FvH4_5g08801

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000093
Physical Location & Seq
Reverse (-)
5047288 .. 5051431
4144 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g08801.t1

Sequence Viewer

Length: 3147 bp
ATGAGTACAATTCTTTCTTGGAACTGTCAAGGATTGGGGCGTGCCTTGACGGTTCGGAAGCTTGGAGAGCTTTTGCGCTCCCACTCCCCTCCTCTAGTTTTTTTGTCAGAAACGAAGCAGTCTTGTTTTAGAATCAATAATCTTAGGAGACAATATAGGTACTTCAAGGGTATCACTGTTAACCCCTCAGCCACTAGTGTTGGTGGGTTAGCACTTTGGTGGAAGCCGGAGGTAGATGTGGATATTGTCTCCAAGAGCAAGAATTTGATTGATACTGTGGTTAGGTTCACCAATCTCGGCATCTCTGTAAGAATCTCTTTTTTCTATGGCCCCCCTTATCAGGAGAACAAGAGTGAGTTCTGGGATTCCCTCTCAAACATGGCTTTCTCTCATGACACCCCTTGGATCTGTATCGGCGACTTCAATGAGATTGTTGCTAATTTTGAAAAGGATGGTGGGGTTCCTTGGCACTGGAATAGAGTCAAATTCTTGAGGGATTTCATGGATAATAATTCTCTGGTGGATTTCAATTTCACTGGTCCTATGTTTACTTGGGAAAATCGGCGGGAAGATTGTTCAGAGGTCATAAGGGAACGGCTGGATCGAGCAGTTGGGAATGTGGAAGTTTTGGAAGAATGGCCGGACTCCTTTGTTCTTCATGAGCCTCGAGTAGGTTCGGATCATTGCCCTCTTATTTTTCATTCTCACTCCACCATCCCAAAAAGGCCTAAAACCTTCAAGTTTGAAGCGAGCTGGGCCGAGGACATTGAGTGTCAAGCCCTTATTGATTCTTGCTGGGATTCGAATCGCTATGCCAACCCGTTTGTCTCCTGGGAGGCTAATCTCCGCTCTTGTAAAAAGAGGTTGGTAGCATGGAGTAAAGAAAAATTCCCAAACAACAAAGCTACTATTGATGCTCTGAATTGGGAGTTAAAAGGAATCCAGGAGGGTACTATTGATGCTGTTTCTAGAACTAGGGAGTCTGTGATCCTTGAAGAGTTGAACTCAGCATGGTCCTTTGAGGAATCATTTTGGAAGCAGAGGTCGAGAATCAATTGGTTGTTGGAGGGGGATCGAAACACGAAATTCTTCCATCTTACCACTATCTACAGGAGAAATAAGAATCGCATAAGCAGTTTGTGTCTTGATAATGCGAACTGGATCAGTGGTGAAGCACAAATCAGTTTAGCTTTTGCAGAGTTCTATGGAAAGCTTTATACTTCTACAGGTCCAAGAGATTGGGGTGGTATTTTGGACACTATCAATTGTCAAGTCTCCGAGGACCAGAATAGATCTATCATCAAACCTTTCTCCCATGAGGAAATTTTTTTGGCGGTGAAGCAGTTGGAGGCTATTCGCAAGGATCAACTGCAGTGTATCAAACTCAGTCCAAACAGCCCAGGACTCTCGCATCTGATGTTCGCGGATGACACAATTTTCTTCACCAAGGTAACGACCTCAAATTGTCAAGCCCTGAGAAATATTCTTGATTCTTACTGTGCGGCCTCGGGACAGGCGATTAACTTTGATAAATCTTCGGTCTTTTTCTCAGCTAATACTCCTGATCCGAAGAGATCTGCTATTGCTACTGTTCTTCAAATCCCATGTGTGTCCCAACCTGGAGTCTACTTGGGTTTACCTACTCTGTGGGGTAACTCTAAGCGTAGTGCGATGACTTTTATCAGAGAACGGATTAGGCAGAAGATCGAGGGCTGGAAAGCAAATATTCTCTCCCAAGCTGGAAGGGAAGTCCTTATTAAATCTGTTGCTATGGCTGTGCCCTCCTACCCTATGTCAATCTTTCTTCTGCCCAAGACTCTCTGCAAGGCTATCAACTCCGATCTCTCAAACTTCTGGTGGGGGTATTCAGACGTCAAGACCAAGGTCCACTGGTGGGAGGATCTGAGCAAGAGTAAGTTTGATGGTGGTTTGGGCTTCAAGGAGTTGCAGTCTTTCAACCTCGCCCTCCTCGCAAAGCAGTGCTGGAGATTGATTAATAAGCCTGATTCTCTATGGGGGAGGATTCTAAAGGCTAGATACTTTAACCACTCTTCCTTCTTGAAAGCTAAGAAAGGCTCCAGGCCTTCTTGGATCTGGAACAGTTTGCTAGCTGGCAGAGATTCCATCAGTAATCACTCGAGGTGGCAGGTTCGTAATGGGAAAAGGAATTGGAATATTACTCACTTGGAACCGTTTTTGAATGGTGATGATGCCAAGGCCATCAAATCTATTCCAATTGGCAGTGAGAATGACAGAGATGTTCTCATTTGGCCTTTTTCTAAGAGTGGTGTCTATTCAGCAAAAAGTGGCTACAGAAGGATTGTCAAGGAGCAGGGGGGAAGAAAAATTATTCCAGACCCTTTGTGTGCTATTTGTGGTGAGCATCCGGAAACTACGGAGCATTGCCTACTTCTATGCCCTTGGACTAGCGCTGTATGGTTTGGGAGCTCTTTGGGATACATCCCAGAGAAGGCCTCTATCACAAGCTTGGATGCTTGGCTTCTAGCAGTTTCTGGCAATTCTGTAATGAAGAGGGTCTCCCCTAACCTTGTTACTACTATAGAGAACATTCACAGAAGCTTTAAAGAGTGGTCTGAAGCTCAGTCTGATTATGACACTCCCCCAGATGAGCCTCGGAGACCTACTGCAAGCAAATTGTGGCATCCTCCCCCTCCAAATGTGGTAAAAGTTAACATTGATGCAGCTTGGAAGATGAGTAACCAACACAGTGGGATTGGTCTAGTGGTGCGTAACCATAGGGGTTGTTCTATTGCTGGTGCAAGTCTCTTGTGCTCCCATAATTCTGTTGTTGAGGCCGAGGCTGACTCGGTGGTTAAAGGTCTTCAAATTGCAAGGTTTCTGAATTTGAAAAATGTTATCATTGAGGGTGATTGCCAGGAGGTCATTAGGTCTCTCTCTTCCCCAACTTTCACTCCCAATTGGAAAATTCTACCTATTCTCAATAGAGTGAAGTTTCTGTTGCCTGCCTTTGATGAGGTGTTATGGAACTGGGTTCCCCGTGAAGCTAACCGGGTTGCTGACGCAGCGGCGAAGCTTGCCATGGTGAGGTTGTGCTCTTCGGACTGGGCTAATACGCCTCCAACCTCCCTCCTTCATATTCTTAGGAGCGATGGCCCCCCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

1049

Amino Acids

119.07

Weight (kDa)

8.95

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 5 - 228 4.1e-14 Endonuclease/Exonuclease/phosphatase family
RVT_3 PF13456 898 - 1020 6.5e-26 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1875
Acc36I ACCTGC 1 cut(s) 2137
AccBSI CCGCTC 1 cut(s) 849
AccI GTMKAC 1 cut(s) 1626
AccII CGCG 1 cut(s) 1424
AccIII TCCGGA 1 cut(s) 2386
AciI CCGC 6 cut(s) 565, 847, 1334, 1424, 1502, 3047
AcoI YGGCCR 1 cut(s) 638
AcsI RAATTY 7 cut(s) 262, 485, 887, 1085, 1323, 2863, 2946
AcuI CTGAAG 1 cut(s) 2616
AcyI GRCGYC 1 cut(s) 1872
AfaI GTAC 3 cut(s) 7, 161, 952
AfeI AGCGCT 1 cut(s) 2431
AfiI CCNNNNNNNGG 5 cut(s) 340, 671, 1894, 2470, 3066
AhlI ACTAGT 1 cut(s) 194
AjnI CCWGG 6 cut(s) 830, 942, 1399, 1618, 2078, 2895
AleI CACNNNNGTG 1 cut(s) 217
Alw21I GWGCWC 3 cut(s) 2450, 2795, 3077
Alw26I GTCTC 8 cut(s) 142, 253, 832, 1279, 2542, 2632, 2789, 2916
AlwNI CAGNNNCTG 1 cut(s) 2513
Ama87I CYCGRG 3 cut(s) 666, 1507, 2137
Aor13HI TCCGGA 1 cut(s) 2386
Aor51HI AGCGCT 1 cut(s) 2431
ApeKI GCWGC 2 cut(s) 2702, 3044
ApoI RAATTY 7 cut(s) 262, 485, 887, 1085, 1323, 2863, 2946
AseI ATTAAT 1 cut(s) 1995
Asp700I GAANNNNTTC 1 cut(s) 1088
AspLEI GCGC 2 cut(s) 78, 2432
AspS9I GGNCC 8 cut(s) 329, 539, 756, 1014, 1229, 1282, 1885, 3134
AsuC2I CCSGG 1 cut(s) 3032
AsuHPI GGTGA 8 cut(s) 280, 1181, 1348, 1435, 2216, 2390, 2900, 3076
AsuII TTCGAA 1 cut(s) 803
AsuNHI GCTAGC 1 cut(s) 2107
AvaI CYCGRG 3 cut(s) 666, 1507, 2137
AvaII GGWCC 5 cut(s) 539, 1014, 1229, 1282, 1885
BaeGI GKGCMC 1 cut(s) 1782
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
BanII GRGCYC 1 cut(s) 2450
BbsI GAAGAC 1 cut(s) 2834
Bbv12I GWGCWC 3 cut(s) 2450, 2795, 3077
BbvCI CCTCAGC 1 cut(s) 187
BbvI GCAGC 2 cut(s) 2714, 3056
BccI CCATC 7 cut(s) 446, 722, 1101, 1916, 2132, 2228, 3125
BceAI ACGGC 1 cut(s) 611
BciT130I CCWGG 6 cut(s) 832, 944, 1401, 1620, 2080, 2897
BciVI GTATCC 1 cut(s) 2450
BcnI CCSGG 1 cut(s) 3032
BcoDI GTCTC 8 cut(s) 142, 253, 832, 1279, 2542, 2632, 2789, 2916
BcuI ACTAGT 1 cut(s) 194
BfaI CTAG 9 cut(s) 95, 195, 969, 975, 2034, 2108, 2427, 2504, 2741
BfmI CTRYAG 5 cut(s) 1108, 1224, 1370, 2311, 2559
BfoI RGCGCY 1 cut(s) 2433
BfuAI ACCTGC 1 cut(s) 2137
BfuI GTATCC 1 cut(s) 2450
BglII AGATCT 2 cut(s) 1292, 1574
BisI GCNGC 4 cut(s) 1503, 2703, 3045, 3048
BlsI GCNGC 4 cut(s) 1504, 2704, 3046, 3049
Bme1390I CCNGG 7 cut(s) 832, 944, 1401, 1620, 2080, 2897, 3032
Bme18I GGWCC 5 cut(s) 539, 1014, 1229, 1282, 1885
BmeT110I CYCGRG 3 cut(s) 666, 1507, 2137
BmgT120I GGNCC 8 cut(s) 329, 539, 756, 1014, 1229, 1282, 1885, 3134
BmiI GGNNCC 6 cut(s) 331, 462, 2077, 2190, 3015, 3136
BmrFI CCNGG 7 cut(s) 832, 944, 1401, 1620, 2080, 2897, 3032
BmrI ACTGGG 2 cut(s) 3019, 3094
BmsI GCATC 9 cut(s) 309, 904, 949, 1420, 2200, 2392, 2482, 2671, 2689
BmtI GCTAGC 1 cut(s) 2111
BmuI ACTGGG 2 cut(s) 3019, 3094
BoxI GACNNNNGTC 1 cut(s) 1883
BpiI GAAGAC 1 cut(s) 2834
BplI GAGNNNNNCTC 8 cut(s) 989, 1021, 2247, 2279, 2459, 2491, 2810, 2842
BpmI CTGGAG 3 cut(s) 1641, 2005, 2062
Bpu10I CCTNAGC 1 cut(s) 187
Bpu14I TTCGAA 1 cut(s) 803
BpuEI CTTGAG 1 cut(s) 511
BpuMI CCSGG 1 cut(s) 3032
BsaBI GATNNNNATC 2 cut(s) 410, 804
BsaHI GRCGYC 1 cut(s) 1872
BsaI GGTCTC 3 cut(s) 2542, 2632, 2916
BsaWI WCCGGW 1 cut(s) 2386
BsaXI ACNNNNNCTCC 4 cut(s) 1934, 1964, 2917, 2947
Bsc4I CCNNNNNNNGG 5 cut(s) 340, 671, 1894, 2470, 3066
Bse1I ACTGG 6 cut(s) 476, 541, 1163, 1895, 3014, 3089
Bse3DI GCAATG 2 cut(s) 682, 2401
Bse8I GATNNNNATC 2 cut(s) 410, 804
BseAI TCCGGA 1 cut(s) 2386
BseBI CCWGG 6 cut(s) 832, 944, 1401, 1620, 2080, 2897
BseGI GGATG 7 cut(s) 457, 714, 1432, 2383, 2460, 2497, 2662
BseJI GATNNNNATC 2 cut(s) 410, 804
BseLI CCNNNNNNNGG 5 cut(s) 340, 671, 1894, 2470, 3066
BseMI GCAATG 2 cut(s) 682, 2401
BseMII CTCAG 7 cut(s) 201, 1020, 1399, 1466, 1563, 1895, 2615
BseNI ACTGG 6 cut(s) 476, 541, 1163, 1895, 3014, 3089
BseRI GAGGAG 2 cut(s) 81, 1958
BseSI GKGCMC 1 cut(s) 1782
BseXI GCAGC 2 cut(s) 2714, 3056
BseYI CCCAGC 2 cut(s) 753, 795
Bsh1236I CGCG 1 cut(s) 1424
BsiHKAI GWGCWC 3 cut(s) 2450, 2795, 3077
BsiHKCI CYCGRG 3 cut(s) 666, 1507, 2137
BsiSI CCGG 4 cut(s) 227, 641, 2387, 3031
BslFI GGGAC 2 cut(s) 1524, 1597
BslI CCNNNNNNNGG 5 cut(s) 340, 671, 1894, 2470, 3066
BsmAI GTCTC 8 cut(s) 142, 253, 832, 1279, 2542, 2632, 2789, 2916
BsmFI GGGAC 2 cut(s) 1524, 1597
Bso31I GGTCTC 3 cut(s) 2542, 2632, 2916
BsoBI CYCGRG 3 cut(s) 666, 1507, 2137
Bsp119I TTCGAA 1 cut(s) 803
Bsp1286I GDGCHC 4 cut(s) 1782, 2450, 2795, 3077
Bsp13I TCCGGA 1 cut(s) 2386
Bsp19I CCATGG 1 cut(s) 3060
BspACI CCGC 6 cut(s) 565, 847, 1334, 1424, 1502, 3047
BspCNI CTCAG 7 cut(s) 200, 1019, 1398, 1467, 1562, 1896, 2614
BspEI TCCGGA 1 cut(s) 2386
BspFNI CGCG 1 cut(s) 1424
BspHI TCATGA 2 cut(s) 391, 658
BspLI GGNNCC 6 cut(s) 331, 462, 2077, 2190, 3015, 3136
BspMAI CTGCAG 1 cut(s) 1374
BspMI ACCTGC 1 cut(s) 2137
BspOI GCTAGC 1 cut(s) 2111
BspQI GCTCTTC 1 cut(s) 3082
BspT104I TTCGAA 1 cut(s) 803
BspTNI GGTCTC 3 cut(s) 2542, 2632, 2916
BsrBI CCGCTC 1 cut(s) 849
BsrDI GCAATG 2 cut(s) 682, 2401
BsrI ACTGG 6 cut(s) 476, 541, 1163, 1895, 3014, 3089
BssNI GRCGYC 1 cut(s) 1872
BssT1I CCWWGG 7 cut(s) 401, 464, 1446, 1881, 2214, 2420, 3060
Bst2UI CCWGG 6 cut(s) 832, 944, 1401, 1620, 2080, 2897
Bst4CI ACNGT 9 cut(s) 26, 52, 178, 277, 1499, 1591, 2102, 2193, 2729
Bst6I CTCTTC 6 cut(s) 990, 1565, 2056, 2525, 2923, 3082
BstACI GRCGYC 1 cut(s) 1872
BstBI TTCGAA 1 cut(s) 803
BstC8I GCNNGC 7 cut(s) 42, 751, 2109, 2113, 2650, 2985, 3057
BstDSI CCRYGG 1 cut(s) 3060
BstENI CCTNNNNNAGG 1 cut(s) 669
BstF5I GGATG 7 cut(s) 457, 714, 1432, 2383, 2460, 2497, 2662
BstFNI CGCG 1 cut(s) 1424
BstH2I RGCGCY 1 cut(s) 2433
BstHHI GCGC 2 cut(s) 78, 2432
BstMAI GTCTC 8 cut(s) 142, 253, 832, 1279, 2542, 2632, 2789, 2916
BstMWI GCNNNNNNNGC 5 cut(s) 67, 755, 1970, 3044, 3056
BstNI CCWGG 6 cut(s) 832, 944, 1401, 1620, 2080, 2897
BstPAI GACNNNNGTC 1 cut(s) 1883
BstSCI CCNGG 7 cut(s) 830, 942, 1399, 1618, 2078, 2895, 3030
BstSFI CTRYAG 5 cut(s) 1108, 1224, 1370, 2311, 2559
BstSLI GKGCMC 1 cut(s) 1782
BstUI CGCG 1 cut(s) 1424
BstV1I GCAGC 2 cut(s) 2714, 3056
BstV2I GAAGAC 1 cut(s) 2834
BstX2I RGATCY 5 cut(s) 405, 1292, 1574, 1900, 2091
BstXI CCANNNNNNTGG 2 cut(s) 1239, 2729
BstYI RGATCY 5 cut(s) 405, 1292, 1574, 1900, 2091
BsuI GTATCC 1 cut(s) 2450
BtgI CCRYGG 1 cut(s) 3060
BtgZI GCGATG 1 cut(s) 1685
BtsCI GGATG 7 cut(s) 457, 714, 1432, 2383, 2460, 2497, 2662
BtsI GCAGTG 3 cut(s) 1379, 1985, 2248
BtsIMutI CAGTG 9 cut(s) 174, 469, 534, 1171, 1379, 1888, 1985, 2248, 2734
BveI ACCTGC 1 cut(s) 2137
Cac8I GCNNGC 7 cut(s) 42, 751, 2109, 2113, 2650, 2985, 3057
CaiI CAGNNNCTG 1 cut(s) 2513
CciI TCATGA 2 cut(s) 391, 658
CfoI GCGC 2 cut(s) 78, 2432
Cfr13I GGNCC 8 cut(s) 329, 539, 756, 1014, 1229, 1282, 1885, 3134
CseI GACGC 1 cut(s) 3050
Csp6I GTAC 3 cut(s) 6, 160, 951
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 9 cut(s) 379, 392, 502, 659, 873, 1011, 1316, 1605, 3061
CviQI GTAC 3 cut(s) 6, 160, 951
DraI TTTAAA 1 cut(s) 2584
EaeI YGGCCR 1 cut(s) 638
Eam1104I CTCTTC 6 cut(s) 990, 1565, 2056, 2525, 2923, 3082
EarI CTCTTC 6 cut(s) 990, 1565, 2056, 2525, 2923, 3082
Ecl136II GAGCTC 1 cut(s) 2448
Eco130I CCWWGG 7 cut(s) 401, 464, 1446, 1881, 2214, 2420, 3060
Eco147I AGGCCT 3 cut(s) 727, 2083, 2474
Eco24I GRGCYC 1 cut(s) 2450
Eco31I GGTCTC 3 cut(s) 2542, 2632, 2916
Eco47I GGWCC 5 cut(s) 539, 1014, 1229, 1282, 1885
Eco47III AGCGCT 1 cut(s) 2431
Eco53kI GAGCTC 1 cut(s) 2448
Eco57I CTGAAG 1 cut(s) 2616
Eco88I CYCGRG 3 cut(s) 666, 1507, 2137
EcoICRI GAGCTC 1 cut(s) 2448
EcoNI CCTNNNNNAGG 1 cut(s) 669
EcoRII CCWGG 6 cut(s) 830, 942, 1399, 1618, 2078, 2895
EcoT14I CCWWGG 7 cut(s) 401, 464, 1446, 1881, 2214, 2420, 3060
EcoT38I GRGCYC 1 cut(s) 2450
ErhI CCWWGG 7 cut(s) 401, 464, 1446, 1881, 2214, 2420, 3060
FaeI CATG 9 cut(s) 382, 395, 505, 662, 876, 1014, 1319, 1608, 3064
FalI AAGNNNNNCTT 2 cut(s) 301, 333
FaqI GGGAC 2 cut(s) 1524, 1597
FatI CATG 9 cut(s) 378, 391, 501, 658, 872, 1010, 1315, 1604, 3060
FauI CCCGC 1 cut(s) 558
FblI GTMKAC 1 cut(s) 1626
Fnu4HI GCNGC 4 cut(s) 1503, 2703, 3045, 3048
FokI GGATG 7 cut(s) 464, 701, 1439, 2370, 2447, 2504, 2649
FriOI GRGCYC 1 cut(s) 2450
Fsp4HI GCNGC 4 cut(s) 1503, 2703, 3045, 3048
FspBI CTAG 9 cut(s) 95, 195, 969, 975, 2034, 2108, 2427, 2504, 2741
GlaI GCGC 2 cut(s) 77, 2431
GluI GCNGC 4 cut(s) 1503, 2703, 3045, 3048
GsaI CCCAGC 2 cut(s) 757, 799
GsuI CTGGAG 3 cut(s) 1641, 2005, 2062
HaeII RGCGCY 1 cut(s) 2433
HapII CCGG 4 cut(s) 227, 641, 2387, 3031
HgaI GACGC 1 cut(s) 3050
HhaI GCGC 2 cut(s) 78, 2432
Hin1I GRCGYC 1 cut(s) 1872
Hin1II CATG 9 cut(s) 382, 395, 505, 662, 876, 1014, 1319, 1608, 3064
Hin6I GCGC 2 cut(s) 76, 2430
HinP1I GCGC 2 cut(s) 76, 2430
HincII GTYRAC 2 cut(s) 181, 2692
HindII GTYRAC 2 cut(s) 181, 2692
HindIII AAGCTT 5 cut(s) 59, 1211, 2485, 2578, 3053
HpaI GTTAAC 2 cut(s) 181, 2692
HpaII CCGG 4 cut(s) 227, 641, 2387, 3031
HphI GGTGA 8 cut(s) 280, 1181, 1348, 1435, 2216, 2390, 2900, 3076
Hpy166II GTNNAC 7 cut(s) 181, 288, 549, 1627, 1637, 1888, 2692
Hpy8I GTNNAC 7 cut(s) 181, 288, 549, 1627, 1637, 1888, 2692
HpyAV CCTTC 7 cut(s) 745, 1737, 2065, 2094, 2310, 2464, 3122
HpyCH4III ACNGT 9 cut(s) 26, 52, 178, 277, 1499, 1591, 2102, 2193, 2729
HpyCH4IV ACGT 1 cut(s) 1872
HpyCH4V TGCA 8 cut(s) 1196, 1372, 1824, 1948, 2648, 2702, 2780, 2852
HpyF10VI GCNNNNNNNGC 5 cut(s) 67, 755, 1970, 3044, 3056
HpySE526I ACGT 1 cut(s) 1872
Hsp92I GRCGYC 1 cut(s) 1872
Hsp92II CATG 9 cut(s) 382, 395, 505, 662, 876, 1014, 1319, 1608, 3064
HspAI GCGC 2 cut(s) 76, 2430
Kpn2I TCCGGA 1 cut(s) 2386
KspAI GTTAAC 2 cut(s) 181, 2692
LguI GCTCTTC 1 cut(s) 3082
LmnI GCTCC 7 cut(s) 83, 2081, 2329, 2398, 2445, 2798, 3126
Lsp1109I GCAGC 2 cut(s) 2714, 3056
LweI GCATC 9 cut(s) 309, 904, 949, 1420, 2200, 2392, 2482, 2671, 2689
MaeI CTAG 9 cut(s) 95, 195, 969, 975, 2034, 2108, 2427, 2504, 2741
MaeII ACGT 1 cut(s) 1872
MaeIII GTNAC 5 cut(s) 1450, 1652, 2551, 2717, 2750
MbiI CCGCTC 1 cut(s) 849
MfeI CAATTG 4 cut(s) 1054, 1264, 2235, 2938
MflI RGATCY 5 cut(s) 405, 1292, 1574, 1900, 2091
MhlI GDGCHC 4 cut(s) 1782, 2450, 2795, 3077
MlyI GAGTC 7 cut(s) 489, 638, 989, 1398, 1632, 1810, 2819
MmeI TCCRAC 3 cut(s) 1044, 1326, 3125
MroI TCCGGA 1 cut(s) 2386
MroXI GAANNNNTTC 1 cut(s) 1088
MseI TTAA 9 cut(s) 180, 932, 1521, 1758, 1995, 2043, 2583, 2691, 2835
MslI CAYNNNNRTG 1 cut(s) 217
MspA1I CMGCKG 1 cut(s) 3047
MspI CCGG 4 cut(s) 227, 641, 2387, 3031
MspR9I CCNGG 7 cut(s) 832, 944, 1401, 1620, 2080, 2897, 3032
MunI CAATTG 4 cut(s) 1054, 1264, 2235, 2938
MvaI CCWGG 6 cut(s) 832, 944, 1401, 1620, 2080, 2897
MvnI CGCG 1 cut(s) 1424
MwoI GCNNNNNNNGC 5 cut(s) 67, 755, 1970, 3044, 3056
NciI CCSGG 1 cut(s) 3032
NcoI CCATGG 1 cut(s) 3060
NheI GCTAGC 1 cut(s) 2107
NlaIII CATG 9 cut(s) 382, 395, 505, 662, 876, 1014, 1319, 1608, 3064
NlaIV GGNNCC 6 cut(s) 331, 462, 2077, 2190, 3015, 3136
NmeAIII GCCGAG 3 cut(s) 276, 784, 2842
NspV TTCGAA 1 cut(s) 803
OliI CACNNNNGTG 1 cut(s) 217
PaeR7I CTCGAG 2 cut(s) 666, 2137
PagI TCATGA 2 cut(s) 391, 658
PceI AGGCCT 3 cut(s) 727, 2083, 2474
PciSI GCTCTTC 1 cut(s) 3082
PcsI WCGNNNNNNNCGW 2 cut(s) 601, 1514
PdmI GAANNNNTTC 1 cut(s) 1088
PfoI TCCNGGA 1 cut(s) 942
PkrI GCNGC 4 cut(s) 1504, 2704, 3046, 3049
PleI GAGTC 7 cut(s) 488, 638, 988, 1398, 1631, 1810, 2819
PpsI GAGTC 7 cut(s) 488, 638, 988, 1398, 1631, 1810, 2819
PshAI GACNNNNGTC 1 cut(s) 1883
PshBI ATTAAT 1 cut(s) 1995
Psp124BI GAGCTC 1 cut(s) 2450
Psp6I CCWGG 6 cut(s) 830, 942, 1399, 1618, 2078, 2895
PspFI CCCAGC 2 cut(s) 753, 795
PspGI CCWGG 6 cut(s) 830, 942, 1399, 1618, 2078, 2895
PspN4I GGNNCC 6 cut(s) 331, 462, 2077, 2190, 3015, 3136
PspPI GGNCC 8 cut(s) 329, 539, 756, 1014, 1229, 1282, 1885, 3134
PspXI VCTCGAGB 2 cut(s) 666, 2137
PstI CTGCAG 1 cut(s) 1374
PstNI CAGNNNCTG 1 cut(s) 2513
PsuI RGATCY 5 cut(s) 405, 1292, 1574, 1900, 2091
RsaI GTAC 3 cut(s) 7, 161, 952
RsaNI GTAC 3 cut(s) 6, 160, 951
RseI CAYNNNNRTG 1 cut(s) 217
SacI GAGCTC 1 cut(s) 2450
SapI GCTCTTC 1 cut(s) 3082
SaqAI TTAA 9 cut(s) 180, 932, 1521, 1758, 1995, 2043, 2583, 2691, 2835
SatI GCNGC 4 cut(s) 1503, 2703, 3045, 3048
Sau96I GGNCC 8 cut(s) 329, 539, 756, 1014, 1229, 1282, 1885, 3134
SchI GAGTC 7 cut(s) 489, 638, 989, 1398, 1632, 1810, 2819
ScrFI CCNGG 7 cut(s) 832, 944, 1401, 1620, 2080, 2897, 3032
SduI GDGCHC 4 cut(s) 1782, 2450, 2795, 3077
SfaNI GCATC 9 cut(s) 309, 904, 949, 1420, 2200, 2392, 2482, 2671, 2689
SfcI CTRYAG 5 cut(s) 1108, 1224, 1370, 2311, 2559
Sfr274I CTCGAG 2 cut(s) 666, 2137
SfuI TTCGAA 1 cut(s) 803
SinI GGWCC 5 cut(s) 539, 1014, 1229, 1282, 1885
SlaI CTCGAG 2 cut(s) 666, 2137
SmiMI CAYNNNNRTG 1 cut(s) 217
SmlI CTYRAG 3 cut(s) 490, 666, 2137
SmoI CTYRAG 3 cut(s) 490, 666, 2137
SpeI ACTAGT 1 cut(s) 194
SseBI AGGCCT 3 cut(s) 727, 2083, 2474
SsiI CCGC 6 cut(s) 565, 847, 1334, 1424, 1502, 3047
SspI AATATT 3 cut(s) 1483, 1726, 2176
SspMI CTAG 9 cut(s) 95, 195, 969, 975, 2034, 2108, 2427, 2504, 2741
SstI GAGCTC 1 cut(s) 2450
StuI AGGCCT 3 cut(s) 727, 2083, 2474
StyD4I CCNGG 7 cut(s) 830, 942, 1399, 1618, 2078, 2895, 3030
StyI CCWWGG 7 cut(s) 401, 464, 1446, 1881, 2214, 2420, 3060
TaaI ACNGT 9 cut(s) 26, 52, 178, 277, 1499, 1591, 2102, 2193, 2729
TaiI ACGT 1 cut(s) 1875
TaqI TCGA 7 cut(s) 604, 667, 803, 1046, 1075, 1707, 2138
TaqII GACCGA 1 cut(s) 1528
TatI WGTACW 1 cut(s) 5
TauI GCSGC 2 cut(s) 1505, 3050
Tru1I TTAA 9 cut(s) 180, 932, 1521, 1758, 1995, 2043, 2583, 2691, 2835
Tru9I TTAA 9 cut(s) 180, 932, 1521, 1758, 1995, 2043, 2583, 2691, 2835
TscAI CASTG 9 cut(s) 181, 476, 541, 1171, 1379, 1895, 1985, 2248, 2734
TseI GCWGC 2 cut(s) 2702, 3044
TspDTI ATGAA 5 cut(s) 490, 647, 689, 2543, 3104
TspGWI ACGGA 2 cut(s) 1705, 2411
TspRI CASTG 9 cut(s) 181, 476, 541, 1171, 1379, 1895, 1985, 2248, 2734
VpaK11BI GGWCC 5 cut(s) 539, 1014, 1229, 1282, 1885
VspI ATTAAT 1 cut(s) 1995
XagI CCTNNNNNAGG 1 cut(s) 669
XapI RAATTY 7 cut(s) 262, 485, 887, 1085, 1323, 2863, 2946
XbaI TCTAGA 1 cut(s) 968
XhoI CTCGAG 2 cut(s) 666, 2137
XmiI GTMKAC 1 cut(s) 1626
XmnI GAANNNNTTC 1 cut(s) 1088
XspI CTAG 9 cut(s) 95, 195, 969, 975, 2034, 2108, 2427, 2504, 2741
ZraI GACGTC 1 cut(s) 1873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.