Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 150 |
| AccB1I | GGYRCC | 1 cut(s) | 173 |
| AccI | GTMKAC | 1 cut(s) | 81 |
| AciI | CCGC | 2 cut(s) | 365, 375 |
| AcsI | RAATTY | 3 cut(s) | 36, 70, 776 |
| AfaI | GTAC | 1 cut(s) | 816 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 516 |
| AflIII | ACRYGT | 1 cut(s) | 683 |
| AgsI | TTSAA | 6 cut(s) | 35, 251, 338, 350, 358, 445 |
| AluBI | AGCT | 3 cut(s) | 242, 341, 560 |
| AluI | AGCT | 3 cut(s) | 242, 341, 560 |
| Alw21I | GWGCWC | 1 cut(s) | 590 |
| Alw26I | GTCTC | 2 cut(s) | 258, 481 |
| Ama87I | CYCGRG | 1 cut(s) | 134 |
| AoxI | GGCC | 1 cut(s) | 646 |
| ApeKI | GCWGC | 2 cut(s) | 239, 557 |
| ApoI | RAATTY | 3 cut(s) | 36, 70, 776 |
| AspA2I | CCTAGG | 1 cut(s) | 530 |
| AspLEI | GCGC | 1 cut(s) | 218 |
| AsuHPI | GGTGA | 3 cut(s) | 56, 103, 309 |
| AsuII | TTCGAA | 1 cut(s) | 593 |
| AvaI | CYCGRG | 1 cut(s) | 134 |
| AvrII | CCTAGG | 1 cut(s) | 530 |
| AxyI | CCTNAGG | 1 cut(s) | 321 |
| BaeGI | GKGCMC | 2 cut(s) | 178, 612 |
| BanI | GGYRCC | 1 cut(s) | 173 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 739, 771 |
| Bbv12I | GWGCWC | 1 cut(s) | 590 |
| BbvI | GCAGC | 2 cut(s) | 251, 569 |
| BccI | CCATC | 3 cut(s) | 199, 206, 638 |
| BciVI | GTATCC | 1 cut(s) | 574 |
| BcoDI | GTCTC | 2 cut(s) | 258, 481 |
| BfaI | CTAG | 5 cut(s) | 119, 236, 372, 531, 639 |
| BfmI | CTRYAG | 1 cut(s) | 82 |
| BfoI | RGCGCY | 1 cut(s) | 219 |
| BfuAI | ACCTGC | 1 cut(s) | 150 |
| BfuI | GTATCC | 1 cut(s) | 574 |
| BisI | GCNGC | 3 cut(s) | 240, 366, 558 |
| BlnI | CCTAGG | 1 cut(s) | 530 |
| BlsI | GCNGC | 3 cut(s) | 241, 367, 559 |
| BmeT110I | CYCGRG | 1 cut(s) | 134 |
| BmiI | GGNNCC | 1 cut(s) | 175 |
| BmsI | GCATC | 1 cut(s) | 306 |
| Bpu14I | TTCGAA | 1 cut(s) | 593 |
| Bsa29I | ATCGAT | 1 cut(s) | 194 |
| BsaJI | CCNNGG | 2 cut(s) | 530, 567 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 516 |
| Bse21I | CCTNAGG | 1 cut(s) | 321 |
| BseCI | ATCGAT | 1 cut(s) | 194 |
| BseDI | CCNNGG | 2 cut(s) | 530, 567 |
| BseGI | GGATG | 2 cut(s) | 297, 649 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 516 |
| BseMII | CTCAG | 1 cut(s) | 312 |
| BseSI | GKGCMC | 2 cut(s) | 178, 612 |
| BseXI | GCAGC | 2 cut(s) | 251, 569 |
| BsgI | GTGCAG | 1 cut(s) | 178 |
| Bsh1285I | CGRYCG | 1 cut(s) | 314 |
| BshFI | GGCC | 1 cut(s) | 648 |
| BshNI | GGYRCC | 1 cut(s) | 173 |
| BshVI | ATCGAT | 1 cut(s) | 194 |
| BsiEI | CGRYCG | 1 cut(s) | 314 |
| BsiHKAI | GWGCWC | 1 cut(s) | 590 |
| BsiHKCI | CYCGRG | 1 cut(s) | 134 |
| BslFI | GGGAC | 1 cut(s) | 614 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 516 |
| BsmAI | GTCTC | 2 cut(s) | 258, 481 |
| BsmFI | GGGAC | 1 cut(s) | 614 |
| BsnI | GGCC | 1 cut(s) | 648 |
| BsoBI | CYCGRG | 1 cut(s) | 134 |
| Bsp119I | TTCGAA | 1 cut(s) | 593 |
| Bsp1286I | GDGCHC | 3 cut(s) | 178, 590, 612 |
| Bsp143I | GATC | 2 cut(s) | 115, 195 |
| BspACI | CCGC | 2 cut(s) | 365, 375 |
| BspANI | GGCC | 1 cut(s) | 648 |
| BspCNI | CTCAG | 1 cut(s) | 313 |
| BspDI | ATCGAT | 1 cut(s) | 194 |
| BspLI | GGNNCC | 1 cut(s) | 175 |
| BspMI | ACCTGC | 1 cut(s) | 150 |
| BspQI | GCTCTTC | 1 cut(s) | 595 |
| BspT104I | TTCGAA | 1 cut(s) | 593 |
| BspT107I | GGYRCC | 1 cut(s) | 173 |
| BssECI | CCNNGG | 2 cut(s) | 530, 567 |
| BssMI | GATC | 2 cut(s) | 115, 195 |
| BssT1I | CCWWGG | 2 cut(s) | 530, 567 |
| Bst6I | CTCTTC | 3 cut(s) | 511, 595, 787 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 554 |
| BstBI | TTCGAA | 1 cut(s) | 593 |
| BstC8I | GCNNGC | 2 cut(s) | 244, 496 |
| BstDEI | CTNAG | 3 cut(s) | 268, 321, 732 |
| BstF5I | GGATG | 2 cut(s) | 297, 649 |
| BstH2I | RGCGCY | 1 cut(s) | 219 |
| BstHHI | GCGC | 1 cut(s) | 218 |
| BstKTI | GATC | 2 cut(s) | 118, 198 |
| BstMAI | GTCTC | 2 cut(s) | 258, 481 |
| BstMBI | GATC | 2 cut(s) | 115, 195 |
| BstMCI | CGRYCG | 1 cut(s) | 314 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 545, 554 |
| BstNSI | RCATGY | 2 cut(s) | 494, 687 |
| BstSFI | CTRYAG | 1 cut(s) | 82 |
| BstSLI | GKGCMC | 2 cut(s) | 178, 612 |
| BstV1I | GCAGC | 2 cut(s) | 251, 569 |
| Bsu15I | ATCGAT | 1 cut(s) | 194 |
| Bsu36I | CCTNAGG | 1 cut(s) | 321 |
| BsuI | GTATCC | 1 cut(s) | 574 |
| BsuRI | GGCC | 1 cut(s) | 648 |
| BsuTUI | ATCGAT | 1 cut(s) | 194 |
| BtsCI | GGATG | 2 cut(s) | 297, 649 |
| BveI | ACCTGC | 1 cut(s) | 150 |
| Cac8I | GCNNGC | 2 cut(s) | 244, 496 |
| CfoI | GCGC | 1 cut(s) | 218 |
| ClaI | ATCGAT | 1 cut(s) | 194 |
| Csp6I | GTAC | 1 cut(s) | 815 |
| CviAII | CATG | 4 cut(s) | 170, 491, 684, 759 |
| CviJI | RGCY | 5 cut(s) | 242, 341, 368, 560, 648 |
| CviKI_1 | RGCY | 5 cut(s) | 242, 341, 368, 560, 648 |
| CviQI | GTAC | 1 cut(s) | 815 |
| DdeI | CTNAG | 3 cut(s) | 268, 321, 732 |
| DpnI | GATC | 2 cut(s) | 117, 197 |
| DpnII | GATC | 2 cut(s) | 115, 195 |
| Eam1104I | CTCTTC | 3 cut(s) | 511, 595, 787 |
| EarI | CTCTTC | 3 cut(s) | 511, 595, 787 |
| Eco130I | CCWWGG | 2 cut(s) | 530, 567 |
| Eco81I | CCTNAGG | 1 cut(s) | 321 |
| Eco88I | CYCGRG | 1 cut(s) | 134 |
| EcoRI | GAATTC | 1 cut(s) | 776 |
| EcoT14I | CCWWGG | 2 cut(s) | 530, 567 |
| ErhI | CCWWGG | 2 cut(s) | 530, 567 |
| FaeI | CATG | 4 cut(s) | 173, 494, 687, 762 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 330, 362 |
| FaqI | GGGAC | 1 cut(s) | 614 |
| FatI | CATG | 4 cut(s) | 169, 490, 683, 758 |
| FblI | GTMKAC | 1 cut(s) | 81 |
| Fnu4HI | GCNGC | 3 cut(s) | 240, 366, 558 |
| FokI | GGATG | 2 cut(s) | 284, 656 |
| Fsp4HI | GCNGC | 3 cut(s) | 240, 366, 558 |
| FspBI | CTAG | 5 cut(s) | 119, 236, 372, 531, 639 |
| GlaI | GCGC | 1 cut(s) | 217 |
| GluI | GCNGC | 3 cut(s) | 240, 366, 558 |
| HaeII | RGCGCY | 1 cut(s) | 219 |
| HaeIII | GGCC | 1 cut(s) | 648 |
| HhaI | GCGC | 1 cut(s) | 218 |
| Hin1II | CATG | 4 cut(s) | 173, 494, 687, 762 |
| Hin6I | GCGC | 1 cut(s) | 216 |
| HinP1I | GCGC | 1 cut(s) | 216 |
| HincII | GTYRAC | 1 cut(s) | 53 |
| HindII | GTYRAC | 1 cut(s) | 53 |
| HinfI | GANTC | 4 cut(s) | 87, 307, 526, 737 |
| HphI | GGTGA | 3 cut(s) | 56, 103, 309 |
| Hpy166II | GTNNAC | 2 cut(s) | 53, 82 |
| Hpy188I | TCNGA | 1 cut(s) | 432 |
| Hpy188III | TCNNGA | 1 cut(s) | 119 |
| Hpy8I | GTNNAC | 2 cut(s) | 53, 82 |
| HpyAV | CCTTC | 4 cut(s) | 217, 344, 521, 762 |
| HpyCH4V | TGCA | 5 cut(s) | 159, 169, 297, 408, 557 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 545, 554 |
| HpyF3I | CTNAG | 3 cut(s) | 268, 321, 732 |
| Hsp92II | CATG | 4 cut(s) | 173, 494, 687, 762 |
| HspAI | GCGC | 1 cut(s) | 216 |
| Kzo9I | GATC | 2 cut(s) | 115, 195 |
| LguI | GCTCTTC | 1 cut(s) | 595 |
| LpnPI | CCDG | 4 cut(s) | 145, 228, 333, 707 |
| Lsp1109I | GCAGC | 2 cut(s) | 251, 569 |
| LweI | GCATC | 1 cut(s) | 306 |
| MaeI | CTAG | 5 cut(s) | 119, 236, 372, 531, 639 |
| MaeIII | GTNAC | 2 cut(s) | 127, 315 |
| MalI | GATC | 2 cut(s) | 117, 197 |
| MboI | GATC | 2 cut(s) | 115, 195 |
| MboII | GAAGA | 6 cut(s) | 488, 498, 582, 712, 747, 774 |
| MhlI | GDGCHC | 3 cut(s) | 178, 590, 612 |
| MluCI | AATT | 7 cut(s) | 12, 36, 42, 70, 292, 426, 776 |
| MlyI | GAGTC | 1 cut(s) | 746 |
| MnlI | CCTC | 6 cut(s) | 130, 188, 316, 573, 624, 659 |
| MseI | TTAA | 3 cut(s) | 41, 204, 770 |
| MslI | CAYNNNNRTG | 1 cut(s) | 384 |
| MspA1I | CMGCKG | 2 cut(s) | 242, 560 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 545, 554 |
| NdeII | GATC | 2 cut(s) | 115, 195 |
| NlaIII | CATG | 4 cut(s) | 173, 494, 687, 762 |
| NlaIV | GGNNCC | 1 cut(s) | 175 |
| NmuCI | GTSAC | 2 cut(s) | 127, 315 |
| NspI | RCATGY | 2 cut(s) | 494, 687 |
| NspV | TTCGAA | 1 cut(s) | 593 |
| PaeR7I | CTCGAG | 1 cut(s) | 134 |
| PciI | ACATGT | 1 cut(s) | 683 |
| PciSI | GCTCTTC | 1 cut(s) | 595 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 27 |
| PfeI | GAWTC | 3 cut(s) | 87, 307, 526 |
| PkrI | GCNGC | 3 cut(s) | 241, 367, 559 |
| PleI | GAGTC | 1 cut(s) | 745 |
| PpsI | GAGTC | 1 cut(s) | 745 |
| PscI | ACATGT | 1 cut(s) | 683 |
| PspN4I | GGNNCC | 1 cut(s) | 175 |
| PspXI | VCTCGAGB | 1 cut(s) | 134 |
| PvuII | CAGCTG | 2 cut(s) | 242, 560 |
| RsaI | GTAC | 1 cut(s) | 816 |
| RsaNI | GTAC | 1 cut(s) | 815 |
| RseI | CAYNNNNRTG | 1 cut(s) | 384 |
| SapI | GCTCTTC | 1 cut(s) | 595 |
| SaqAI | TTAA | 3 cut(s) | 41, 204, 770 |
| SatI | GCNGC | 3 cut(s) | 240, 366, 558 |
| Sau3AI | GATC | 2 cut(s) | 115, 195 |
| SchI | GAGTC | 1 cut(s) | 746 |
| SduI | GDGCHC | 3 cut(s) | 178, 590, 612 |
| SetI | ASST | 9 cut(s) | 8, 164, 244, 322, 343, 355, 451, 536, 562 |
| SfaNI | GCATC | 1 cut(s) | 306 |
| SfcI | CTRYAG | 1 cut(s) | 82 |
| Sfr274I | CTCGAG | 1 cut(s) | 134 |
| SfuI | TTCGAA | 1 cut(s) | 593 |
| SlaI | CTCGAG | 1 cut(s) | 134 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 384 |
| SmlI | CTYRAG | 1 cut(s) | 134 |
| SmoI | CTYRAG | 1 cut(s) | 134 |
| Sse9I | AATT | 7 cut(s) | 12, 36, 42, 70, 292, 426, 776 |
| SsiI | CCGC | 2 cut(s) | 365, 375 |
| SspI | AATATT | 1 cut(s) | 793 |
| SspMI | CTAG | 5 cut(s) | 119, 236, 372, 531, 639 |
| StyI | CCWWGG | 2 cut(s) | 530, 567 |
| TaqI | TCGA | 4 cut(s) | 21, 135, 194, 593 |
| TaqII | GACCGA | 1 cut(s) | 300 |
| TasI | AATT | 7 cut(s) | 12, 36, 42, 70, 292, 426, 776 |
| TatI | WGTACW | 1 cut(s) | 814 |
| TauI | GCSGC | 1 cut(s) | 368 |
| TfiI | GAWTC | 3 cut(s) | 87, 307, 526 |
| Tru1I | TTAA | 3 cut(s) | 41, 204, 770 |
| Tru9I | TTAA | 3 cut(s) | 41, 204, 770 |
| TseFI | GTSAC | 2 cut(s) | 127, 315 |
| TseI | GCWGC | 2 cut(s) | 239, 557 |
| Tsp45I | GTSAC | 2 cut(s) | 127, 315 |
| TspDTI | ATGAA | 3 cut(s) | 48, 503, 747 |
| TspGWI | ACGGA | 1 cut(s) | 19 |
| XapI | RAATTY | 3 cut(s) | 36, 70, 776 |
| XbaI | TCTAGA | 1 cut(s) | 118 |
| XceI | RCATGY | 2 cut(s) | 494, 687 |
| XhoI | CTCGAG | 1 cut(s) | 134 |
| XmaJI | CCTAGG | 1 cut(s) | 530 |
| XmiI | GTMKAC | 1 cut(s) | 81 |
| XspI | CTAG | 5 cut(s) | 119, 236, 372, 531, 639 |