Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 47 - 126 | 1.9e-11 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 525 |
| AciI | CCGC | 1 cut(s) | 260 |
| AcsI | RAATTY | 1 cut(s) | 163 |
| AcuI | CTGAAG | 2 cut(s) | 383, 535 |
| AfaI | GTAC | 1 cut(s) | 495 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 484, 485, 525 |
| AgsI | TTSAA | 1 cut(s) | 133 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 106 |
| AjnI | CCWGG | 1 cut(s) | 104 |
| AluBI | AGCT | 5 cut(s) | 8, 188, 268, 307, 429 |
| AluI | AGCT | 5 cut(s) | 8, 188, 268, 307, 429 |
| Alw21I | GWGCWC | 1 cut(s) | 270 |
| Alw26I | GTCTC | 2 cut(s) | 114, 175 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 361 |
| ApeKI | GCWGC | 2 cut(s) | 17, 185 |
| ApoI | RAATTY | 1 cut(s) | 163 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 548 |
| AspS9I | GGNCC | 1 cut(s) | 514 |
| AvaII | GGWCC | 1 cut(s) | 514 |
| BanII | GRGCYC | 1 cut(s) | 270 |
| Bbv12I | GWGCWC | 1 cut(s) | 270 |
| BbvI | GCAGC | 2 cut(s) | 4, 197 |
| BccI | CCATC | 2 cut(s) | 52, 215 |
| BciT130I | CCWGG | 1 cut(s) | 106 |
| BcoDI | GTCTC | 2 cut(s) | 114, 175 |
| BisI | GCNGC | 3 cut(s) | 18, 186, 261 |
| BlpI | GCTNAGC | 1 cut(s) | 264 |
| BlsI | GCNGC | 3 cut(s) | 19, 187, 262 |
| Bme1390I | CCNGG | 1 cut(s) | 106 |
| Bme18I | GGWCC | 1 cut(s) | 514 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 106 |
| BmgT120I | GGNCC | 1 cut(s) | 514 |
| BmiI | GGNNCC | 1 cut(s) | 516 |
| BmrFI | CCNGG | 1 cut(s) | 106 |
| BmsI | GCATC | 3 cut(s) | 136, 341, 381 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 546 |
| BpmI | CTGGAG | 1 cut(s) | 225 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 264 |
| BpuEI | CTTGAG | 1 cut(s) | 366 |
| BsaI | GGTCTC | 2 cut(s) | 114, 175 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 94, 124 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 484, 485, 525 |
| Bse1I | ACTGG | 1 cut(s) | 320 |
| BseBI | CCWGG | 1 cut(s) | 106 |
| BseGI | GGATG | 1 cut(s) | 372 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 484, 485, 525 |
| BseMII | CTCAG | 1 cut(s) | 255 |
| BseNI | ACTGG | 1 cut(s) | 320 |
| BseRI | GAGGAG | 2 cut(s) | 102, 433 |
| BseXI | GCAGC | 2 cut(s) | 4, 197 |
| BsiHKAI | GWGCWC | 1 cut(s) | 270 |
| BslFI | GGGAC | 1 cut(s) | 500 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 484, 485, 525 |
| BsmAI | GTCTC | 2 cut(s) | 114, 175 |
| BsmFI | GGGAC | 1 cut(s) | 500 |
| BsmI | GAATGC | 1 cut(s) | 501 |
| Bso31I | GGTCTC | 2 cut(s) | 114, 175 |
| Bsp1286I | GDGCHC | 1 cut(s) | 270 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 264 |
| BspACI | CCGC | 1 cut(s) | 260 |
| BspCNI | CTCAG | 1 cut(s) | 256 |
| BspLI | GGNNCC | 1 cut(s) | 516 |
| BspTNI | GGTCTC | 2 cut(s) | 114, 175 |
| BsrI | ACTGG | 1 cut(s) | 320 |
| Bst2UI | CCWGG | 1 cut(s) | 106 |
| Bst6I | CTCTTC | 1 cut(s) | 453 |
| BstDEI | CTNAG | 1 cut(s) | 264 |
| BstF5I | GGATG | 1 cut(s) | 372 |
| BstMAI | GTCTC | 2 cut(s) | 114, 175 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 14 |
| BstNI | CCWGG | 1 cut(s) | 106 |
| BstSCI | CCNGG | 1 cut(s) | 104 |
| BstV1I | GCAGC | 2 cut(s) | 4, 197 |
| BtsCI | GGATG | 1 cut(s) | 372 |
| BtsIMutI | CAGTG | 1 cut(s) | 141 |
| CaiI | CAGNNNCTG | 1 cut(s) | 361 |
| Cfr13I | GGNCC | 1 cut(s) | 514 |
| CsiI | ACCWGGT | 1 cut(s) | 104 |
| Csp6I | GTAC | 1 cut(s) | 494 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 79, 114 |
| CviQI | GTAC | 1 cut(s) | 494 |
| DdeI | CTNAG | 1 cut(s) | 264 |
| DriI | GACNNNNNGTC | 1 cut(s) | 106 |
| Eam1104I | CTCTTC | 1 cut(s) | 453 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 106 |
| EarI | CTCTTC | 1 cut(s) | 453 |
| Ecl136II | GAGCTC | 1 cut(s) | 268 |
| Eco24I | GRGCYC | 1 cut(s) | 270 |
| Eco31I | GGTCTC | 2 cut(s) | 114, 175 |
| Eco47I | GGWCC | 1 cut(s) | 514 |
| Eco53kI | GAGCTC | 1 cut(s) | 268 |
| Eco57I | CTGAAG | 2 cut(s) | 383, 535 |
| EcoICRI | GAGCTC | 1 cut(s) | 268 |
| EcoRI | GAATTC | 1 cut(s) | 163 |
| EcoRII | CCWGG | 1 cut(s) | 104 |
| EcoT38I | GRGCYC | 1 cut(s) | 270 |
| FaiI | YATR | 6 cut(s) | 206, 414, 426, 521, 526, 535 |
| FaqI | GGGAC | 1 cut(s) | 500 |
| Fnu4HI | GCNGC | 3 cut(s) | 18, 186, 261 |
| FokI | GGATG | 1 cut(s) | 359 |
| FriOI | GRGCYC | 1 cut(s) | 270 |
| Fsp4HI | GCNGC | 3 cut(s) | 18, 186, 261 |
| GluI | GCNGC | 3 cut(s) | 18, 186, 261 |
| GsuI | CTGGAG | 1 cut(s) | 225 |
| HindIII | AAGCTT | 2 cut(s) | 6, 305 |
| HinfI | GANTC | 3 cut(s) | 35, 338, 391 |
| Hpy166II | GTNNAC | 1 cut(s) | 139 |
| Hpy188I | TCNGA | 3 cut(s) | 337, 363, 554 |
| Hpy188III | TCNNGA | 3 cut(s) | 23, 32, 383 |
| Hpy8I | GTNNAC | 1 cut(s) | 139 |
| HpyAV | CCTTC | 5 cut(s) | 278, 387, 409, 429, 559 |
| HpyCH4V | TGCA | 4 cut(s) | 185, 275, 302, 501 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 14 |
| HpyF3I | CTNAG | 1 cut(s) | 264 |
| LmnI | GCTCC | 2 cut(s) | 273, 434 |
| Lsp1109I | GCAGC | 2 cut(s) | 4, 197 |
| LweI | GCATC | 3 cut(s) | 136, 341, 381 |
| MabI | ACCWGGT | 1 cut(s) | 104 |
| MboII | GAAGA | 2 cut(s) | 222, 440 |
| MhlI | GDGCHC | 1 cut(s) | 270 |
| MluCI | AATT | 2 cut(s) | 163, 213 |
| MlyI | GAGTC | 1 cut(s) | 385 |
| MnlI | CCTC | 5 cut(s) | 85, 123, 321, 443, 454 |
| MroXI | GAANNNNTTC | 1 cut(s) | 548 |
| MseI | TTAA | 1 cut(s) | 53 |
| MspR9I | CCNGG | 1 cut(s) | 106 |
| Mva1269I | GAATGC | 1 cut(s) | 501 |
| MvaI | CCWGG | 1 cut(s) | 106 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 14 |
| NlaIV | GGNNCC | 1 cut(s) | 516 |
| PctI | GAATGC | 1 cut(s) | 501 |
| PdmI | GAANNNNTTC | 1 cut(s) | 548 |
| PfeI | GAWTC | 2 cut(s) | 35, 338 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 525 |
| PkrI | GCNGC | 3 cut(s) | 19, 187, 262 |
| PleI | GAGTC | 1 cut(s) | 385 |
| PpsI | GAGTC | 1 cut(s) | 385 |
| Psp124BI | GAGCTC | 1 cut(s) | 270 |
| Psp6I | CCWGG | 1 cut(s) | 104 |
| PspGI | CCWGG | 1 cut(s) | 104 |
| PspN4I | GGNNCC | 1 cut(s) | 516 |
| PspPI | GGNCC | 1 cut(s) | 514 |
| PstNI | CAGNNNCTG | 1 cut(s) | 361 |
| RsaI | GTAC | 1 cut(s) | 495 |
| RsaNI | GTAC | 1 cut(s) | 494 |
| SacI | GAGCTC | 1 cut(s) | 270 |
| SaqAI | TTAA | 1 cut(s) | 53 |
| SatI | GCNGC | 3 cut(s) | 18, 186, 261 |
| Sau96I | GGNCC | 1 cut(s) | 514 |
| SchI | GAGTC | 1 cut(s) | 385 |
| ScrFI | CCNGG | 1 cut(s) | 106 |
| SduI | GDGCHC | 1 cut(s) | 270 |
| SetI | ASST | 7 cut(s) | 10, 107, 190, 270, 309, 431, 499 |
| SexAI | ACCWGGT | 1 cut(s) | 104 |
| SfaNI | GCATC | 3 cut(s) | 136, 341, 381 |
| SinI | GGWCC | 1 cut(s) | 514 |
| SmlI | CTYRAG | 1 cut(s) | 381 |
| SmoI | CTYRAG | 1 cut(s) | 381 |
| Sse9I | AATT | 2 cut(s) | 163, 213 |
| SsiI | CCGC | 1 cut(s) | 260 |
| SstI | GAGCTC | 1 cut(s) | 270 |
| StyD4I | CCNGG | 1 cut(s) | 104 |
| TaqII | GACCGA | 1 cut(s) | 157 |
| TasI | AATT | 2 cut(s) | 163, 213 |
| TauI | GCSGC | 1 cut(s) | 263 |
| TfiI | GAWTC | 2 cut(s) | 35, 338 |
| Tru1I | TTAA | 1 cut(s) | 53 |
| Tru9I | TTAA | 1 cut(s) | 53 |
| TscAI | CASTG | 1 cut(s) | 148 |
| TseI | GCWGC | 2 cut(s) | 17, 185 |
| TspDTI | ATGAA | 2 cut(s) | 17, 440 |
| TspGWI | ACGGA | 2 cut(s) | 243, 556 |
| TspRI | CASTG | 1 cut(s) | 148 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 525 |
| VpaK11BI | GGWCC | 1 cut(s) | 514 |
| XapI | RAATTY | 1 cut(s) | 163 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 526 |
| XmnI | GAANNNNTTC | 1 cut(s) | 548 |