI TGATCA 1 cut(s) 639
Fnu4HI GCNGC 2 cut(s) 135, 223
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 2 cut(s) 135, 223
FspBI CTAG 5 cut(s) 32, 179, 186, 216, 260
GluI GCNGC 2 cut(s) 135, 223
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 2 cut(s) 137, 270
Hin1II CATG 2 cut(s) 57, 301
HinfI GANTC 6 cut(s) 58, 77, 172, 355, 436, 575
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 2 cut(s) 232, 385
Hpy188I TCNGA 1 cut(s) 639
Hpy188III TCNNGA 4 cut(s) 11, 74, 319, 440
Hpy8I GTNNAC 2 cut(s) 232, 385
HpyAV CCTTC 1 cut(s) 258
HpyCH4III ACNGT 1 cut(s) 389
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 272, 283
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 2 cut(s) 57, 301
Ksp22I TGATCA 1 cut(s) 639
Kzo9I GATC 3 cut(s) 70, 264, 639
LmnI GCTCC 1 cut(s) 470
Lsp1109I GCAGC 1 cut(s) 234
LweI GCATC 2 cut(s) 121, 157
MaeI CTAG 5 cut(s) 32, 179, 186, 216, 260
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 389
MalI GATC 3 cut(s) 72, 266, 641
MboI GATC 3 cut(s) 70, 264, 639
MboII GAAGA 2 cut(s) 471, 676
MflI RGATCY 1 cut(s) 70
MluCI AATT 4 cut(s) 118, 204, 601, 622
MlyI GAGTC 4 cut(s) 67, 71, 181, 349
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 9 cut(s) 166, 281, 372, 375, 457, 461, 484, 640, 654
MspR9I CCNGG 4 cut(s) 68, 369, 400, 515
MvaI CCWGG 4 cut(s) 68, 369, 400, 515
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 3 cut(s) 70, 264, 639
NlaIII CATG 2 cut(s) 57, 301
NlaIV GGNNCC 4 cut(s) 14, 72, 443, 472
NmuCI GTSAC 1 cut(s) 389
PfeI GAWTC 2 cut(s) 436, 575
PfoI TCCNGGA 2 cut(s) 66, 367
PkrI GCNGC 2 cut(s) 136, 224
PleI GAGTC 4 cut(s) 66, 71, 180, 349
PpsI GAGTC 4 cut(s) 66, 71, 180, 349
PpuMI RGGWCCY 1 cut(s) 13
Psp5II RGGWCCY 1 cut(s) 13
Psp6I CCWGG 4 cut(s) 66, 367, 398, 513
PspGI CCWGG 4 cut(s) 66, 367, 398, 513
PspN4I GGNNCC 4 cut(s) 14, 72, 443, 472
PspPI GGNCC 2 cut(s) 13, 442
PspPPI RGGWCCY 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 279
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SatI GCNGC 2 cut(s) 135, 223
Sau3AI GATC 3 cut(s) 70, 264, 639
Sau96I GGNCC 2 cut(s) 13, 442
SchI GAGTC 4 cut(s) 67, 71, 181, 349
ScrFI CCNGG 4 cut(s) 68, 369, 400, 515
SetI ASST 9 cut(s) 18, 27, 106, 187, 221, 227, 250, 289, 558
SfaNI GCATC 2 cut(s) 121, 157
SinI GGWCC 2 cut(s) 13, 442
Sse9I AATT 4 cut(s) 118, 204, 601, 622
SsiI CCGC 4 cut(s) 134, 347, 396, 455
SspMI CTAG 5 cut(s) 32, 179, 186, 216, 260
StyD4I CCNGG 4 cut(s) 66, 367, 398, 513
TaaI ACNGT 1 cut(s) 389
TaiI ACGT 1 cut(s) 27
TaqI TCGA 3 cut(s) 151, 170, 605
TasI AATT 4 cut(s) 118, 204, 601, 622
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 2 cut(s) 436, 575
TseFI GTSAC 1 cut(s) 389
TseI GCWGC 1 cut(s) 222
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 2 cut(s) 184, 420
TspGWI ACGGA 1 cut(s) 343
VpaK11BI GGWCC 2 cut(s) 13, 442
XagI CCTNNNNNAGG 1 cut(s) 366
XapI RAATTY 1 cut(s) 601
XspI CTAG 5 cut(s) 32, 179, 186, 216, 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.