FvH4_3g29361

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000093
Physical Location & Seq
Forward (+)
22459684 .. 22460186
503 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29361.t1

Sequence Viewer

Length: 474 bp
ATGAAGGGAGGTGAGCCAAATCCTGCCATGGTTATTGATAATGTCAACAGGAGCTATGCACACTGGATGGAGGCCAAGTCTATTGAAGAGAATGATGAAAATGTGCTCTCAAACCAGGCTCGATGTGATTTGTGGTGTCCCCCTCTTCCTTATGAGTCCTCGGACCTCGCTAGTGGGATTGGTATCATTGTGAGGAACCATAGACGCTCTTCCATTGTTGGGGCAAGTCTACATGGCTCTCACAACTCAGCAATTGAGGTGGAGGTAGATGCTGCTCTTAGAGCCCTCCAACTTGTTGCCCACCTTCGTCTGCAGAATATAGTGATTGAAAGTGACTGTCAAGACATCATCAAGGCTTTAAACAGCTACCCTCTGACAACCAGCTGGAAAATCTCTCCCATTATCAGTAAGAGAATGCATCTAAAGCCAACGTTCAGAGTATATCTAAAGCCAATGTTCAGGGCATTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

158

Amino Acids

17.66

Weight (kDa)

8.49

Isoelectric Point (pI)

58.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 54 - 147 1.4e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 229
AclI AACGTT 1 cut(s) 431
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 2 cut(s) 86, 329
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 3 cut(s) 54, 366, 384
AluI AGCT 3 cut(s) 54, 366, 384
Alw21I GWGCWC 1 cut(s) 108
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 163
AsuHPI GGTGA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 259
BccI CCATC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 116
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 311
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 259, 427
BsaBI GATNNNNATC 1 cut(s) 182
BsaJI CCNNGG 2 cut(s) 27, 159
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 68
Bse8I GATNNNNATC 1 cut(s) 182
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 27, 159
BseGI GGATG 1 cut(s) 72
BseJI GATNNNNATC 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 259
BshFI GGCC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 108
BslFI GGGAC 1 cut(s) 123
BslI CCNNNNNNNGG 1 cut(s) 219
BsmFI GGGAC 1 cut(s) 123
BsmI GAATGC 1 cut(s) 420
BsnI GGCC 1 cut(s) 74
Bsp1286I GDGCHC 2 cut(s) 108, 286
Bsp19I CCATGG 1 cut(s) 27
BspANI GGCC 1 cut(s) 74
BspCNI CTCAG 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 197
BspMAI CTGCAG 1 cut(s) 315
BspQI GCTCTTC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 27, 159
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 338
Bst6I CTCTTC 3 cut(s) 81, 150, 214
BstDEI CTNAG 2 cut(s) 247, 278
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 72
BstMWI GCNNNNNNNGC 2 cut(s) 281, 424
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 259
BsuRI GGCC 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 1 cut(s) 72
BtsIMutI CAGTG 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 163
CseI GACGC 1 cut(s) 213
CspCI CAANNNNNGTGG 2 cut(s) 240, 275
CviAII CATG 2 cut(s) 28, 233
DdeI CTNAG 2 cut(s) 247, 278
DraI TTTAAA 1 cut(s) 360
Eam1104I CTCTTC 3 cut(s) 81, 150, 214
EarI CTCTTC 3 cut(s) 81, 150, 214
Eco130I CCWWGG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 27
EcoT22I ATGCAT 1 cut(s) 420
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 2 cut(s) 31, 236
FaiI YATR 7 cut(s) 29, 57, 153, 201, 234, 320, 442
FaqI GGGAC 1 cut(s) 123
FatI CATG 2 cut(s) 27, 232
FblI GTMKAC 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 79
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 171
GluI GCNGC 1 cut(s) 273
HaeIII GGCC 1 cut(s) 74
HgaI GACGC 1 cut(s) 213
Hin1II CATG 2 cut(s) 31, 236
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 1 cut(s) 155
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 46, 230
Hpy188I TCNGA 3 cut(s) 163, 375, 437
Hpy188III TCNNGA 1 cut(s) 341
Hpy8I GTNNAC 2 cut(s) 46, 230
HpyAV CCTTC 1 cut(s) 314
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 3 cut(s) 59, 313, 418
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 424
HpyF3I CTNAG 2 cut(s) 247, 278
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 2 cut(s) 31, 236
LguI GCTCTTC 1 cut(s) 214
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 8 cut(s) 34, 36, 49, 101, 128, 370, 394, 445
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 2 cut(s) 259, 427
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 1 cut(s) 332
MboII GAAGA 3 cut(s) 98, 137, 201
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 2 cut(s) 108, 286
MluCI AATT 1 cut(s) 252
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 313
MnlI CCTC 9 cut(s) 64, 153, 169, 176, 186, 250, 256, 296, 381
Mph1103I ATGCAT 1 cut(s) 420
MseI TTAA 1 cut(s) 359
MslI CAYNNNNRTG 1 cut(s) 469
MspA1I CMGCKG 1 cut(s) 384
MspR9I CCNGG 1 cut(s) 116
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 420
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 281, 424
NcoI CCATGG 1 cut(s) 27
NlaIII CATG 2 cut(s) 31, 236
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 332
NsiI ATGCAT 1 cut(s) 420
PciSI GCTCTTC 1 cut(s) 214
PctI GAATGC 1 cut(s) 420
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 1 cut(s) 163
PpsI GAGTC 1 cut(s) 163
Psp1406I AACGTT 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 163
PstI CTGCAG 1 cut(s) 315
PvuII CAGCTG 1 cut(s) 384
RseI CAYNNNNRTG 1 cut(s) 469
SapI GCTCTTC 1 cut(s) 214
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 1 cut(s) 273
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 2 cut(s) 108, 286
SetI ASST 9 cut(s) 13, 56, 168, 261, 267, 306, 368, 386, 434
SfaNI GCATC 2 cut(s) 259, 427
SfcI CTRYAG 1 cut(s) 311
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 469
Sse9I AATT 1 cut(s) 252
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 1 cut(s) 434
TaqI TCGA 1 cut(s) 121
TasI AATT 1 cut(s) 252
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 1 cut(s) 68
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 2 cut(s) 17, 111
TspRI CASTG 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 163
XmiI GTMKAC 1 cut(s) 229
XspI CTAG 1 cut(s) 171
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.