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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 38 |
| AccB1I | GGYRCC | 1 cut(s) | 19 |
| AccBSI | CCGCTC | 1 cut(s) | 349 |
| AccII | CGCG | 1 cut(s) | 89 |
| AciI | CCGC | 3 cut(s) | 87, 216, 349 |
| AfaI | GTAC | 1 cut(s) | 333 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 222, 295 |
| AflIII | ACRYGT | 1 cut(s) | 334 |
| AgsI | TTSAA | 1 cut(s) | 96 |
| AjnI | CCWGG | 2 cut(s) | 288, 327 |
| AluBI | AGCT | 2 cut(s) | 101, 164 |
| AluI | AGCT | 2 cut(s) | 101, 164 |
| Alw21I | GWGCWC | 1 cut(s) | 166 |
| Ama87I | CYCGRG | 1 cut(s) | 194 |
| AoxI | GGCC | 1 cut(s) | 133 |
| AseI | ATTAAT | 1 cut(s) | 12 |
| AspS9I | GGNCC | 2 cut(s) | 73, 134 |
| AvaI | CYCGRG | 1 cut(s) | 194 |
| AvaII | GGWCC | 1 cut(s) | 73 |
| BanI | GGYRCC | 1 cut(s) | 19 |
| BanII | GRGCYC | 2 cut(s) | 166, 296 |
| BauI | CACGAG | 2 cut(s) | 153, 171 |
| BbsI | GAAGAC | 2 cut(s) | 84, 295 |
| Bbv12I | GWGCWC | 1 cut(s) | 166 |
| BccI | CCATC | 1 cut(s) | 302 |
| BceAI | ACGGC | 1 cut(s) | 129 |
| BciT130I | CCWGG | 2 cut(s) | 290, 329 |
| BglII | AGATCT | 1 cut(s) | 125 |
| Bme1390I | CCNGG | 2 cut(s) | 290, 329 |
| Bme18I | GGWCC | 1 cut(s) | 73 |
| BmeT110I | CYCGRG | 1 cut(s) | 194 |
| BmgT120I | GGNCC | 2 cut(s) | 73, 134 |
| BmiI | GGNNCC | 3 cut(s) | 21, 143, 379 |
| BmrFI | CCNGG | 2 cut(s) | 290, 329 |
| BmsI | GCATC | 1 cut(s) | 166 |
| BpiI | GAAGAC | 2 cut(s) | 84, 295 |
| BpmI | CTGGAG | 1 cut(s) | 272 |
| BpuEI | CTTGAG | 1 cut(s) | 114 |
| BsaAI | YACGTR | 1 cut(s) | 335 |
| BsaJI | CCNNGG | 2 cut(s) | 137, 289 |
| BsaWI | WCCGGW | 1 cut(s) | 355 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 222, 295 |
| Bse1I | ACTGG | 2 cut(s) | 23, 243 |
| BseBI | CCWGG | 2 cut(s) | 290, 329 |
| BseDI | CCNNGG | 2 cut(s) | 137, 289 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 222, 295 |
| BseNI | ACTGG | 2 cut(s) | 23, 243 |
| Bsh1236I | CGCG | 1 cut(s) | 89 |
| Bsh1285I | CGRYCG | 1 cut(s) | 300 |
| BshFI | GGCC | 1 cut(s) | 135 |
| BshNI | GGYRCC | 1 cut(s) | 19 |
| BsiEI | CGRYCG | 1 cut(s) | 300 |
| BsiHKAI | GWGCWC | 1 cut(s) | 166 |
| BsiHKCI | CYCGRG | 1 cut(s) | 194 |
| BsiSI | CCGG | 1 cut(s) | 356 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 222, 295 |
| BsnI | GGCC | 1 cut(s) | 135 |
| BsoBI | CYCGRG | 1 cut(s) | 194 |
| Bsp1286I | GDGCHC | 2 cut(s) | 166, 296 |
| Bsp143I | GATC | 2 cut(s) | 117, 125 |
| BspACI | CCGC | 3 cut(s) | 87, 216, 349 |
| BspANI | GGCC | 1 cut(s) | 135 |
| BspFNI | CGCG | 1 cut(s) | 89 |
| BspLI | GGNNCC | 3 cut(s) | 21, 143, 379 |
| BspT107I | GGYRCC | 1 cut(s) | 19 |
| BsrBI | CCGCTC | 1 cut(s) | 349 |
| BsrI | ACTGG | 2 cut(s) | 23, 243 |
| BssECI | CCNNGG | 2 cut(s) | 137, 289 |
| BssMI | GATC | 2 cut(s) | 117, 125 |
| BssSI | CACGAG | 2 cut(s) | 153, 171 |
| Bst2BI | CACGAG | 2 cut(s) | 153, 171 |
| Bst2UI | CCWGG | 2 cut(s) | 290, 329 |
| BstBAI | YACGTR | 1 cut(s) | 335 |
| BstEII | GGTNACC | 1 cut(s) | 351 |
| BstFNI | CGCG | 1 cut(s) | 89 |
| BstKTI | GATC | 2 cut(s) | 120, 128 |
| BstMBI | GATC | 2 cut(s) | 117, 125 |
| BstMCI | CGRYCG | 1 cut(s) | 300 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 26 |
| BstNI | CCWGG | 2 cut(s) | 290, 329 |
| BstPI | GGTNACC | 1 cut(s) | 351 |
| BstSCI | CCNGG | 2 cut(s) | 288, 327 |
| BstUI | CGCG | 1 cut(s) | 89 |
| BstV2I | GAAGAC | 2 cut(s) | 84, 295 |
| BstX2I | RGATCY | 1 cut(s) | 125 |
| BstYI | RGATCY | 1 cut(s) | 125 |
| BsuRI | GGCC | 1 cut(s) | 135 |
| BtsIMutI | CAGTG | 1 cut(s) | 236 |
| Cfr13I | GGNCC | 2 cut(s) | 73, 134 |
| CseI | GACGC | 1 cut(s) | 78 |
| CsiI | ACCWGGT | 1 cut(s) | 327 |
| Csp6I | GTAC | 1 cut(s) | 332 |
| CviJI | RGCY | 5 cut(s) | 101, 135, 142, 164, 294 |
| CviKI_1 | RGCY | 5 cut(s) | 101, 135, 142, 164, 294 |
| CviQI | GTAC | 1 cut(s) | 332 |
| DpnI | GATC | 2 cut(s) | 119, 127 |
| DpnII | GATC | 2 cut(s) | 117, 125 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 38 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 38 |
| Ecl136II | GAGCTC | 1 cut(s) | 164 |
| Eco24I | GRGCYC | 2 cut(s) | 166, 296 |
| Eco47I | GGWCC | 1 cut(s) | 73 |
| Eco53kI | GAGCTC | 1 cut(s) | 164 |
| Eco88I | CYCGRG | 1 cut(s) | 194 |
| Eco91I | GGTNACC | 1 cut(s) | 351 |
| EcoICRI | GAGCTC | 1 cut(s) | 164 |
| EcoO109I | RGGNCCY | 1 cut(s) | 134 |
| EcoO65I | GGTNACC | 1 cut(s) | 351 |
| EcoRII | CCWGG | 2 cut(s) | 288, 327 |
| EcoT38I | GRGCYC | 2 cut(s) | 166, 296 |
| FaiI | YATR | 3 cut(s) | 185, 248, 315 |
| FriOI | GRGCYC | 2 cut(s) | 166, 296 |
| GsuI | CTGGAG | 1 cut(s) | 272 |
| HaeIII | GGCC | 1 cut(s) | 135 |
| HapII | CCGG | 1 cut(s) | 356 |
| HgaI | GACGC | 1 cut(s) | 78 |
| HinfI | GANTC | 2 cut(s) | 32, 106 |
| HpaII | CCGG | 1 cut(s) | 356 |
| Hpy166II | GTNNAC | 3 cut(s) | 56, 76, 152 |
| Hpy188I | TCNGA | 1 cut(s) | 208 |
| Hpy188III | TCNNGA | 4 cut(s) | 53, 96, 173, 196 |
| Hpy8I | GTNNAC | 3 cut(s) | 56, 76, 152 |
| Hpy99I | CGWCG | 2 cut(s) | 54, 71 |
| HpyCH4IV | ACGT | 2 cut(s) | 148, 334 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 26 |
| HpySE526I | ACGT | 2 cut(s) | 148, 334 |
| Kzo9I | GATC | 2 cut(s) | 117, 125 |
| LmnI | GCTCC | 2 cut(s) | 147, 169 |
| LpnPI | CCDG | 8 cut(s) | 2, 36, 224, 275, 302, 314, 341, 369 |
| LweI | GCATC | 1 cut(s) | 166 |
| MabI | ACCWGGT | 1 cut(s) | 327 |
| MaeII | ACGT | 2 cut(s) | 148, 334 |
| MaeIII | GTNAC | 3 cut(s) | 232, 337, 351 |
| MalI | GATC | 2 cut(s) | 119, 127 |
| MbiI | CCGCTC | 1 cut(s) | 349 |
| MboI | GATC | 2 cut(s) | 117, 125 |
| MboII | GAAGA | 3 cut(s) | 84, 295, 355 |
| MflI | RGATCY | 1 cut(s) | 125 |
| MhlI | GDGCHC | 2 cut(s) | 166, 296 |
| MluCI | AATT | 2 cut(s) | 9, 322 |
| MlyI | GAGTC | 2 cut(s) | 26, 100 |
| MmeI | TCCRAC | 3 cut(s) | 134, 169, 191 |
| MnlI | CCTC | 4 cut(s) | 64, 147, 149, 296 |
| MseI | TTAA | 3 cut(s) | 12, 212, 368 |
| MspA1I | CMGCKG | 1 cut(s) | 218 |
| MspI | CCGG | 1 cut(s) | 356 |
| MspR9I | CCNGG | 2 cut(s) | 290, 329 |
| MvaI | CCWGG | 2 cut(s) | 290, 329 |
| MvnI | CGCG | 1 cut(s) | 89 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 26 |
| NdeII | GATC | 2 cut(s) | 117, 125 |
| NlaIV | GGNNCC | 3 cut(s) | 21, 143, 379 |
| NmeAIII | GCCGAG | 1 cut(s) | 118 |
| NmuCI | GTSAC | 1 cut(s) | 337 |
| PaeR7I | CTCGAG | 1 cut(s) | 194 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 145 |
| PflFI | GACNNNGTC | 1 cut(s) | 71 |
| PleI | GAGTC | 2 cut(s) | 26, 100 |
| PpsI | GAGTC | 2 cut(s) | 26, 100 |
| Ppu21I | YACGTR | 1 cut(s) | 335 |
| PshBI | ATTAAT | 1 cut(s) | 12 |
| Psp124BI | GAGCTC | 1 cut(s) | 166 |
| Psp6I | CCWGG | 2 cut(s) | 288, 327 |
| PspEI | GGTNACC | 1 cut(s) | 351 |
| PspGI | CCWGG | 2 cut(s) | 288, 327 |
| PspN4I | GGNNCC | 3 cut(s) | 21, 143, 379 |
| PspPI | GGNCC | 2 cut(s) | 73, 134 |
| PsuI | RGATCY | 1 cut(s) | 125 |
| PsyI | GACNNNGTC | 1 cut(s) | 71 |
| RsaI | GTAC | 1 cut(s) | 333 |
| RsaNI | GTAC | 1 cut(s) | 332 |
| SacI | GAGCTC | 1 cut(s) | 166 |
| SaqAI | TTAA | 3 cut(s) | 12, 212, 368 |
| Sau3AI | GATC | 2 cut(s) | 117, 125 |
| Sau96I | GGNCC | 2 cut(s) | 73, 134 |
| SchI | GAGTC | 2 cut(s) | 26, 100 |
| ScrFI | CCNGG | 2 cut(s) | 290, 329 |
| SduI | GDGCHC | 2 cut(s) | 166, 296 |
| SetI | ASST | 8 cut(s) | 75, 103, 151, 166, 288, 330, 337, 383 |
| SexAI | ACCWGGT | 1 cut(s) | 327 |
| SfaNI | GCATC | 1 cut(s) | 166 |
| Sfr274I | CTCGAG | 1 cut(s) | 194 |
| SinI | GGWCC | 1 cut(s) | 73 |
| SlaI | CTCGAG | 1 cut(s) | 194 |
| SmlI | CTYRAG | 2 cut(s) | 129, 194 |
| SmoI | CTYRAG | 2 cut(s) | 129, 194 |
| Sse9I | AATT | 2 cut(s) | 9, 322 |
| SsiI | CCGC | 3 cut(s) | 87, 216, 349 |
| SstI | GAGCTC | 1 cut(s) | 166 |
| StyD4I | CCNGG | 2 cut(s) | 288, 327 |
| TaiI | ACGT | 2 cut(s) | 151, 337 |
| TaqI | TCGA | 5 cut(s) | 66, 104, 195, 267, 306 |
| TaqII | GACCGA | 1 cut(s) | 286 |
| TasI | AATT | 2 cut(s) | 9, 322 |
| Tru1I | TTAA | 3 cut(s) | 12, 212, 368 |
| Tru9I | TTAA | 3 cut(s) | 12, 212, 368 |
| TscAI | CASTG | 1 cut(s) | 243 |
| TseFI | GTSAC | 1 cut(s) | 337 |
| Tsp45I | GTSAC | 1 cut(s) | 337 |
| TspRI | CASTG | 1 cut(s) | 243 |
| Tth111I | GACNNNGTC | 1 cut(s) | 71 |
| VpaK11BI | GGWCC | 1 cut(s) | 73 |
| VspI | ATTAAT | 1 cut(s) | 12 |
| XhoI | CTCGAG | 1 cut(s) | 194 |