RchiOBHm_Chr3g0490691

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000093
Physical Location & Seq
Reverse (-)
37355267 .. 37355686
420 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45379

Sequence Viewer

Length: 420 bp
ATGGATGCGGCCTGGGATGCGGATTTAAACTCTTGTGGACTGACAATAGTGATACGTGATCCATCTAGAGTCATAGTGGGGGGCTCCTCCAGGTTCGATTTTACTTCTTCTCCATTGGCTACTGAAGCTCTAGCAATCGAGCTTGGCCTCAACGCAGCCTCTTCCCTCTCCCTCTCTTCTCTTCATCTGGAATCTGACTCCTTGACTCTCATTTCAGCTCTACAAAACCCCCTCTCAACAGTGGACTGGACGGCTGCTCAGATTGTTACTCGCATTCGAGCTCTTGCCTGCCGTTTCATCGTGTTAACTGGCGTTGGGTCACTAGAAAAGCCAATGTTGCTGCTGATCATCTGGTGGCTTCCATGGCTTTACGTAGGGTGTGTCCTGTTGATTGGTGCTCCAATCCTCCCCCCTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

139

Amino Acids

14.86

Weight (kDa)

4.65

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 99 7.3e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 8, 20
AclWI GGATC 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 144
AjnI CCWGG 2 cut(s) 11, 89
AluBI AGCT 4 cut(s) 128, 142, 218, 281
AluI AGCT 4 cut(s) 128, 142, 218, 281
Alw21I GWGCWC 2 cut(s) 283, 400
AlwI GGATC 1 cut(s) 53
AoxI GGCC 2 cut(s) 9, 145
ApeKI GCWGC 3 cut(s) 155, 254, 340
BanII GRGCYC 2 cut(s) 86, 283
Bbv12I GWGCWC 2 cut(s) 283, 400
BbvI GCAGC 3 cut(s) 167, 241, 327
BccI CCATC 1 cut(s) 70
BceAI ACGGC 2 cut(s) 267, 276
BciT130I CCWGG 2 cut(s) 13, 91
BclI TGATCA 1 cut(s) 345
BfaI CTAG 3 cut(s) 66, 131, 323
BisI GCNGC 4 cut(s) 9, 156, 255, 341
BlsI GCNGC 4 cut(s) 10, 157, 256, 342
Bme1390I CCNGG 2 cut(s) 13, 91
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 2 cut(s) 13, 91
BmsI GCATC 1 cut(s) 7
BpmI CTGGAG 1 cut(s) 73
BsaAI YACGTR 2 cut(s) 56, 373
BsaJI CCNNGG 2 cut(s) 12, 362
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bse1I ACTGG 2 cut(s) 251, 313
BseBI CCWGG 2 cut(s) 13, 91
BseDI CCNNGG 2 cut(s) 12, 362
BseGI GGATG 2 cut(s) 10, 22
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 2 cut(s) 251, 313
BseRI GAGGAG 1 cut(s) 76
BseXI GCAGC 3 cut(s) 167, 241, 327
BshFI GGCC 2 cut(s) 11, 147
BsiHKAI GWGCWC 2 cut(s) 283, 400
BsmI GAATGC 1 cut(s) 273
BsnI GGCC 2 cut(s) 11, 147
Bsp1286I GDGCHC 3 cut(s) 86, 283, 400
Bsp143I GATC 2 cut(s) 58, 345
Bsp19I CCATGG 1 cut(s) 362
BspACI CCGC 2 cut(s) 8, 20
BspANI GGCC 2 cut(s) 11, 147
BspCNI CTCAG 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 1 cut(s) 53
BsrI ACTGG 2 cut(s) 251, 313
BssECI CCNNGG 2 cut(s) 12, 362
BssMI GATC 2 cut(s) 58, 345
BssT1I CCWWGG 1 cut(s) 362
Bst2UI CCWGG 2 cut(s) 13, 91
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 3 cut(s) 166, 181, 186
BstBAI YACGTR 2 cut(s) 56, 373
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 258
BstDSI CCRYGG 1 cut(s) 362
BstF5I GGATG 2 cut(s) 10, 22
BstKTI GATC 2 cut(s) 61, 348
BstMBI GATC 2 cut(s) 58, 345
BstMWI GCNNNNNNNGC 4 cut(s) 17, 125, 337, 364
BstNI CCWGG 2 cut(s) 13, 91
BstSCI CCNGG 2 cut(s) 11, 89
BstSNI TACGTA 1 cut(s) 373
BstV1I GCAGC 3 cut(s) 167, 241, 327
BsuRI GGCC 2 cut(s) 11, 147
BtgI CCRYGG 1 cut(s) 362
BtsCI GGATG 2 cut(s) 10, 22
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 289
CviAII CATG 1 cut(s) 363
DdeI CTNAG 1 cut(s) 258
DpnI GATC 2 cut(s) 60, 347
DpnII GATC 2 cut(s) 58, 345
DraI TTTAAA 1 cut(s) 27
Eam1104I CTCTTC 3 cut(s) 166, 181, 186
EarI CTCTTC 3 cut(s) 166, 181, 186
Ecl136II GAGCTC 1 cut(s) 281
Eco105I TACGTA 1 cut(s) 373
Eco130I CCWWGG 1 cut(s) 362
Eco24I GRGCYC 2 cut(s) 86, 283
Eco53kI GAGCTC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 144
EcoICRI GAGCTC 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 11, 89
EcoT14I CCWWGG 1 cut(s) 362
EcoT38I GRGCYC 2 cut(s) 86, 283
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 1 cut(s) 366
FaiI YATR 2 cut(s) 74, 364
FatI CATG 1 cut(s) 362
FbaI TGATCA 1 cut(s) 345
Fnu4HI GCNGC 4 cut(s) 9, 156, 255, 341
FokI GGATG 2 cut(s) 17, 29
FriOI GRGCYC 2 cut(s) 86, 283
Fsp4HI GCNGC 4 cut(s) 9, 156, 255, 341
FspBI CTAG 3 cut(s) 66, 131, 323
GluI GCNGC 4 cut(s) 9, 156, 255, 341
GsuI CTGGAG 1 cut(s) 73
HaeIII GGCC 2 cut(s) 11, 147
Hin1II CATG 1 cut(s) 366
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 4 cut(s) 69, 191, 197, 205
HpaI GTTAAC 1 cut(s) 306
Hpy166II GTNNAC 3 cut(s) 38, 244, 306
Hpy188I TCNGA 2 cut(s) 196, 261
Hpy188III TCNNGA 2 cut(s) 66, 188
Hpy8I GTNNAC 3 cut(s) 38, 244, 306
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 2 cut(s) 55, 372
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 125, 337, 364
HpyF3I CTNAG 1 cut(s) 258
HpySE526I ACGT 2 cut(s) 55, 372
Hsp92II CATG 1 cut(s) 366
Ksp22I TGATCA 1 cut(s) 345
KspAI GTTAAC 1 cut(s) 306
Kzo9I GATC 2 cut(s) 58, 345
LmnI GCTCC 2 cut(s) 89, 403
LpnPI CCDG 9 cut(s) 25, 76, 103, 173, 232, 294, 301, 337, 398
Lsp1109I GCAGC 3 cut(s) 167, 241, 327
LweI GCATC 1 cut(s) 7
MaeI CTAG 3 cut(s) 66, 131, 323
MaeII ACGT 2 cut(s) 55, 372
MaeIII GTNAC 2 cut(s) 265, 318
MalI GATC 2 cut(s) 60, 347
MboI GATC 2 cut(s) 58, 345
MboII GAAGA 4 cut(s) 99, 153, 168, 173
MhlI GDGCHC 3 cut(s) 86, 283, 400
MlyI GAGTC 3 cut(s) 78, 191, 199
MnlI CCTC 7 cut(s) 97, 158, 169, 176, 182, 242, 416
MseI TTAA 2 cut(s) 26, 305
MspR9I CCNGG 2 cut(s) 13, 91
Mva1269I GAATGC 1 cut(s) 273
MvaI CCWGG 2 cut(s) 13, 91
MwoI GCNNNNNNNGC 4 cut(s) 17, 125, 337, 364
NcoI CCATGG 1 cut(s) 362
NdeII GATC 2 cut(s) 58, 345
NlaIII CATG 1 cut(s) 366
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 318
PctI GAATGC 1 cut(s) 273
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 4 cut(s) 10, 157, 256, 342
PleI GAGTC 3 cut(s) 77, 191, 199
PpsI GAGTC 3 cut(s) 77, 191, 199
Ppu21I YACGTR 2 cut(s) 56, 373
Psp124BI GAGCTC 1 cut(s) 283
Psp6I CCWGG 2 cut(s) 11, 89
PspGI CCWGG 2 cut(s) 11, 89
PspN4I GGNNCC 1 cut(s) 85
SacI GAGCTC 1 cut(s) 283
SaqAI TTAA 2 cut(s) 26, 305
SatI GCNGC 4 cut(s) 9, 156, 255, 341
Sau3AI GATC 2 cut(s) 58, 345
SchI GAGTC 3 cut(s) 78, 191, 199
ScrFI CCNGG 2 cut(s) 13, 91
SduI GDGCHC 3 cut(s) 86, 283, 400
SetI ASST 7 cut(s) 58, 95, 130, 144, 220, 283, 375
SfaNI GCATC 1 cut(s) 7
SnaBI TACGTA 1 cut(s) 373
SsiI CCGC 2 cut(s) 8, 20
SspMI CTAG 3 cut(s) 66, 131, 323
SstI GAGCTC 1 cut(s) 283
StyD4I CCNGG 2 cut(s) 11, 89
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 2 cut(s) 58, 375
TaqI TCGA 3 cut(s) 96, 138, 277
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 26, 305
Tru9I TTAA 2 cut(s) 26, 305
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 318
TseI GCWGC 3 cut(s) 155, 254, 340
Tsp45I GTSAC 1 cut(s) 318
TspDTI ATGAA 2 cut(s) 173, 286
TspRI CASTG 1 cut(s) 246
XbaI TCTAGA 1 cut(s) 65
XspI CTAG 3 cut(s) 66, 131, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.