ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 97 - 213 | 8.8e-13 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 319 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 351 |
| AccIII | TCCGGA | 1 cut(s) | 649 |
| AciI | CCGC | 3 cut(s) | 413, 620, 660 |
| AclWI | GGATC | 1 cut(s) | 287 |
| AcoI | YGGCCR | 1 cut(s) | 207 |
| AcsI | RAATTY | 1 cut(s) | 502 |
| AdeI | CACNNNGTG | 1 cut(s) | 101 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 324, 351 |
| AgsI | TTSAA | 2 cut(s) | 179, 289 |
| AluBI | AGCT | 3 cut(s) | 107, 158, 485 |
| AluI | AGCT | 3 cut(s) | 107, 158, 485 |
| Alw26I | GTCTC | 5 cut(s) | 9, 264, 552, 603, 651 |
| AlwI | GGATC | 1 cut(s) | 287 |
| Aor13HI | TCCGGA | 1 cut(s) | 649 |
| AoxI | GGCC | 1 cut(s) | 207 |
| ApeKI | GCWGC | 1 cut(s) | 404 |
| ApoI | RAATTY | 1 cut(s) | 502 |
| AspLEI | GCGC | 1 cut(s) | 150 |
| AsuC2I | CCSGG | 1 cut(s) | 196 |
| AsuHPI | GGTGA | 3 cut(s) | 58, 475, 688 |
| BalI | TGGCCA | 1 cut(s) | 209 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 414, 446 |
| BauI | CACGAG | 2 cut(s) | 231, 549 |
| BbsI | GAAGAC | 1 cut(s) | 713 |
| BbvI | GCAGC | 1 cut(s) | 391 |
| BccI | CCATC | 4 cut(s) | 199, 403, 694, 710 |
| BcnI | CCSGG | 1 cut(s) | 196 |
| BcoDI | GTCTC | 5 cut(s) | 9, 264, 552, 603, 651 |
| BfuAI | ACCTGC | 1 cut(s) | 319 |
| BisI | GCNGC | 3 cut(s) | 405, 621, 661 |
| BlsI | GCNGC | 3 cut(s) | 406, 622, 662 |
| Bme1390I | CCNGG | 1 cut(s) | 196 |
| BmrFI | CCNGG | 1 cut(s) | 196 |
| BmsI | GCATC | 4 cut(s) | 286, 353, 416, 466 |
| BpiI | GAAGAC | 1 cut(s) | 713 |
| Bpu10I | CCTNAGC | 1 cut(s) | 664 |
| BpuEI | CTTGAG | 1 cut(s) | 465 |
| BpuMI | CCSGG | 1 cut(s) | 196 |
| BsaI | GGTCTC | 3 cut(s) | 9, 264, 603 |
| BsaWI | WCCGGW | 2 cut(s) | 18, 649 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 324, 351 |
| BseAI | TCCGGA | 1 cut(s) | 649 |
| BseGI | GGATG | 2 cut(s) | 368, 431 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 324, 351 |
| BseMII | CTCAG | 2 cut(s) | 74, 678 |
| BseRI | GAGGAG | 2 cut(s) | 252, 583 |
| BseXI | GCAGC | 1 cut(s) | 391 |
| BseYI | CCCAGC | 1 cut(s) | 669 |
| BsgI | GTGCAG | 1 cut(s) | 473 |
| BshFI | GGCC | 1 cut(s) | 209 |
| BsiSI | CCGG | 3 cut(s) | 19, 196, 650 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 324, 351 |
| BsmAI | GTCTC | 5 cut(s) | 9, 264, 552, 603, 651 |
| BsnI | GGCC | 1 cut(s) | 209 |
| Bso31I | GGTCTC | 3 cut(s) | 9, 264, 603 |
| Bsp13I | TCCGGA | 1 cut(s) | 649 |
| Bsp143I | GATC | 3 cut(s) | 63, 279, 605 |
| BspACI | CCGC | 3 cut(s) | 413, 620, 660 |
| BspANI | GGCC | 1 cut(s) | 209 |
| BspCNI | CTCAG | 2 cut(s) | 73, 677 |
| BspEI | TCCGGA | 1 cut(s) | 649 |
| BspMI | ACCTGC | 1 cut(s) | 319 |
| BspPI | GGATC | 1 cut(s) | 287 |
| BspTNI | GGTCTC | 3 cut(s) | 9, 264, 603 |
| BssMI | GATC | 3 cut(s) | 63, 279, 605 |
| BssSI | CACGAG | 2 cut(s) | 231, 549 |
| Bst2BI | CACGAG | 2 cut(s) | 231, 549 |
| Bst4CI | ACNGT | 2 cut(s) | 99, 373 |
| Bst6I | CTCTTC | 1 cut(s) | 46 |
| BstC8I | GCNNGC | 1 cut(s) | 393 |
| BstDEI | CTNAG | 3 cut(s) | 60, 399, 664 |
| BstF5I | GGATG | 2 cut(s) | 368, 431 |
| BstHHI | GCGC | 1 cut(s) | 150 |
| BstKTI | GATC | 3 cut(s) | 66, 282, 608 |
| BstMAI | GTCTC | 5 cut(s) | 9, 264, 552, 603, 651 |
| BstMBI | GATC | 3 cut(s) | 63, 279, 605 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 401, 410, 617, 666 |
| BstNSI | RCATGY | 2 cut(s) | 303, 395 |
| BstSCI | CCNGG | 1 cut(s) | 194 |
| BstV1I | GCAGC | 1 cut(s) | 391 |
| BstV2I | GAAGAC | 1 cut(s) | 713 |
| BsuRI | GGCC | 1 cut(s) | 209 |
| BtgZI | GCGATG | 1 cut(s) | 422 |
| BtsCI | GGATG | 2 cut(s) | 368, 431 |
| BtsIMutI | CAGTG | 1 cut(s) | 378 |
| BveI | ACCTGC | 1 cut(s) | 319 |
| Cac8I | GCNNGC | 1 cut(s) | 393 |
| CfoI | GCGC | 1 cut(s) | 150 |
| CviAII | CATG | 5 cut(s) | 75, 300, 392, 582, 726 |
| DdeI | CTNAG | 3 cut(s) | 60, 399, 664 |
| DpnI | GATC | 3 cut(s) | 65, 281, 607 |
| DpnII | GATC | 3 cut(s) | 63, 279, 605 |
| DraIII | CACNNNGTG | 1 cut(s) | 101 |
| EaeI | YGGCCR | 1 cut(s) | 207 |
| Eam1104I | CTCTTC | 1 cut(s) | 46 |
| EarI | CTCTTC | 1 cut(s) | 46 |
| Eco31I | GGTCTC | 3 cut(s) | 9, 264, 603 |
| Eco32I | GATATC | 1 cut(s) | 123 |
| EcoRV | GATATC | 1 cut(s) | 123 |
| EcoT22I | ATGCAT | 2 cut(s) | 301, 368 |
| FaeI | CATG | 5 cut(s) | 78, 303, 395, 585, 729 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 705, 737 |
| FatI | CATG | 5 cut(s) | 74, 299, 391, 581, 725 |
| Fnu4HI | GCNGC | 3 cut(s) | 405, 621, 661 |
| FokI | GGATG | 2 cut(s) | 375, 438 |
| Fsp4HI | GCNGC | 3 cut(s) | 405, 621, 661 |
| GlaI | GCGC | 1 cut(s) | 149 |
| GluI | GCNGC | 3 cut(s) | 405, 621, 661 |
| GsaI | CCCAGC | 1 cut(s) | 673 |
| HaeIII | GGCC | 1 cut(s) | 209 |
| HapII | CCGG | 3 cut(s) | 19, 196, 650 |
| HhaI | GCGC | 1 cut(s) | 150 |
| Hin1II | CATG | 5 cut(s) | 78, 303, 395, 585, 729 |
| Hin6I | GCGC | 1 cut(s) | 148 |
| HinP1I | GCGC | 1 cut(s) | 148 |
| HinfI | GANTC | 3 cut(s) | 24, 199, 314 |
| HpaII | CCGG | 3 cut(s) | 19, 196, 650 |
| HphI | GGTGA | 3 cut(s) | 58, 475, 688 |
| Hpy166II | GTNNAC | 1 cut(s) | 575 |
| Hpy188I | TCNGA | 3 cut(s) | 63, 204, 475 |
| Hpy188III | TCNNGA | 4 cut(s) | 179, 360, 565, 650 |
| Hpy8I | GTNNAC | 1 cut(s) | 575 |
| HpyAV | CCTTC | 3 cut(s) | 79, 258, 416 |
| HpyCH4III | ACNGT | 2 cut(s) | 99, 373 |
| HpyCH4V | TGCA | 4 cut(s) | 299, 366, 391, 454 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 401, 410, 617, 666 |
| HpyF3I | CTNAG | 3 cut(s) | 60, 399, 664 |
| Hsp92II | CATG | 5 cut(s) | 78, 303, 395, 585, 729 |
| HspAI | GCGC | 1 cut(s) | 148 |
| Kpn2I | TCCGGA | 1 cut(s) | 649 |
| Kzo9I | GATC | 3 cut(s) | 63, 279, 605 |
| LmnI | GCTCC | 1 cut(s) | 540 |
| Lsp1109I | GCAGC | 1 cut(s) | 391 |
| LweI | GCATC | 4 cut(s) | 286, 353, 416, 466 |
| MaeIII | GTNAC | 3 cut(s) | 8, 93, 676 |
| MalI | GATC | 3 cut(s) | 65, 281, 607 |
| MboI | GATC | 3 cut(s) | 63, 279, 605 |
| MboII | GAAGA | 3 cut(s) | 63, 681, 713 |
| MlsI | TGGCCA | 1 cut(s) | 209 |
| MluCI | AATT | 2 cut(s) | 274, 502 |
| MluNI | TGGCCA | 1 cut(s) | 209 |
| MlyI | GAGTC | 1 cut(s) | 208 |
| MmeI | TCCRAC | 1 cut(s) | 284 |
| MnlI | CCTC | 6 cut(s) | 175, 273, 520, 553, 561, 693 |
| Mox20I | TGGCCA | 1 cut(s) | 209 |
| Mph1103I | ATGCAT | 2 cut(s) | 301, 368 |
| MroI | TCCGGA | 1 cut(s) | 649 |
| MscI | TGGCCA | 1 cut(s) | 209 |
| MseI | TTAA | 4 cut(s) | 114, 189, 273, 468 |
| MslI | CAYNNNNRTG | 1 cut(s) | 371 |
| Msp20I | TGGCCA | 1 cut(s) | 209 |
| MspI | CCGG | 3 cut(s) | 19, 196, 650 |
| MspR9I | CCNGG | 1 cut(s) | 196 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 401, 410, 617, 666 |
| NciI | CCSGG | 1 cut(s) | 196 |
| NdeII | GATC | 3 cut(s) | 63, 279, 605 |
| NlaIII | CATG | 5 cut(s) | 78, 303, 395, 585, 729 |
| NmuCI | GTSAC | 3 cut(s) | 8, 93, 676 |
| NsiI | ATGCAT | 2 cut(s) | 301, 368 |
| NspI | RCATGY | 2 cut(s) | 303, 395 |
| PaeI | GCATGC | 1 cut(s) | 395 |
| PfeI | GAWTC | 2 cut(s) | 24, 314 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 351 |
| PkrI | GCNGC | 3 cut(s) | 406, 622, 662 |
| PleI | GAGTC | 1 cut(s) | 207 |
| PpsI | GAGTC | 1 cut(s) | 207 |
| PspFI | CCCAGC | 1 cut(s) | 669 |
| RseI | CAYNNNNRTG | 1 cut(s) | 371 |
| SaqAI | TTAA | 4 cut(s) | 114, 189, 273, 468 |
| SatI | GCNGC | 3 cut(s) | 405, 621, 661 |
| Sau3AI | GATC | 3 cut(s) | 63, 279, 605 |
| SchI | GAGTC | 1 cut(s) | 208 |
| ScrFI | CCNGG | 1 cut(s) | 196 |
| SetI | ASST | 9 cut(s) | 71, 109, 160, 176, 333, 453, 487, 564, 685 |
| SfaNI | GCATC | 4 cut(s) | 286, 353, 416, 466 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 371 |
| SmlI | CTYRAG | 1 cut(s) | 480 |
| SmoI | CTYRAG | 1 cut(s) | 480 |
| SphI | GCATGC | 1 cut(s) | 395 |
| Sse9I | AATT | 2 cut(s) | 274, 502 |
| SsiI | CCGC | 3 cut(s) | 413, 620, 660 |
| StyD4I | CCNGG | 1 cut(s) | 194 |
| TaaI | ACNGT | 2 cut(s) | 99, 373 |
| TaqII | GACCGA | 1 cut(s) | 27 |
| TasI | AATT | 2 cut(s) | 274, 502 |
| TauI | GCSGC | 2 cut(s) | 623, 663 |
| TfiI | GAWTC | 2 cut(s) | 24, 314 |
| Tru1I | TTAA | 4 cut(s) | 114, 189, 273, 468 |
| Tru9I | TTAA | 4 cut(s) | 114, 189, 273, 468 |
| TscAI | CASTG | 1 cut(s) | 378 |
| TseFI | GTSAC | 3 cut(s) | 8, 93, 676 |
| TseI | GCWGC | 1 cut(s) | 404 |
| Tsp45I | GTSAC | 3 cut(s) | 8, 93, 676 |
| TspDTI | ATGAA | 1 cut(s) | 73 |
| TspGWI | ACGGA | 2 cut(s) | 44, 723 |
| TspRI | CASTG | 1 cut(s) | 378 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 351 |
| XapI | RAATTY | 1 cut(s) | 502 |
| XceI | RCATGY | 2 cut(s) | 303, 395 |
| Zsp2I | ATGCAT | 2 cut(s) | 301, 368 |