Rorug02G0298800

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000093
Physical Location & Seq
Forward (+)
33333536 .. 33334660
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0298800.1

Sequence Viewer

Length: 885 bp
ATGAAAATGGTCACCGGGAAATCAAGCGACCCAGAGCGTCTGCAGCAGCTGAAGGCCTTTGACGACTCCAAAACTGGTGTCAAAGGGATCGTCGATGCCGGAATCACCAAACTCCCACCAATTTTCGTCCGTCCAACTAAAGATCCCTCCGTCGTTTGCGACCGTACGGTTTCAGGTCATTTCAGTATCCCAGTGGTGGATCTGGCTGAATATAACGGAAGGCGTGCTGAGGTGATCGGCCAAGTCCGGAGGGCCTCAGAGAGCTATGGGTTCTTCCAGCTGGTGAACCATGGGATACCCAAGAGAGTGATGGAGGAGATGATGGAGGCGGCGCGTGTGTTTCACGAGCTGCCGAGGGAGGAGAAGGCGGAGTACTATAGTAGGGAGATGGGGATGAAGGTCAAGTACTACTCTAGCAGTACCATGTATGATTTGATGTTTGCTGATTGGAAGGACACTTTGCAGTGTATCATAAGTGACGAGCAGTTTGATCCTCAACAAATTCCTCTCGTTTGCAGAGAGATAACTATGGAGTACTCTAAGCACGTTCACAAATTAGGTGTCACTTTGTTTGAATTTATATCTGAGGCGCTTGGGCTCAAACCTAATCACCTCAAAAACTTGGATATCACAAAGGAGCATATGATTCTCAGTCATTACTATCCACCATGCCCAGAGCCTGAAGTGGCTATTGGCACTGTCGAACACTCAGATCCTGATTTTATGACCATCCTACATCAAGATCAAATTGGTGGACTTCAAGTTTTGTACCAAAATCAGTGGATTGATGTTCTTTCTGTACCTGGAGCTCTAGTCACTACAAAAAATAATTGCAACGGCTACCCCGTTTTGCGTCGGCACCCTTTTGCCGTCGCAAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

294

Amino Acids

33.48

Weight (kDa)

6.13

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 63 - 166 8.7e-22 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 213 - 277 3.7e-16 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 858
AccII CGCG 1 cut(s) 334
AccIII TCCGGA 1 cut(s) 246
AciI CCGC 2 cut(s) 329, 368
AclWI GGATC 5 cut(s) 95, 137, 207, 485, 707
AcoI YGGCCR 1 cut(s) 238
AcsI RAATTY 2 cut(s) 501, 575
AcuI CTGAAG 2 cut(s) 71, 702
AfaI GTAC 7 cut(s) 166, 374, 407, 421, 536, 770, 801
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 2 cut(s) 575, 761
AjnI CCWGG 1 cut(s) 802
AjuI GAANNNNNNNTTGG 2 cut(s) 675, 707
AluBI AGCT 5 cut(s) 49, 264, 280, 349, 809
AluI AGCT 5 cut(s) 49, 264, 280, 349, 809
Alw21I GWGCWC 1 cut(s) 811
AlwI GGATC 5 cut(s) 95, 137, 207, 485, 707
AlwNI CAGNNNCTG 3 cut(s) 49, 680, 716
Aor13HI TCCGGA 1 cut(s) 246
AoxI GGCC 3 cut(s) 54, 238, 252
ApeKI GCWGC 3 cut(s) 43, 46, 349
ApoI RAATTY 2 cut(s) 501, 575
ArsI GACNNNNNNTTYG 8 cut(s) 63, 75, 95, 107, 470, 502, 546, 578
AspLEI GCGC 2 cut(s) 334, 592
AspS9I GGNCC 1 cut(s) 252
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 5 cut(s) 4, 97, 244, 295, 602
BanI GGYRCC 1 cut(s) 858
BanII GRGCYC 2 cut(s) 600, 811
BarI GAAGNNNNNNTAC 4 cut(s) 356, 388, 389, 421
BauI CACGAG 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 811
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 3 cut(s) 55, 58, 336
BccI CCATC 4 cut(s) 304, 316, 382, 737
BceAI ACGGC 2 cut(s) 853, 854
BciT130I CCWGG 1 cut(s) 804
BciVI GTATCC 2 cut(s) 197, 288
BcnI CCSGG 1 cut(s) 16
BfaI CTAG 2 cut(s) 414, 812
BfmI CTRYAG 2 cut(s) 41, 376
BfoI RGCGCY 1 cut(s) 593
BfuI GTATCC 2 cut(s) 197, 288
BisI GCNGC 4 cut(s) 44, 47, 330, 350
BlsI GCNGC 4 cut(s) 45, 48, 331, 351
BmcAI AGTACT 3 cut(s) 374, 407, 536
Bme1390I CCNGG 2 cut(s) 16, 804
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 860
BmrFI CCNGG 2 cut(s) 16, 804
BmrI ACTGGG 1 cut(s) 185
BmsI GCATC 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 825
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 16
BsaJI CCNNGG 2 cut(s) 289, 353
BsaWI WCCGGW 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 798, 828
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 2 cut(s) 79, 191
BseAI TCCGGA 1 cut(s) 246
BseBI CCWGG 1 cut(s) 804
BseDI CCNNGG 2 cut(s) 289, 353
BseGI GGATG 2 cut(s) 399, 729
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 5 cut(s) 219, 270, 576, 664, 723
BseNI ACTGG 2 cut(s) 79, 191
BseRI GAGGAG 2 cut(s) 329, 374
BseXI GCAGC 3 cut(s) 55, 58, 336
Bsh1236I CGCG 1 cut(s) 334
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 3 cut(s) 56, 240, 254
BshNI GGYRCC 1 cut(s) 858
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 1 cut(s) 811
BsiSI CCGG 3 cut(s) 15, 99, 247
BsiWI CGTACG 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 196
BsnI GGCC 3 cut(s) 56, 240, 254
Bsp1286I GDGCHC 2 cut(s) 600, 811
Bsp13I TCCGGA 1 cut(s) 246
Bsp143I GATC 7 cut(s) 87, 142, 199, 234, 490, 712, 742
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 2 cut(s) 329, 368
BspANI GGCC 3 cut(s) 56, 240, 254
BspCNI CTCAG 5 cut(s) 220, 269, 577, 663, 722
BspEI TCCGGA 1 cut(s) 246
BspFNI CGCG 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 860
BspMAI CTGCAG 1 cut(s) 45
BspPI GGATC 5 cut(s) 95, 137, 207, 485, 707
BspT107I GGYRCC 1 cut(s) 858
BsrI ACTGG 2 cut(s) 79, 191
BssECI CCNNGG 2 cut(s) 289, 353
BssMI GATC 7 cut(s) 87, 142, 199, 234, 490, 712, 742
BssSI CACGAG 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 804
Bst4CI ACNGT 3 cut(s) 164, 169, 700
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 6 cut(s) 228, 256, 540, 585, 650, 709
BstDSI CCRYGG 1 cut(s) 289
BstEII GGTNACC 1 cut(s) 10
BstF5I GGATG 2 cut(s) 399, 729
BstFNI CGCG 1 cut(s) 334
BstH2I RGCGCY 1 cut(s) 593
BstHHI GCGC 2 cut(s) 334, 592
BstKTI GATC 7 cut(s) 90, 145, 202, 237, 493, 715, 745
BstMBI GATC 7 cut(s) 87, 142, 199, 234, 490, 712, 742
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 804
BstPI GGTNACC 1 cut(s) 10
BstSCI CCNGG 2 cut(s) 14, 802
BstSFI CTRYAG 2 cut(s) 41, 376
BstUI CGCG 1 cut(s) 334
BstV1I GCAGC 3 cut(s) 55, 58, 336
BstX2I RGATCY 3 cut(s) 142, 199, 712
BstYI RGATCY 3 cut(s) 142, 199, 712
BsuI GTATCC 2 cut(s) 197, 288
BsuRI GGCC 3 cut(s) 56, 240, 254
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 2 cut(s) 399, 729
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 4 cut(s) 198, 470, 696, 785
Cac8I GCNNGC 1 cut(s) 225
CaiI CAGNNNCTG 3 cut(s) 49, 680, 716
CfoI GCGC 2 cut(s) 334, 592
Cfr13I GGNCC 1 cut(s) 252
CseI GACGC 2 cut(s) 26, 842
Csp6I GTAC 7 cut(s) 165, 373, 406, 420, 535, 769, 800
CspCI CAANNNNNGTGG 2 cut(s) 761, 796
CviAII CATG 3 cut(s) 290, 424, 669
CviQI GTAC 7 cut(s) 165, 373, 406, 420, 535, 769, 800
DdeI CTNAG 6 cut(s) 228, 256, 540, 585, 650, 709
DpnI GATC 7 cut(s) 89, 144, 201, 236, 492, 714, 744
DpnII GATC 7 cut(s) 87, 142, 199, 234, 490, 712, 742
EaeI YGGCCR 1 cut(s) 238
EciI GGCGGA 1 cut(s) 383
Ecl136II GAGCTC 1 cut(s) 809
Eco130I CCWWGG 1 cut(s) 289
Eco147I AGGCCT 1 cut(s) 56
Eco24I GRGCYC 2 cut(s) 600, 811
Eco32I GATATC 1 cut(s) 628
Eco53kI GAGCTC 1 cut(s) 809
Eco57I CTGAAG 2 cut(s) 71, 702
Eco91I GGTNACC 1 cut(s) 10
EcoICRI GAGCTC 1 cut(s) 809
EcoO109I RGGNCCY 1 cut(s) 252
EcoO65I GGTNACC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 802
EcoRV GATATC 1 cut(s) 628
EcoT14I CCWWGG 1 cut(s) 289
EcoT38I GRGCYC 2 cut(s) 600, 811
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 3 cut(s) 293, 427, 672
FatI CATG 3 cut(s) 289, 423, 668
FauNDI CATATG 1 cut(s) 642
Fnu4HI GCNGC 4 cut(s) 44, 47, 330, 350
FokI GGATG 2 cut(s) 406, 716
FriOI GRGCYC 2 cut(s) 600, 811
Fsp4HI GCNGC 4 cut(s) 44, 47, 330, 350
FspBI CTAG 2 cut(s) 414, 812
GlaI GCGC 2 cut(s) 333, 591
GluI GCNGC 4 cut(s) 44, 47, 330, 350
GsuI CTGGAG 1 cut(s) 825
HaeII RGCGCY 1 cut(s) 593
HaeIII GGCC 3 cut(s) 56, 240, 254
HapII CCGG 3 cut(s) 15, 99, 247
HgaI GACGC 2 cut(s) 26, 842
HhaI GCGC 2 cut(s) 334, 592
Hin1II CATG 3 cut(s) 293, 427, 672
Hin6I GCGC 2 cut(s) 332, 590
HinP1I GCGC 2 cut(s) 332, 590
HinfI GANTC 3 cut(s) 65, 102, 646
HpaII CCGG 3 cut(s) 15, 99, 247
HphI GGTGA 5 cut(s) 4, 97, 244, 295, 602
Hpy166II GTNNAC 3 cut(s) 286, 550, 755
Hpy188I TCNGA 3 cut(s) 259, 586, 712
Hpy188III TCNNGA 4 cut(s) 247, 344, 716, 740
Hpy8I GTNNAC 3 cut(s) 286, 550, 755
Hpy99I CGWCG 4 cut(s) 95, 155, 858, 875
HpyAV CCTTC 5 cut(s) 46, 213, 358, 391, 445
HpyCH4III ACNGT 3 cut(s) 164, 169, 700
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 4 cut(s) 43, 463, 516, 834
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 6 cut(s) 228, 256, 540, 585, 650, 709
HpySE526I ACGT 1 cut(s) 546
Hsp92II CATG 3 cut(s) 293, 427, 672
HspAI GCGC 2 cut(s) 332, 590
Kpn2I TCCGGA 1 cut(s) 246
Kzo9I GATC 7 cut(s) 87, 142, 199, 234, 490, 712, 742
LmnI GCTCC 2 cut(s) 637, 806
Lsp1109I GCAGC 3 cut(s) 55, 58, 336
LweI GCATC 1 cut(s) 85
MaeI CTAG 2 cut(s) 414, 812
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 4 cut(s) 10, 476, 562, 814
MalI GATC 7 cut(s) 89, 144, 201, 236, 492, 714, 744
MboI GATC 7 cut(s) 87, 142, 199, 234, 490, 712, 742
MboII GAAGA 1 cut(s) 265
MflI RGATCY 3 cut(s) 142, 199, 712
MhlI GDGCHC 2 cut(s) 600, 811
MluCI AATT 7 cut(s) 120, 501, 554, 575, 747, 829, 880
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 158
MroI TCCGGA 1 cut(s) 246
MspA1I CMGCKG 2 cut(s) 49, 280
MspI CCGG 3 cut(s) 15, 99, 247
MspR9I CCNGG 2 cut(s) 16, 804
MvaI CCWGG 1 cut(s) 804
MvnI CGCG 1 cut(s) 334
MwoI GCNNNNNNNGC 1 cut(s) 43
NciI CCSGG 1 cut(s) 16
NcoI CCATGG 1 cut(s) 289
NdeI CATATG 1 cut(s) 642
NdeII GATC 7 cut(s) 87, 142, 199, 234, 490, 712, 742
NlaIII CATG 3 cut(s) 293, 427, 672
NlaIV GGNNCC 1 cut(s) 860
NmeAIII GCCGAG 1 cut(s) 378
NmuCI GTSAC 4 cut(s) 10, 476, 562, 814
PceI AGGCCT 1 cut(s) 56
PcsI WCGNNNNNNNCGW 1 cut(s) 843
PfeI GAWTC 2 cut(s) 102, 646
Pfl23II CGTACG 1 cut(s) 164
PkrI GCNGC 4 cut(s) 45, 48, 331, 351
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 811
Psp6I CCWGG 1 cut(s) 802
PspEI GGTNACC 1 cut(s) 10
PspGI CCWGG 1 cut(s) 802
PspLI CGTACG 1 cut(s) 164
PspN4I GGNNCC 1 cut(s) 860
PspPI GGNCC 1 cut(s) 252
PstI CTGCAG 1 cut(s) 45
PstNI CAGNNNCTG 3 cut(s) 49, 680, 716
PsuI RGATCY 3 cut(s) 142, 199, 712
PvuII CAGCTG 2 cut(s) 49, 280
RsaI GTAC 7 cut(s) 166, 374, 407, 421, 536, 770, 801
RsaNI GTAC 7 cut(s) 165, 373, 406, 420, 535, 769, 800
SacI GAGCTC 1 cut(s) 811
SatI GCNGC 4 cut(s) 44, 47, 330, 350
Sau3AI GATC 7 cut(s) 87, 142, 199, 234, 490, 712, 742
Sau96I GGNCC 1 cut(s) 252
ScaI AGTACT 3 cut(s) 374, 407, 536
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 2 cut(s) 16, 804
SduI GDGCHC 2 cut(s) 600, 811
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 2 cut(s) 41, 376
Sse9I AATT 7 cut(s) 120, 501, 554, 575, 747, 829, 880
SseBI AGGCCT 1 cut(s) 56
SsiI CCGC 2 cut(s) 329, 368
SspMI CTAG 2 cut(s) 414, 812
SstI GAGCTC 1 cut(s) 811
StuI AGGCCT 1 cut(s) 56
StyD4I CCNGG 2 cut(s) 14, 802
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 164, 169, 700
TaiI ACGT 1 cut(s) 549
TaqI TCGA 2 cut(s) 93, 702
TasI AATT 7 cut(s) 120, 501, 554, 575, 747, 829, 880
TatI WGTACW 3 cut(s) 372, 405, 534
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 2 cut(s) 102, 646
TscAI CASTG 4 cut(s) 198, 470, 703, 785
TseFI GTSAC 4 cut(s) 10, 476, 562, 814
TseI GCWGC 3 cut(s) 43, 46, 349
Tsp45I GTSAC 4 cut(s) 10, 476, 562, 814
TspDTI ATGAA 2 cut(s) 17, 410
TspGWI ACGGA 3 cut(s) 119, 139, 231
TspRI CASTG 4 cut(s) 198, 470, 703, 785
XapI RAATTY 2 cut(s) 501, 575
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XspI CTAG 2 cut(s) 414, 812
ZrmI AGTACT 3 cut(s) 374, 407, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.