Rh5BG395400

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000093
Physical Location & Seq
Forward (+)
63741943 .. 63743239
1297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG395400.1

Sequence Viewer

Length: 456 bp
ATGCCACTTGGAACTCTGAGTCTTTGTGTTGTGGTCTTGCTGAGCTTCTCAGAGATTCTTCAAGTACTTTTCTCAATGGTGTGGTCTCAGTGGGGAAGGCTACCTCGGCGGAGGCGGCGGCGGCTCAAGCGGTTTCTTCTTGGCCTCAATTTGGCAAAAACTGAGTCCGTTCTTTCTTTCTCTCTTGAAGCTGATTGTCTCCCCTTAATCTCAGCTTTGAAATCCTCTTTGGGATCGGTCTCTTGGTCTACACTCTCTTGGTTTCAACAGATCAAGTCTTTGGCTGATTCTTTCTCTTCTGTAAACTGGTCTTGGATCAGTAGGGAAGCAAATGTGGCAGCAGATGTTGCTGCTCACCTTGCTCCAGGACTGGAGAGTGTGTTGGATTGGTTTCTGAACCCACCTCCTTCCTTGCTTCGTGTACTTCAATCAGATGCGGTGGCAACTCCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

151

Amino Acids

16.77

Weight (kDa)

9.68

Isoelectric Point (pI)

60.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 45 - 120 2.2e-09 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 248
AciI CCGC 6 cut(s) 109, 115, 118, 121, 130, 437
AclWI GGATC 2 cut(s) 241, 323
AfaI GTAC 2 cut(s) 66, 423
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 5 cut(s) 62, 188, 220, 266, 428
AjnI CCWGG 1 cut(s) 364
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 45, 191, 215
AluI AGCT 3 cut(s) 45, 191, 215
Alw26I GTCTC 3 cut(s) 90, 203, 244
AlwI GGATC 2 cut(s) 241, 323
AoxI GGCC 1 cut(s) 142
ApeKI GCWGC 2 cut(s) 338, 350
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AsuHPI GGTGA 1 cut(s) 347
BbvI GCAGC 2 cut(s) 337, 350
BciT130I CCWGG 1 cut(s) 366
BcoDI GTCTC 3 cut(s) 90, 203, 244
BisI GCNGC 5 cut(s) 116, 119, 122, 339, 351
BlpI GCTNAGC 1 cut(s) 41
BlsI GCNGC 5 cut(s) 117, 120, 123, 340, 352
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 366
BmrFI CCNGG 1 cut(s) 366
BmsI GCATC 1 cut(s) 424
BpmI CTGGAG 2 cut(s) 348, 392
Bpu1102I GCTNAGC 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 110
BsaI GGTCTC 2 cut(s) 90, 244
BsaJI CCNNGG 1 cut(s) 104
BsaXI ACNNNNNCTCC 2 cut(s) 365, 395
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse1I ACTGG 2 cut(s) 311, 375
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMII CTCAG 6 cut(s) 8, 32, 63, 101, 153, 225
BseNI ACTGG 2 cut(s) 311, 375
BseXI GCAGC 2 cut(s) 337, 350
BshFI GGCC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 3 cut(s) 90, 203, 244
BsnI GGCC 1 cut(s) 144
Bso31I GGTCTC 2 cut(s) 90, 244
Bsp143I GATC 3 cut(s) 233, 270, 315
Bsp1720I GCTNAGC 1 cut(s) 41
BspACI CCGC 6 cut(s) 109, 115, 118, 121, 130, 437
BspANI GGCC 1 cut(s) 144
BspCNI CTCAG 6 cut(s) 9, 33, 62, 100, 154, 224
BspPI GGATC 2 cut(s) 241, 323
BspTNI GGTCTC 2 cut(s) 90, 244
BsrI ACTGG 2 cut(s) 311, 375
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 3 cut(s) 233, 270, 315
Bst2UI CCWGG 1 cut(s) 366
Bst6I CTCTTC 1 cut(s) 301
BstAPI GCANNNNNTGC 1 cut(s) 347
BstDEI CTNAG 6 cut(s) 17, 41, 49, 87, 162, 211
BstKTI GATC 3 cut(s) 236, 273, 318
BstMAI GTCTC 3 cut(s) 90, 203, 244
BstMBI GATC 3 cut(s) 233, 270, 315
BstMWI GCNNNNNNNGC 7 cut(s) 106, 115, 121, 127, 335, 347, 359
BstNI CCWGG 1 cut(s) 366
BstSCI CCNGG 1 cut(s) 364
BstV1I GCAGC 2 cut(s) 337, 350
BsuRI GGCC 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 95
Csp6I GTAC 2 cut(s) 65, 422
CviJI RGCY 7 cut(s) 45, 100, 124, 144, 191, 215, 284
CviKI_1 RGCY 7 cut(s) 45, 100, 124, 144, 191, 215, 284
CviQI GTAC 2 cut(s) 65, 422
DdeI CTNAG 6 cut(s) 17, 41, 49, 87, 162, 211
DpnI GATC 3 cut(s) 235, 272, 317
DpnII GATC 3 cut(s) 233, 270, 315
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
EciI GGCGGA 1 cut(s) 124
Eco31I GGTCTC 2 cut(s) 90, 244
EcoRII CCWGG 1 cut(s) 364
FblI GTMKAC 1 cut(s) 248
Fnu4HI GCNGC 5 cut(s) 116, 119, 122, 339, 351
Fsp4HI GCNGC 5 cut(s) 116, 119, 122, 339, 351
GluI GCNGC 5 cut(s) 116, 119, 122, 339, 351
GsuI CTGGAG 2 cut(s) 348, 392
HaeIII GGCC 1 cut(s) 144
HinfI GANTC 4 cut(s) 19, 55, 164, 287
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 3 cut(s) 249, 304, 422
Hpy188I TCNGA 4 cut(s) 18, 52, 396, 433
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 3 cut(s) 249, 304, 422
HpyAV CCTTC 2 cut(s) 90, 417
HpyF10VI GCNNNNNNNGC 7 cut(s) 106, 115, 121, 127, 335, 347, 359
HpyF3I CTNAG 6 cut(s) 17, 41, 49, 87, 162, 211
Kzo9I GATC 3 cut(s) 233, 270, 315
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 4 cut(s) 292, 351, 356, 378
Lsp1109I GCAGC 2 cut(s) 337, 350
LweI GCATC 1 cut(s) 424
MalI GATC 3 cut(s) 235, 272, 317
MboI GATC 3 cut(s) 233, 270, 315
MboII GAAGA 3 cut(s) 50, 128, 288
MluCI AATT 1 cut(s) 148
MlyI GAGTC 2 cut(s) 28, 173
MmeI TCCRAC 1 cut(s) 363
MnlI CCTC 5 cut(s) 105, 114, 155, 235, 414
MseI TTAA 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 366
MvaI CCWGG 1 cut(s) 366
MwoI GCNNNNNNNGC 7 cut(s) 106, 115, 121, 127, 335, 347, 359
NdeII GATC 3 cut(s) 233, 270, 315
NmeAIII GCCGAG 1 cut(s) 85
PfeI GAWTC 2 cut(s) 55, 287
PfoI TCCNGGA 1 cut(s) 364
PkrI GCNGC 5 cut(s) 117, 120, 123, 340, 352
PleI GAGTC 2 cut(s) 27, 172
PpsI GAGTC 2 cut(s) 27, 172
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
RsaI GTAC 2 cut(s) 66, 423
RsaNI GTAC 2 cut(s) 65, 422
SaqAI TTAA 1 cut(s) 206
SatI GCNGC 5 cut(s) 116, 119, 122, 339, 351
Sau3AI GATC 3 cut(s) 233, 270, 315
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 2 cut(s) 28, 173
ScrFI CCNGG 1 cut(s) 366
SetI ASST 7 cut(s) 47, 106, 193, 217, 360, 406, 454
SfaNI GCATC 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 1 cut(s) 148
SsiI CCGC 6 cut(s) 109, 115, 118, 121, 130, 437
StyD4I CCNGG 1 cut(s) 364
TaqII GACCGA 1 cut(s) 226
TasI AATT 1 cut(s) 148
TatI WGTACW 2 cut(s) 64, 421
TauI GCSGC 3 cut(s) 118, 121, 124
TfiI GAWTC 2 cut(s) 55, 287
Tru1I TTAA 1 cut(s) 206
Tru9I TTAA 1 cut(s) 206
TscAI CASTG 1 cut(s) 95
TseI GCWGC 2 cut(s) 338, 350
TspGWI ACGGA 1 cut(s) 157
TspRI CASTG 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 248
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.