Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 73 - 127 | 1.1e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 114 |
| AciI | CCGC | 3 cut(s) | 4, 30, 368 |
| AclWI | GGATC | 1 cut(s) | 341 |
| AcoI | YGGCCR | 1 cut(s) | 369 |
| AcsI | RAATTY | 2 cut(s) | 38, 287 |
| AfaI | GTAC | 1 cut(s) | 171 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 21, 387 |
| AgsI | TTSAA | 1 cut(s) | 301 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 414 |
| AhlI | ACTAGT | 1 cut(s) | 446 |
| AjnI | CCWGG | 2 cut(s) | 20, 460 |
| AluBI | AGCT | 4 cut(s) | 121, 347, 359, 376 |
| AluI | AGCT | 4 cut(s) | 121, 347, 359, 376 |
| Alw21I | GWGCWC | 1 cut(s) | 398 |
| Alw26I | GTCTC | 1 cut(s) | 116 |
| Alw44I | GTGCAC | 1 cut(s) | 394 |
| AlwI | GGATC | 1 cut(s) | 341 |
| Ama87I | CYCGRG | 1 cut(s) | 130 |
| Aor13HI | TCCGGA | 1 cut(s) | 114 |
| AoxI | GGCC | 3 cut(s) | 127, 214, 369 |
| ApaLI | GTGCAC | 1 cut(s) | 394 |
| ApeKI | GCWGC | 1 cut(s) | 365 |
| ApoI | RAATTY | 2 cut(s) | 38, 287 |
| AseI | ATTAAT | 1 cut(s) | 228 |
| AspS9I | GGNCC | 3 cut(s) | 128, 416, 464 |
| AsuHPI | GGTGA | 2 cut(s) | 167, 284 |
| AsuNHI | GCTAGC | 1 cut(s) | 376 |
| AvaI | CYCGRG | 1 cut(s) | 130 |
| AvaII | GGWCC | 2 cut(s) | 416, 464 |
| BaeGI | GKGCMC | 1 cut(s) | 398 |
| BbsI | GAAGAC | 1 cut(s) | 449 |
| Bbv12I | GWGCWC | 1 cut(s) | 398 |
| BbvI | GCAGC | 1 cut(s) | 377 |
| BccI | CCATC | 4 cut(s) | 86, 279, 321, 446 |
| BciT130I | CCWGG | 2 cut(s) | 22, 462 |
| BcoDI | GTCTC | 1 cut(s) | 116 |
| BcuI | ACTAGT | 1 cut(s) | 446 |
| BfaI | CTAG | 2 cut(s) | 377, 447 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 158 |
| BisI | GCNGC | 3 cut(s) | 31, 366, 369 |
| BlpI | GCTNAGC | 1 cut(s) | 26 |
| BlsI | GCNGC | 3 cut(s) | 32, 367, 370 |
| Bme1390I | CCNGG | 2 cut(s) | 22, 462 |
| Bme18I | GGWCC | 2 cut(s) | 416, 464 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 414 |
| BmeT110I | CYCGRG | 1 cut(s) | 130 |
| BmgT120I | GGNCC | 3 cut(s) | 128, 416, 464 |
| BmrFI | CCNGG | 2 cut(s) | 22, 462 |
| BmsI | GCATC | 1 cut(s) | 352 |
| BmtI | GCTAGC | 1 cut(s) | 380 |
| BpiI | GAAGAC | 1 cut(s) | 449 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 26 |
| BpuEI | CTTGAG | 1 cut(s) | 322 |
| BsaWI | WCCGGW | 1 cut(s) | 114 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 21, 387 |
| Bse118I | RCCGGY | 1 cut(s) | 152 |
| Bse3DI | GCAATG | 1 cut(s) | 144 |
| BseAI | TCCGGA | 1 cut(s) | 114 |
| BseBI | CCWGG | 2 cut(s) | 22, 462 |
| BseGI | GGATG | 1 cut(s) | 271 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 21, 387 |
| BseMI | GCAATG | 1 cut(s) | 144 |
| BseMII | CTCAG | 1 cut(s) | 113 |
| BseRI | GAGGAG | 1 cut(s) | 208 |
| BseSI | GKGCMC | 1 cut(s) | 398 |
| BseXI | GCAGC | 1 cut(s) | 377 |
| BshFI | GGCC | 3 cut(s) | 129, 216, 371 |
| BsiHKAI | GWGCWC | 1 cut(s) | 398 |
| BsiHKCI | CYCGRG | 1 cut(s) | 130 |
| BsiSI | CCGG | 2 cut(s) | 115, 153 |
| BslFI | GGGAC | 1 cut(s) | 113 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 21, 387 |
| BsmAI | GTCTC | 1 cut(s) | 116 |
| BsmFI | GGGAC | 1 cut(s) | 113 |
| BsmI | GAATGC | 1 cut(s) | 208 |
| BsnI | GGCC | 3 cut(s) | 129, 216, 371 |
| BsoBI | CYCGRG | 1 cut(s) | 130 |
| Bsp1286I | GDGCHC | 1 cut(s) | 398 |
| Bsp13I | TCCGGA | 1 cut(s) | 114 |
| Bsp143I | GATC | 1 cut(s) | 333 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 26 |
| BspACI | CCGC | 3 cut(s) | 4, 30, 368 |
| BspANI | GGCC | 3 cut(s) | 129, 216, 371 |
| BspCNI | CTCAG | 1 cut(s) | 114 |
| BspEI | TCCGGA | 1 cut(s) | 114 |
| BspOI | GCTAGC | 1 cut(s) | 380 |
| BspPI | GGATC | 1 cut(s) | 341 |
| BsrDI | GCAATG | 1 cut(s) | 144 |
| BsrFI | RCCGGY | 1 cut(s) | 152 |
| BssAI | RCCGGY | 1 cut(s) | 152 |
| BssMI | GATC | 1 cut(s) | 333 |
| Bst2UI | CCWGG | 2 cut(s) | 22, 462 |
| Bst4CI | ACNGT | 2 cut(s) | 64, 353 |
| BstC8I | GCNNGC | 1 cut(s) | 378 |
| BstDEI | CTNAG | 4 cut(s) | 26, 89, 122, 471 |
| BstF5I | GGATG | 1 cut(s) | 271 |
| BstKTI | GATC | 1 cut(s) | 336 |
| BstMAI | GTCTC | 1 cut(s) | 116 |
| BstMBI | GATC | 1 cut(s) | 333 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 158, 365, 377 |
| BstNI | CCWGG | 2 cut(s) | 22, 462 |
| BstSCI | CCNGG | 2 cut(s) | 20, 460 |
| BstSLI | GKGCMC | 1 cut(s) | 398 |
| BstV1I | GCAGC | 1 cut(s) | 377 |
| BstV2I | GAAGAC | 1 cut(s) | 449 |
| BstX2I | RGATCY | 1 cut(s) | 333 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 436 |
| BstYI | RGATCY | 1 cut(s) | 333 |
| BsuRI | GGCC | 3 cut(s) | 129, 216, 371 |
| BtgZI | GCGATG | 1 cut(s) | 48 |
| BtsCI | GGATG | 1 cut(s) | 271 |
| Cac8I | GCNNGC | 1 cut(s) | 378 |
| Cfr10I | RCCGGY | 1 cut(s) | 152 |
| Cfr13I | GGNCC | 3 cut(s) | 128, 416, 464 |
| Csp6I | GTAC | 1 cut(s) | 170 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 37, 72 |
| CviAII | CATG | 1 cut(s) | 430 |
| CviQI | GTAC | 1 cut(s) | 170 |
| DdeI | CTNAG | 4 cut(s) | 26, 89, 122, 471 |
| DpnI | GATC | 1 cut(s) | 335 |
| DpnII | GATC | 1 cut(s) | 333 |
| DriI | GACNNNNNGTC | 1 cut(s) | 414 |
| EaeI | YGGCCR | 1 cut(s) | 369 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 414 |
| Eco32I | GATATC | 1 cut(s) | 12 |
| Eco47I | GGWCC | 2 cut(s) | 416, 464 |
| Eco88I | CYCGRG | 1 cut(s) | 130 |
| EcoRII | CCWGG | 2 cut(s) | 20, 460 |
| EcoRV | GATATC | 1 cut(s) | 12 |
| FaeI | CATG | 1 cut(s) | 433 |
| FaiI | YATR | 4 cut(s) | 18, 177, 242, 431 |
| FaqI | GGGAC | 1 cut(s) | 113 |
| FatI | CATG | 1 cut(s) | 429 |
| Fnu4HI | GCNGC | 3 cut(s) | 31, 366, 369 |
| FokI | GGATG | 1 cut(s) | 258 |
| Fsp4HI | GCNGC | 3 cut(s) | 31, 366, 369 |
| FspBI | CTAG | 2 cut(s) | 377, 447 |
| GluI | GCNGC | 3 cut(s) | 31, 366, 369 |
| HaeIII | GGCC | 3 cut(s) | 129, 216, 371 |
| HapII | CCGG | 2 cut(s) | 115, 153 |
| Hin1II | CATG | 1 cut(s) | 433 |
| HinfI | GANTC | 1 cut(s) | 267 |
| HpaII | CCGG | 2 cut(s) | 115, 153 |
| HphI | GGTGA | 2 cut(s) | 167, 284 |
| Hpy166II | GTNNAC | 1 cut(s) | 396 |
| Hpy188III | TCNNGA | 3 cut(s) | 115, 284, 339 |
| Hpy8I | GTNNAC | 1 cut(s) | 396 |
| HpyAV | CCTTC | 1 cut(s) | 159 |
| HpyCH4III | ACNGT | 2 cut(s) | 64, 353 |
| HpyCH4IV | ACGT | 1 cut(s) | 318 |
| HpyCH4V | TGCA | 5 cut(s) | 74, 137, 365, 396, 433 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 158, 365, 377 |
| HpyF3I | CTNAG | 4 cut(s) | 26, 89, 122, 471 |
| HpySE526I | ACGT | 1 cut(s) | 318 |
| Hsp92II | CATG | 1 cut(s) | 433 |
| Kpn2I | TCCGGA | 1 cut(s) | 114 |
| Kzo9I | GATC | 1 cut(s) | 333 |
| LpnPI | CCDG | 5 cut(s) | 7, 34, 128, 166, 447 |
| Lsp1109I | GCAGC | 1 cut(s) | 377 |
| LweI | GCATC | 1 cut(s) | 352 |
| MaeI | CTAG | 2 cut(s) | 377, 447 |
| MaeII | ACGT | 1 cut(s) | 318 |
| MaeIII | GTNAC | 1 cut(s) | 64 |
| MalI | GATC | 1 cut(s) | 335 |
| MboI | GATC | 1 cut(s) | 333 |
| MboII | GAAGA | 3 cut(s) | 211, 256, 449 |
| MfeI | CAATTG | 2 cut(s) | 259, 434 |
| MflI | RGATCY | 1 cut(s) | 333 |
| MhlI | GDGCHC | 1 cut(s) | 398 |
| MluCI | AATT | 5 cut(s) | 38, 225, 259, 287, 434 |
| MmeI | TCCRAC | 1 cut(s) | 446 |
| MroI | TCCGGA | 1 cut(s) | 114 |
| MseI | TTAA | 2 cut(s) | 228, 237 |
| MspA1I | CMGCKG | 1 cut(s) | 368 |
| MspI | CCGG | 2 cut(s) | 115, 153 |
| MspR9I | CCNGG | 2 cut(s) | 22, 462 |
| MunI | CAATTG | 2 cut(s) | 259, 434 |
| Mva1269I | GAATGC | 1 cut(s) | 208 |
| MvaI | CCWGG | 2 cut(s) | 22, 462 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 158, 365, 377 |
| NdeII | GATC | 1 cut(s) | 333 |
| NheI | GCTAGC | 1 cut(s) | 376 |
| NlaIII | CATG | 1 cut(s) | 433 |
| PctI | GAATGC | 1 cut(s) | 208 |
| PfeI | GAWTC | 1 cut(s) | 267 |
| PkrI | GCNGC | 3 cut(s) | 32, 367, 370 |
| PshBI | ATTAAT | 1 cut(s) | 228 |
| Psp6I | CCWGG | 2 cut(s) | 20, 460 |
| PspGI | CCWGG | 2 cut(s) | 20, 460 |
| PspPI | GGNCC | 3 cut(s) | 128, 416, 464 |
| PsuI | RGATCY | 1 cut(s) | 333 |
| RsaI | GTAC | 1 cut(s) | 171 |
| RsaNI | GTAC | 1 cut(s) | 170 |
| SaqAI | TTAA | 2 cut(s) | 228, 237 |
| SatI | GCNGC | 3 cut(s) | 31, 366, 369 |
| Sau3AI | GATC | 1 cut(s) | 333 |
| Sau96I | GGNCC | 3 cut(s) | 128, 416, 464 |
| ScrFI | CCNGG | 2 cut(s) | 22, 462 |
| SduI | GDGCHC | 1 cut(s) | 398 |
| SfaNI | GCATC | 1 cut(s) | 352 |
| SinI | GGWCC | 2 cut(s) | 416, 464 |
| SmlI | CTYRAG | 1 cut(s) | 337 |
| SmoI | CTYRAG | 1 cut(s) | 337 |
| SpeI | ACTAGT | 1 cut(s) | 446 |
| Sse9I | AATT | 5 cut(s) | 38, 225, 259, 287, 434 |
| SsiI | CCGC | 3 cut(s) | 4, 30, 368 |
| SspMI | CTAG | 2 cut(s) | 377, 447 |
| StyD4I | CCNGG | 2 cut(s) | 20, 460 |
| TaaI | ACNGT | 2 cut(s) | 64, 353 |
| TaiI | ACGT | 1 cut(s) | 321 |
| TaqI | TCGA | 1 cut(s) | 283 |
| TasI | AATT | 5 cut(s) | 38, 225, 259, 287, 434 |
| TauI | GCSGC | 2 cut(s) | 33, 371 |
| TfiI | GAWTC | 1 cut(s) | 267 |
| Tru1I | TTAA | 2 cut(s) | 228, 237 |
| Tru9I | TTAA | 2 cut(s) | 228, 237 |
| TseI | GCWGC | 1 cut(s) | 365 |
| TspDTI | ATGAA | 2 cut(s) | 51, 257 |
| VneI | GTGCAC | 1 cut(s) | 394 |
| VpaK11BI | GGWCC | 2 cut(s) | 416, 464 |
| VspI | ATTAAT | 1 cut(s) | 228 |
| XapI | RAATTY | 2 cut(s) | 38, 287 |
| XspI | CTAG | 2 cut(s) | 377, 447 |