ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 236, 699 |
| Acc36I | ACCTGC | 1 cut(s) | 411 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 289 |
| AccII | CGCG | 2 cut(s) | 176, 182 |
| AciI | CCGC | 6 cut(s) | 115, 180, 378, 594, 605, 659 |
| AcoI | YGGCCR | 2 cut(s) | 211, 280 |
| AcsI | RAATTY | 2 cut(s) | 339, 471 |
| AcyI | GRCGYC | 1 cut(s) | 273 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 186, 223, 289, 321, 604 |
| AflII | CTTAAG | 1 cut(s) | 680 |
| AgsI | TTSAA | 3 cut(s) | 59, 476, 521 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 630 |
| AjnI | CCWGG | 1 cut(s) | 450 |
| AluBI | AGCT | 2 cut(s) | 29, 244 |
| AluI | AGCT | 2 cut(s) | 29, 244 |
| Alw26I | GTCTC | 2 cut(s) | 54, 346 |
| Ama87I | CYCGRG | 1 cut(s) | 154 |
| AoxI | GGCC | 4 cut(s) | 211, 280, 292, 606 |
| ApeKI | GCWGC | 2 cut(s) | 29, 602 |
| ApoI | RAATTY | 2 cut(s) | 339, 471 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 392, 424 |
| AspS9I | GGNCC | 2 cut(s) | 189, 292 |
| AsuC2I | CCSGG | 2 cut(s) | 107, 169 |
| AvaI | CYCGRG | 1 cut(s) | 154 |
| AvaII | GGWCC | 1 cut(s) | 189 |
| BbsI | GAAGAC | 2 cut(s) | 533, 626 |
| BbvI | GCAGC | 2 cut(s) | 16, 589 |
| BccI | CCATC | 4 cut(s) | 77, 636, 670, 683 |
| BceAI | ACGGC | 1 cut(s) | 279 |
| BciT130I | CCWGG | 1 cut(s) | 452 |
| BclI | TGATCA | 1 cut(s) | 433 |
| BcnI | CCSGG | 2 cut(s) | 107, 169 |
| BcoDI | GTCTC | 2 cut(s) | 54, 346 |
| BfaI | CTAG | 5 cut(s) | 69, 74, 335, 428, 648 |
| BfmI | CTRYAG | 1 cut(s) | 261 |
| BfrI | CTTAAG | 1 cut(s) | 680 |
| BfuAI | ACCTGC | 1 cut(s) | 411 |
| BisI | GCNGC | 3 cut(s) | 30, 603, 606 |
| BlsI | GCNGC | 3 cut(s) | 31, 604, 607 |
| Bme1390I | CCNGG | 3 cut(s) | 107, 169, 452 |
| Bme18I | GGWCC | 1 cut(s) | 189 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 630 |
| BmeT110I | CYCGRG | 1 cut(s) | 154 |
| BmgT120I | GGNCC | 2 cut(s) | 189, 292 |
| BmiI | GGNNCC | 1 cut(s) | 190 |
| BmrFI | CCNGG | 3 cut(s) | 107, 169, 452 |
| BmrI | ACTGGG | 2 cut(s) | 195, 370 |
| BmuI | ACTGGG | 2 cut(s) | 195, 370 |
| BpiI | GAAGAC | 2 cut(s) | 533, 626 |
| BpmI | CTGGAG | 1 cut(s) | 583 |
| BpuMI | CCSGG | 2 cut(s) | 107, 169 |
| BsaHI | GRCGYC | 1 cut(s) | 273 |
| BsaJI | CCNNGG | 1 cut(s) | 222 |
| BsaWI | WCCGGW | 1 cut(s) | 344 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 523, 553 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 186, 223, 289, 321, 604 |
| Bse1I | ACTGG | 2 cut(s) | 190, 365 |
| BseBI | CCWGG | 1 cut(s) | 452 |
| BseDI | CCNNGG | 1 cut(s) | 222 |
| BseGI | GGATG | 2 cut(s) | 89, 662 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 186, 223, 289, 321, 604 |
| BseMII | CTCAG | 2 cut(s) | 65, 543 |
| BseNI | ACTGG | 2 cut(s) | 190, 365 |
| BseRI | GAGGAG | 3 cut(s) | 196, 547, 550 |
| BseXI | GCAGC | 2 cut(s) | 16, 589 |
| Bsh1236I | CGCG | 2 cut(s) | 176, 182 |
| Bsh1285I | CGRYCG | 1 cut(s) | 180 |
| BshFI | GGCC | 4 cut(s) | 213, 282, 294, 608 |
| BsiEI | CGRYCG | 1 cut(s) | 180 |
| BsiHKCI | CYCGRG | 1 cut(s) | 154 |
| BsiSI | CCGG | 6 cut(s) | 107, 169, 210, 251, 279, 345 |
| BslFI | GGGAC | 1 cut(s) | 637 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 186, 223, 289, 321, 604 |
| BsmAI | GTCTC | 2 cut(s) | 54, 346 |
| BsmFI | GGGAC | 1 cut(s) | 637 |
| BsmI | GAATGC | 1 cut(s) | 592 |
| BsnI | GGCC | 4 cut(s) | 213, 282, 294, 608 |
| BsoBI | CYCGRG | 1 cut(s) | 154 |
| Bsp143I | GATC | 3 cut(s) | 132, 424, 433 |
| BspACI | CCGC | 6 cut(s) | 115, 180, 378, 594, 605, 659 |
| BspANI | GGCC | 4 cut(s) | 213, 282, 294, 608 |
| BspCNI | CTCAG | 2 cut(s) | 64, 544 |
| BspFNI | CGCG | 2 cut(s) | 176, 182 |
| BspLI | GGNNCC | 1 cut(s) | 190 |
| BspMAI | CTGCAG | 1 cut(s) | 265 |
| BspMI | ACCTGC | 1 cut(s) | 411 |
| BspTI | CTTAAG | 1 cut(s) | 680 |
| BsrI | ACTGG | 2 cut(s) | 190, 365 |
| BssECI | CCNNGG | 1 cut(s) | 222 |
| BssMI | GATC | 3 cut(s) | 132, 424, 433 |
| BssNI | GRCGYC | 1 cut(s) | 273 |
| Bst2UI | CCWGG | 1 cut(s) | 452 |
| Bst4CI | ACNGT | 2 cut(s) | 287, 628 |
| Bst6I | CTCTTC | 1 cut(s) | 482 |
| BstACI | GRCGYC | 1 cut(s) | 273 |
| BstAFI | CTTAAG | 1 cut(s) | 680 |
| BstC8I | GCNNGC | 1 cut(s) | 34 |
| BstDEI | CTNAG | 2 cut(s) | 51, 552 |
| BstDSI | CCRYGG | 1 cut(s) | 222 |
| BstF5I | GGATG | 2 cut(s) | 89, 662 |
| BstFNI | CGCG | 2 cut(s) | 176, 182 |
| BstKTI | GATC | 3 cut(s) | 135, 427, 436 |
| BstMAI | GTCTC | 2 cut(s) | 54, 346 |
| BstMBI | GATC | 3 cut(s) | 132, 424, 433 |
| BstMCI | CGRYCG | 1 cut(s) | 180 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 121, 210, 260, 602, 614, 667 |
| BstNI | CCWGG | 1 cut(s) | 452 |
| BstSCI | CCNGG | 3 cut(s) | 105, 167, 450 |
| BstSFI | CTRYAG | 1 cut(s) | 261 |
| BstUI | CGCG | 2 cut(s) | 176, 182 |
| BstV1I | GCAGC | 2 cut(s) | 16, 589 |
| BstV2I | GAAGAC | 2 cut(s) | 533, 626 |
| BsuRI | GGCC | 4 cut(s) | 213, 282, 294, 608 |
| BtgI | CCRYGG | 1 cut(s) | 222 |
| BtgZI | GCGATG | 1 cut(s) | 96 |
| BtsCI | GGATG | 2 cut(s) | 89, 662 |
| BveI | ACCTGC | 1 cut(s) | 411 |
| Cac8I | GCNNGC | 1 cut(s) | 34 |
| Cfr13I | GGNCC | 2 cut(s) | 189, 292 |
| CseI | GACGC | 1 cut(s) | 281 |
| CviAII | CATG | 2 cut(s) | 94, 599 |
| DdeI | CTNAG | 2 cut(s) | 51, 552 |
| DpnI | GATC | 3 cut(s) | 134, 426, 435 |
| DpnII | GATC | 3 cut(s) | 132, 424, 433 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 236, 699 |
| DriI | GACNNNNNGTC | 1 cut(s) | 630 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 236, 699 |
| EaeI | YGGCCR | 2 cut(s) | 211, 280 |
| Eam1104I | CTCTTC | 1 cut(s) | 482 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 630 |
| EarI | CTCTTC | 1 cut(s) | 482 |
| Eco47I | GGWCC | 1 cut(s) | 189 |
| Eco88I | CYCGRG | 1 cut(s) | 154 |
| EcoRII | CCWGG | 1 cut(s) | 450 |
| FaeI | CATG | 2 cut(s) | 97, 602 |
| FaiI | YATR | 4 cut(s) | 20, 95, 600, 653 |
| FaqI | GGGAC | 1 cut(s) | 637 |
| FatI | CATG | 2 cut(s) | 93, 598 |
| FauI | CCCGC | 1 cut(s) | 108 |
| FbaI | TGATCA | 1 cut(s) | 433 |
| Fnu4HI | GCNGC | 3 cut(s) | 30, 603, 606 |
| FokI | GGATG | 2 cut(s) | 76, 649 |
| Fsp4HI | GCNGC | 3 cut(s) | 30, 603, 606 |
| FspBI | CTAG | 5 cut(s) | 69, 74, 335, 428, 648 |
| GluI | GCNGC | 3 cut(s) | 30, 603, 606 |
| GsuI | CTGGAG | 1 cut(s) | 583 |
| HaeIII | GGCC | 4 cut(s) | 213, 282, 294, 608 |
| HapII | CCGG | 6 cut(s) | 107, 169, 210, 251, 279, 345 |
| HgaI | GACGC | 1 cut(s) | 281 |
| Hin1I | GRCGYC | 1 cut(s) | 273 |
| Hin1II | CATG | 2 cut(s) | 97, 602 |
| HinfI | GANTC | 2 cut(s) | 538, 693 |
| HpaII | CCGG | 6 cut(s) | 107, 169, 210, 251, 279, 345 |
| Hpy188I | TCNGA | 6 cut(s) | 165, 193, 271, 393, 469, 553 |
| Hpy188III | TCNNGA | 1 cut(s) | 136 |
| Hpy99I | CGWCG | 4 cut(s) | 197, 242, 275, 393 |
| HpyCH4III | ACNGT | 2 cut(s) | 287, 628 |
| HpyCH4V | TGCA | 3 cut(s) | 263, 406, 590 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 121, 210, 260, 602, 614, 667 |
| HpyF3I | CTNAG | 2 cut(s) | 51, 552 |
| Hsp92I | GRCGYC | 1 cut(s) | 273 |
| Hsp92II | CATG | 2 cut(s) | 97, 602 |
| Ksp22I | TGATCA | 1 cut(s) | 433 |
| Kzo9I | GATC | 3 cut(s) | 132, 424, 433 |
| LmnI | GCTCC | 1 cut(s) | 209 |
| Lsp1109I | GCAGC | 2 cut(s) | 16, 589 |
| MaeI | CTAG | 5 cut(s) | 69, 74, 335, 428, 648 |
| MalI | GATC | 3 cut(s) | 134, 426, 435 |
| MboI | GATC | 3 cut(s) | 132, 424, 433 |
| MboII | GAAGA | 6 cut(s) | 377, 499, 503, 533, 533, 626 |
| MluCI | AATT | 5 cut(s) | 339, 407, 462, 471, 525 |
| MlyI | GAGTC | 2 cut(s) | 547, 687 |
| MmeI | TCCRAC | 6 cut(s) | 188, 216, 294, 329, 371, 548 |
| MseI | TTAA | 3 cut(s) | 39, 681, 712 |
| MspCI | CTTAAG | 1 cut(s) | 680 |
| MspI | CCGG | 6 cut(s) | 107, 169, 210, 251, 279, 345 |
| MspR9I | CCNGG | 3 cut(s) | 107, 169, 452 |
| Mva1269I | GAATGC | 1 cut(s) | 592 |
| MvaI | CCWGG | 1 cut(s) | 452 |
| MvnI | CGCG | 2 cut(s) | 176, 182 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 121, 210, 260, 602, 614, 667 |
| NciI | CCSGG | 2 cut(s) | 107, 169 |
| NdeII | GATC | 3 cut(s) | 132, 424, 433 |
| NlaIII | CATG | 2 cut(s) | 97, 602 |
| NlaIV | GGNNCC | 1 cut(s) | 190 |
| PctI | GAATGC | 1 cut(s) | 592 |
| PflFI | GACNNNGTC | 1 cut(s) | 187 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 289 |
| PkrI | GCNGC | 3 cut(s) | 31, 604, 607 |
| PleI | GAGTC | 2 cut(s) | 546, 687 |
| PpsI | GAGTC | 2 cut(s) | 546, 687 |
| Psp6I | CCWGG | 1 cut(s) | 450 |
| PspGI | CCWGG | 1 cut(s) | 450 |
| PspN4I | GGNNCC | 1 cut(s) | 190 |
| PspPI | GGNCC | 2 cut(s) | 189, 292 |
| PstI | CTGCAG | 1 cut(s) | 265 |
| PsyI | GACNNNGTC | 1 cut(s) | 187 |
| SaqAI | TTAA | 3 cut(s) | 39, 681, 712 |
| SatI | GCNGC | 3 cut(s) | 30, 603, 606 |
| Sau3AI | GATC | 3 cut(s) | 132, 424, 433 |
| Sau96I | GGNCC | 2 cut(s) | 189, 292 |
| SchI | GAGTC | 2 cut(s) | 547, 687 |
| ScrFI | CCNGG | 3 cut(s) | 107, 169, 452 |
| SetI | ASST | 8 cut(s) | 31, 219, 237, 246, 317, 405, 417, 509 |
| SfcI | CTRYAG | 1 cut(s) | 261 |
| SinI | GGWCC | 1 cut(s) | 189 |
| SmlI | CTYRAG | 1 cut(s) | 680 |
| SmoI | CTYRAG | 1 cut(s) | 680 |
| Sse9I | AATT | 5 cut(s) | 339, 407, 462, 471, 525 |
| SsiI | CCGC | 6 cut(s) | 115, 180, 378, 594, 605, 659 |
| SspMI | CTAG | 5 cut(s) | 69, 74, 335, 428, 648 |
| StyD4I | CCNGG | 3 cut(s) | 105, 167, 450 |
| TaaI | ACNGT | 2 cut(s) | 287, 628 |
| TaqI | TCGA | 5 cut(s) | 135, 240, 411, 423, 611 |
| TasI | AATT | 5 cut(s) | 339, 407, 462, 471, 525 |
| TauI | GCSGC | 1 cut(s) | 608 |
| Tru1I | TTAA | 3 cut(s) | 39, 681, 712 |
| Tru9I | TTAA | 3 cut(s) | 39, 681, 712 |
| TseI | GCWGC | 2 cut(s) | 29, 602 |
| TspGWI | ACGGA | 2 cut(s) | 210, 239 |
| Tth111I | GACNNNGTC | 1 cut(s) | 187 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 289 |
| Vha464I | CTTAAG | 1 cut(s) | 680 |
| VpaK11BI | GGWCC | 1 cut(s) | 189 |
| XapI | RAATTY | 2 cut(s) | 339, 471 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 625 |
| XspI | CTAG | 5 cut(s) | 69, 74, 335, 428, 648 |