Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF3339 | PF11820 | 3 - 68 | 3.4e-33 | Protein of unknown function (DUF3339) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 8, 32, 98 |
| AcoI | YGGCCR | 1 cut(s) | 81 |
| AfaI | GTAC | 1 cut(s) | 141 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 86, 90 |
| AgeI | ACCGGT | 1 cut(s) | 19 |
| AjnI | CCWGG | 1 cut(s) | 58 |
| AoxI | GGCC | 1 cut(s) | 81 |
| ApeKI | GCWGC | 1 cut(s) | 163 |
| AsiGI | ACCGGT | 1 cut(s) | 19 |
| AspS9I | GGNCC | 1 cut(s) | 17 |
| AsuHPI | GGTGA | 2 cut(s) | 34, 160 |
| AvaII | GGWCC | 1 cut(s) | 17 |
| BanII | GRGCYC | 1 cut(s) | 66 |
| BbsI | GAAGAC | 1 cut(s) | 116 |
| BbvI | GCAGC | 1 cut(s) | 150 |
| BccI | CCATC | 1 cut(s) | 179 |
| BciT130I | CCWGG | 1 cut(s) | 60 |
| BfmI | CTRYAG | 1 cut(s) | 186 |
| BisI | GCNGC | 1 cut(s) | 164 |
| BlsI | GCNGC | 1 cut(s) | 165 |
| Bme1390I | CCNGG | 1 cut(s) | 60 |
| Bme18I | GGWCC | 1 cut(s) | 17 |
| BmgT120I | GGNCC | 1 cut(s) | 17 |
| BmiI | GGNNCC | 1 cut(s) | 18 |
| BmrFI | CCNGG | 1 cut(s) | 60 |
| BpiI | GAAGAC | 1 cut(s) | 116 |
| BsaJI | CCNNGG | 2 cut(s) | 59, 84 |
| BsaWI | WCCGGW | 1 cut(s) | 19 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 86, 90 |
| Bse118I | RCCGGY | 1 cut(s) | 19 |
| Bse1I | ACTGG | 1 cut(s) | 211 |
| BseBI | CCWGG | 1 cut(s) | 60 |
| BseDI | CCNNGG | 2 cut(s) | 59, 84 |
| BseGI | GGATG | 1 cut(s) | 171 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 86, 90 |
| BseNI | ACTGG | 1 cut(s) | 211 |
| BseXI | GCAGC | 1 cut(s) | 150 |
| BshFI | GGCC | 1 cut(s) | 83 |
| BshTI | ACCGGT | 1 cut(s) | 19 |
| BsiSI | CCGG | 2 cut(s) | 20, 80 |
| BslFI | GGGAC | 1 cut(s) | 30 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 86, 90 |
| BsmFI | GGGAC | 1 cut(s) | 30 |
| BsnI | GGCC | 1 cut(s) | 83 |
| Bsp1286I | GDGCHC | 1 cut(s) | 66 |
| Bsp1407I | TGTACA | 1 cut(s) | 139 |
| Bsp143I | GATC | 1 cut(s) | 24 |
| BspACI | CCGC | 3 cut(s) | 8, 32, 98 |
| BspANI | GGCC | 1 cut(s) | 83 |
| BspLI | GGNNCC | 1 cut(s) | 18 |
| BsrFI | RCCGGY | 1 cut(s) | 19 |
| BsrGI | TGTACA | 1 cut(s) | 139 |
| BsrI | ACTGG | 1 cut(s) | 211 |
| BssAI | RCCGGY | 1 cut(s) | 19 |
| BssECI | CCNNGG | 2 cut(s) | 59, 84 |
| BssMI | GATC | 1 cut(s) | 24 |
| BssT1I | CCWWGG | 1 cut(s) | 84 |
| Bst2UI | CCWGG | 1 cut(s) | 60 |
| BstAUI | TGTACA | 1 cut(s) | 139 |
| BstF5I | GGATG | 1 cut(s) | 171 |
| BstKTI | GATC | 1 cut(s) | 27 |
| BstMBI | GATC | 1 cut(s) | 24 |
| BstNI | CCWGG | 1 cut(s) | 60 |
| BstSCI | CCNGG | 1 cut(s) | 58 |
| BstSFI | CTRYAG | 1 cut(s) | 186 |
| BstV1I | GCAGC | 1 cut(s) | 150 |
| BstV2I | GAAGAC | 1 cut(s) | 116 |
| BsuRI | GGCC | 1 cut(s) | 83 |
| BtsCI | GGATG | 1 cut(s) | 171 |
| Cfr10I | RCCGGY | 1 cut(s) | 19 |
| Cfr13I | GGNCC | 1 cut(s) | 17 |
| Csp6I | GTAC | 1 cut(s) | 140 |
| CspAI | ACCGGT | 1 cut(s) | 19 |
| CviAII | CATG | 1 cut(s) | 67 |
| CviJI | RGCY | 4 cut(s) | 64, 83, 163, 210 |
| CviKI_1 | RGCY | 4 cut(s) | 64, 83, 163, 210 |
| CviQI | GTAC | 1 cut(s) | 140 |
| DpnI | GATC | 1 cut(s) | 26 |
| DpnII | GATC | 1 cut(s) | 24 |
| EaeI | YGGCCR | 1 cut(s) | 81 |
| EciI | GGCGGA | 2 cut(s) | 23, 113 |
| Eco130I | CCWWGG | 1 cut(s) | 84 |
| Eco24I | GRGCYC | 1 cut(s) | 66 |
| Eco47I | GGWCC | 1 cut(s) | 17 |
| EcoRII | CCWGG | 1 cut(s) | 58 |
| EcoT14I | CCWWGG | 1 cut(s) | 84 |
| EcoT38I | GRGCYC | 1 cut(s) | 66 |
| ErhI | CCWWGG | 1 cut(s) | 84 |
| FaeI | CATG | 1 cut(s) | 70 |
| FaiI | YATR | 6 cut(s) | 68, 113, 134, 188, 198, 204 |
| FaqI | GGGAC | 1 cut(s) | 30 |
| FatI | CATG | 1 cut(s) | 66 |
| Fnu4HI | GCNGC | 1 cut(s) | 164 |
| FokI | GGATG | 1 cut(s) | 158 |
| FriOI | GRGCYC | 1 cut(s) | 66 |
| Fsp4HI | GCNGC | 1 cut(s) | 164 |
| GluI | GCNGC | 1 cut(s) | 164 |
| HaeIII | GGCC | 1 cut(s) | 83 |
| HapII | CCGG | 2 cut(s) | 20, 80 |
| Hin1II | CATG | 1 cut(s) | 70 |
| HincII | GTYRAC | 1 cut(s) | 54 |
| HindII | GTYRAC | 1 cut(s) | 54 |
| HinfI | GANTC | 2 cut(s) | 55, 76 |
| HpaII | CCGG | 2 cut(s) | 20, 80 |
| HphI | GGTGA | 2 cut(s) | 34, 160 |
| Hpy166II | GTNNAC | 2 cut(s) | 54, 142 |
| Hpy188I | TCNGA | 1 cut(s) | 75 |
| Hpy8I | GTNNAC | 2 cut(s) | 54, 142 |
| HpyCH4V | TGCA | 1 cut(s) | 115 |
| Hsp92II | CATG | 1 cut(s) | 70 |
| Kzo9I | GATC | 1 cut(s) | 24 |
| LpnPI | CCDG | 5 cut(s) | 33, 45, 72, 93, 192 |
| Lsp1109I | GCAGC | 1 cut(s) | 150 |
| MalI | GATC | 1 cut(s) | 26 |
| MboI | GATC | 1 cut(s) | 24 |
| MboII | GAAGA | 1 cut(s) | 116 |
| MhlI | GDGCHC | 1 cut(s) | 66 |
| MlyI | GAGTC | 1 cut(s) | 49 |
| MnlI | CCTC | 4 cut(s) | 84, 139, 158, 185 |
| MspI | CCGG | 2 cut(s) | 20, 80 |
| MspR9I | CCNGG | 1 cut(s) | 60 |
| MvaI | CCWGG | 1 cut(s) | 60 |
| NdeII | GATC | 1 cut(s) | 24 |
| NlaIII | CATG | 1 cut(s) | 70 |
| NlaIV | GGNNCC | 1 cut(s) | 18 |
| PfeI | GAWTC | 1 cut(s) | 76 |
| PinAI | ACCGGT | 1 cut(s) | 19 |
| PkrI | GCNGC | 1 cut(s) | 165 |
| PleI | GAGTC | 1 cut(s) | 49 |
| PpsI | GAGTC | 1 cut(s) | 49 |
| Psp6I | CCWGG | 1 cut(s) | 58 |
| PspGI | CCWGG | 1 cut(s) | 58 |
| PspN4I | GGNNCC | 1 cut(s) | 18 |
| PspPI | GGNCC | 1 cut(s) | 17 |
| RsaI | GTAC | 1 cut(s) | 141 |
| RsaNI | GTAC | 1 cut(s) | 140 |
| SatI | GCNGC | 1 cut(s) | 164 |
| Sau3AI | GATC | 1 cut(s) | 24 |
| Sau96I | GGNCC | 1 cut(s) | 17 |
| SchI | GAGTC | 1 cut(s) | 49 |
| ScrFI | CCNGG | 1 cut(s) | 60 |
| SduI | GDGCHC | 1 cut(s) | 66 |
| SetI | ASST | 1 cut(s) | 193 |
| SfcI | CTRYAG | 1 cut(s) | 186 |
| SgeI | CNNG | 8 cut(s) | 32, 71, 72, 79, 92, 97, 132, 172 |
| SinI | GGWCC | 1 cut(s) | 17 |
| SsiI | CCGC | 3 cut(s) | 8, 32, 98 |
| StyD4I | CCNGG | 1 cut(s) | 58 |
| StyI | CCWWGG | 1 cut(s) | 84 |
| TatI | WGTACW | 1 cut(s) | 139 |
| TfiI | GAWTC | 1 cut(s) | 76 |
| TseI | GCWGC | 1 cut(s) | 163 |
| TspDTI | ATGAA | 1 cut(s) | 185 |
| VpaK11BI | GGWCC | 1 cut(s) | 17 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 91 |