ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 996 |
| AcoI | YGGCCR | 2 cut(s) | 428, 445 |
| AcsI | RAATTY | 2 cut(s) | 303, 580 |
| AcuI | CTGAAG | 1 cut(s) | 1077 |
| AfaI | GTAC | 1 cut(s) | 676 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 671 |
| AgsI | TTSAA | 3 cut(s) | 289, 695, 823 |
| AleI | CACNNNNGTG | 1 cut(s) | 363 |
| AluBI | AGCT | 2 cut(s) | 959, 1097 |
| AluI | AGCT | 2 cut(s) | 959, 1097 |
| Alw21I | GWGCWC | 1 cut(s) | 214 |
| Alw26I | GTCTC | 2 cut(s) | 680, 993 |
| AlwI | GGATC | 1 cut(s) | 996 |
| AoxI | GGCC | 2 cut(s) | 428, 445 |
| ApeKI | GCWGC | 2 cut(s) | 608, 1073 |
| ApoI | RAATTY | 2 cut(s) | 303, 580 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 971, 1003 |
| AspS9I | GGNCC | 2 cut(s) | 1032, 1080 |
| AsuHPI | GGTGA | 4 cut(s) | 350, 410, 422, 925 |
| AsuII | TTCGAA | 1 cut(s) | 634 |
| AvaII | GGWCC | 2 cut(s) | 1032, 1080 |
| BalI | TGGCCA | 2 cut(s) | 430, 447 |
| BanII | GRGCYC | 3 cut(s) | 499, 529, 756 |
| BbsI | GAAGAC | 2 cut(s) | 113, 890 |
| Bbv12I | GWGCWC | 1 cut(s) | 214 |
| BbvI | GCAGC | 2 cut(s) | 620, 1085 |
| BccI | CCATC | 4 cut(s) | 188, 395, 1013, 1023 |
| BclI | TGATCA | 3 cut(s) | 3, 787, 855 |
| BcoDI | GTCTC | 2 cut(s) | 680, 993 |
| BfaI | CTAG | 5 cut(s) | 21, 60, 830, 1017, 1105 |
| BfmI | CTRYAG | 1 cut(s) | 347 |
| BisI | GCNGC | 2 cut(s) | 609, 1074 |
| BlsI | GCNGC | 2 cut(s) | 610, 1075 |
| Bme18I | GGWCC | 2 cut(s) | 1032, 1080 |
| BmgT120I | GGNCC | 2 cut(s) | 1032, 1080 |
| BmiI | GGNNCC | 2 cut(s) | 1034, 1082 |
| BmsI | GCATC | 2 cut(s) | 881, 1060 |
| BpiI | GAAGAC | 2 cut(s) | 113, 890 |
| Bpu14I | TTCGAA | 1 cut(s) | 634 |
| BpuEI | CTTGAG | 1 cut(s) | 488 |
| BsaJI | CCNNGG | 3 cut(s) | 431, 618, 716 |
| BsaWI | WCCGGW | 2 cut(s) | 183, 944 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 671 |
| BseDI | CCNNGG | 3 cut(s) | 431, 618, 716 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 671 |
| BseMII | CTCAG | 1 cut(s) | 769 |
| BseRI | GAGGAG | 3 cut(s) | 1029, 1032, 1035 |
| BseXI | GCAGC | 2 cut(s) | 620, 1085 |
| BshFI | GGCC | 2 cut(s) | 430, 447 |
| BsiHKAI | GWGCWC | 1 cut(s) | 214 |
| BsiSI | CCGG | 3 cut(s) | 184, 266, 945 |
| BslFI | GGGAC | 2 cut(s) | 1018, 1066 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 671 |
| BsmAI | GTCTC | 2 cut(s) | 680, 993 |
| BsmFI | GGGAC | 2 cut(s) | 1018, 1066 |
| BsnI | GGCC | 2 cut(s) | 430, 447 |
| Bsp119I | TTCGAA | 1 cut(s) | 634 |
| Bsp1286I | GDGCHC | 4 cut(s) | 214, 499, 529, 756 |
| Bsp143I | GATC | 7 cut(s) | 3, 140, 573, 787, 842, 855, 1001 |
| Bsp19I | CCATGG | 3 cut(s) | 431, 618, 716 |
| BspANI | GGCC | 2 cut(s) | 430, 447 |
| BspCNI | CTCAG | 1 cut(s) | 768 |
| BspLI | GGNNCC | 2 cut(s) | 1034, 1082 |
| BspMAI | CTGCAG | 1 cut(s) | 351 |
| BspPI | GGATC | 1 cut(s) | 996 |
| BspQI | GCTCTTC | 2 cut(s) | 504, 534 |
| BspT104I | TTCGAA | 1 cut(s) | 634 |
| BssECI | CCNNGG | 3 cut(s) | 431, 618, 716 |
| BssMI | GATC | 7 cut(s) | 3, 140, 573, 787, 842, 855, 1001 |
| BssT1I | CCWWGG | 3 cut(s) | 431, 618, 716 |
| Bst4CI | ACNGT | 1 cut(s) | 819 |
| Bst6I | CTCTTC | 5 cut(s) | 504, 534, 678, 833, 1018 |
| BstBI | TTCGAA | 1 cut(s) | 634 |
| BstC8I | GCNNGC | 2 cut(s) | 440, 1023 |
| BstDEI | CTNAG | 2 cut(s) | 362, 755 |
| BstDSI | CCRYGG | 3 cut(s) | 431, 618, 716 |
| BstKTI | GATC | 7 cut(s) | 6, 143, 576, 790, 845, 858, 1004 |
| BstMAI | GTCTC | 2 cut(s) | 680, 993 |
| BstMBI | GATC | 7 cut(s) | 3, 140, 573, 787, 842, 855, 1001 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 266, 444 |
| BstNSI | RCATGY | 1 cut(s) | 803 |
| BstSFI | CTRYAG | 1 cut(s) | 347 |
| BstV1I | GCAGC | 2 cut(s) | 620, 1085 |
| BstV2I | GAAGAC | 2 cut(s) | 113, 890 |
| BstX2I | RGATCY | 1 cut(s) | 1001 |
| BstYI | RGATCY | 1 cut(s) | 1001 |
| BsuRI | GGCC | 2 cut(s) | 430, 447 |
| BtgI | CCRYGG | 3 cut(s) | 431, 618, 716 |
| BtgZI | GCGATG | 1 cut(s) | 1083 |
| Cac8I | GCNNGC | 2 cut(s) | 440, 1023 |
| Cfr13I | GGNCC | 2 cut(s) | 1032, 1080 |
| Csp6I | GTAC | 1 cut(s) | 675 |
| CviAII | CATG | 6 cut(s) | 432, 443, 619, 717, 800, 1077 |
| CviQI | GTAC | 1 cut(s) | 675 |
| DdeI | CTNAG | 2 cut(s) | 362, 755 |
| DpnI | GATC | 7 cut(s) | 5, 142, 575, 789, 844, 857, 1003 |
| DpnII | GATC | 7 cut(s) | 3, 140, 573, 787, 842, 855, 1001 |
| EaeI | YGGCCR | 2 cut(s) | 428, 445 |
| Eam1104I | CTCTTC | 5 cut(s) | 504, 534, 678, 833, 1018 |
| EarI | CTCTTC | 5 cut(s) | 504, 534, 678, 833, 1018 |
| Eco130I | CCWWGG | 3 cut(s) | 431, 618, 716 |
| Eco24I | GRGCYC | 3 cut(s) | 499, 529, 756 |
| Eco47I | GGWCC | 2 cut(s) | 1032, 1080 |
| Eco57I | CTGAAG | 1 cut(s) | 1077 |
| EcoT14I | CCWWGG | 3 cut(s) | 431, 618, 716 |
| EcoT38I | GRGCYC | 3 cut(s) | 499, 529, 756 |
| ErhI | CCWWGG | 3 cut(s) | 431, 618, 716 |
| FaeI | CATG | 6 cut(s) | 435, 446, 622, 720, 803, 1080 |
| FaqI | GGGAC | 2 cut(s) | 1018, 1066 |
| FatI | CATG | 6 cut(s) | 431, 442, 618, 716, 799, 1076 |
| FauNDI | CATATG | 1 cut(s) | 668 |
| FbaI | TGATCA | 3 cut(s) | 3, 787, 855 |
| Fnu4HI | GCNGC | 2 cut(s) | 609, 1074 |
| FriOI | GRGCYC | 3 cut(s) | 499, 529, 756 |
| Fsp4HI | GCNGC | 2 cut(s) | 609, 1074 |
| FspBI | CTAG | 5 cut(s) | 21, 60, 830, 1017, 1105 |
| GluI | GCNGC | 2 cut(s) | 609, 1074 |
| HaeIII | GGCC | 2 cut(s) | 430, 447 |
| HapII | CCGG | 3 cut(s) | 184, 266, 945 |
| Hin1II | CATG | 6 cut(s) | 435, 446, 622, 720, 803, 1080 |
| HincII | GTYRAC | 1 cut(s) | 181 |
| HindII | GTYRAC | 1 cut(s) | 181 |
| HinfI | GANTC | 3 cut(s) | 118, 202, 1101 |
| HpaI | GTTAAC | 1 cut(s) | 181 |
| HpaII | CCGG | 3 cut(s) | 184, 266, 945 |
| HphI | GGTGA | 4 cut(s) | 350, 410, 422, 925 |
| Hpy166II | GTNNAC | 7 cut(s) | 28, 74, 163, 181, 358, 480, 904 |
| Hpy188I | TCNGA | 2 cut(s) | 105, 758 |
| Hpy188III | TCNNGA | 3 cut(s) | 80, 577, 880 |
| Hpy8I | GTNNAC | 7 cut(s) | 28, 74, 163, 181, 358, 480, 904 |
| HpyAV | CCTTC | 3 cut(s) | 401, 930, 1098 |
| HpyCH4III | ACNGT | 1 cut(s) | 819 |
| HpyCH4V | TGCA | 4 cut(s) | 349, 373, 952, 1073 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 266, 444 |
| HpyF3I | CTNAG | 2 cut(s) | 362, 755 |
| Hsp92II | CATG | 6 cut(s) | 435, 446, 622, 720, 803, 1080 |
| Ksp22I | TGATCA | 3 cut(s) | 3, 787, 855 |
| KspAI | GTTAAC | 1 cut(s) | 181 |
| Kzo9I | GATC | 7 cut(s) | 3, 140, 573, 787, 842, 855, 1001 |
| LguI | GCTCTTC | 2 cut(s) | 504, 534 |
| LmnI | GCTCC | 1 cut(s) | 435 |
| Lsp1109I | GCAGC | 2 cut(s) | 620, 1085 |
| LweI | GCATC | 2 cut(s) | 881, 1060 |
| MaeI | CTAG | 5 cut(s) | 21, 60, 830, 1017, 1105 |
| MaeIII | GTNAC | 1 cut(s) | 466 |
| MalI | GATC | 7 cut(s) | 5, 142, 575, 789, 844, 857, 1003 |
| MboI | GATC | 7 cut(s) | 3, 140, 573, 787, 842, 855, 1001 |
| MfeI | CAATTG | 1 cut(s) | 471 |
| MflI | RGATCY | 1 cut(s) | 1001 |
| MhlI | GDGCHC | 4 cut(s) | 214, 499, 529, 756 |
| MlsI | TGGCCA | 2 cut(s) | 430, 447 |
| MluNI | TGGCCA | 2 cut(s) | 430, 447 |
| MlyI | GAGTC | 2 cut(s) | 127, 1095 |
| Mox20I | TGGCCA | 2 cut(s) | 430, 447 |
| MscI | TGGCCA | 2 cut(s) | 430, 447 |
| MseI | TTAA | 5 cut(s) | 65, 180, 239, 243, 1062 |
| MslI | CAYNNNNRTG | 1 cut(s) | 363 |
| Msp20I | TGGCCA | 2 cut(s) | 430, 447 |
| MspA1I | CMGCKG | 1 cut(s) | 1097 |
| MspI | CCGG | 3 cut(s) | 184, 266, 945 |
| MunI | CAATTG | 1 cut(s) | 471 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 266, 444 |
| NcoI | CCATGG | 3 cut(s) | 431, 618, 716 |
| NdeI | CATATG | 1 cut(s) | 668 |
| NdeII | GATC | 7 cut(s) | 3, 140, 573, 787, 842, 855, 1001 |
| NlaIII | CATG | 6 cut(s) | 435, 446, 622, 720, 803, 1080 |
| NlaIV | GGNNCC | 2 cut(s) | 1034, 1082 |
| NspI | RCATGY | 1 cut(s) | 803 |
| NspV | TTCGAA | 1 cut(s) | 634 |
| OliI | CACNNNNGTG | 1 cut(s) | 363 |
| PacI | TTAATTAA | 1 cut(s) | 243 |
| PciSI | GCTCTTC | 2 cut(s) | 504, 534 |
| PfeI | GAWTC | 1 cut(s) | 202 |
| PkrI | GCNGC | 2 cut(s) | 610, 1075 |
| PleI | GAGTC | 2 cut(s) | 126, 1095 |
| PpsI | GAGTC | 2 cut(s) | 126, 1095 |
| PspN4I | GGNNCC | 2 cut(s) | 1034, 1082 |
| PspPI | GGNCC | 2 cut(s) | 1032, 1080 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 687, 719 |
| PstI | CTGCAG | 1 cut(s) | 351 |
| PsuI | RGATCY | 1 cut(s) | 1001 |
| PvuII | CAGCTG | 1 cut(s) | 1097 |
| RsaI | GTAC | 1 cut(s) | 676 |
| RsaNI | GTAC | 1 cut(s) | 675 |
| RseI | CAYNNNNRTG | 1 cut(s) | 363 |
| SapI | GCTCTTC | 2 cut(s) | 504, 534 |
| SaqAI | TTAA | 5 cut(s) | 65, 180, 239, 243, 1062 |
| SatI | GCNGC | 2 cut(s) | 609, 1074 |
| Sau3AI | GATC | 7 cut(s) | 3, 140, 573, 787, 842, 855, 1001 |
| Sau96I | GGNCC | 2 cut(s) | 1032, 1080 |
| SchI | GAGTC | 2 cut(s) | 127, 1095 |
| SduI | GDGCHC | 4 cut(s) | 214, 499, 529, 756 |
| SfaNI | GCATC | 2 cut(s) | 881, 1060 |
| SfcI | CTRYAG | 1 cut(s) | 347 |
| SfuI | TTCGAA | 1 cut(s) | 634 |
| SinI | GGWCC | 2 cut(s) | 1032, 1080 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 363 |
| SmlI | CTYRAG | 1 cut(s) | 503 |
| SmoI | CTYRAG | 1 cut(s) | 503 |
| SspMI | CTAG | 5 cut(s) | 21, 60, 830, 1017, 1105 |
| StyI | CCWWGG | 3 cut(s) | 431, 618, 716 |
| TaaI | ACNGT | 1 cut(s) | 819 |
| TaqI | TCGA | 1 cut(s) | 634 |
| TfiI | GAWTC | 1 cut(s) | 202 |
| Tru1I | TTAA | 5 cut(s) | 65, 180, 239, 243, 1062 |
| Tru9I | TTAA | 5 cut(s) | 65, 180, 239, 243, 1062 |
| TseI | GCWGC | 2 cut(s) | 608, 1073 |
| TspDTI | ATGAA | 3 cut(s) | 27, 653, 696 |
| VpaK11BI | GGWCC | 2 cut(s) | 1032, 1080 |
| XapI | RAATTY | 2 cut(s) | 303, 580 |
| XceI | RCATGY | 1 cut(s) | 803 |
| XspI | CTAG | 5 cut(s) | 21, 60, 830, 1017, 1105 |