ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 132 - 228 | 1.6e-09 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 90 |
| AciI | CCGC | 1 cut(s) | 476 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 309, 571, 637 |
| AgsI | TTSAA | 3 cut(s) | 29, 415, 687 |
| AjnI | CCWGG | 1 cut(s) | 307 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 452, 484 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 21, 53 |
| AluBI | AGCT | 2 cut(s) | 524, 542 |
| AluI | AGCT | 2 cut(s) | 524, 542 |
| Alw26I | GTCTC | 2 cut(s) | 53, 354 |
| ApeKI | GCWGC | 4 cut(s) | 278, 296, 440, 515 |
| AspS9I | GGNCC | 1 cut(s) | 499 |
| AsuC2I | CCSGG | 1 cut(s) | 691 |
| AsuII | TTCGAA | 1 cut(s) | 458 |
| AvaII | GGWCC | 1 cut(s) | 499 |
| BauI | CACGAG | 1 cut(s) | 450 |
| BbsI | GAAGAC | 1 cut(s) | 258 |
| BbvI | GCAGC | 4 cut(s) | 290, 308, 452, 502 |
| BccI | CCATC | 2 cut(s) | 363, 490 |
| BciT130I | CCWGG | 1 cut(s) | 309 |
| BcnI | CCSGG | 1 cut(s) | 691 |
| BcoDI | GTCTC | 2 cut(s) | 53, 354 |
| BfaI | CTAG | 1 cut(s) | 703 |
| BfmI | CTRYAG | 1 cut(s) | 516 |
| BisI | GCNGC | 4 cut(s) | 279, 297, 441, 516 |
| BlsI | GCNGC | 4 cut(s) | 280, 298, 442, 517 |
| Bme1390I | CCNGG | 2 cut(s) | 309, 691 |
| Bme18I | GGWCC | 1 cut(s) | 499 |
| BmgT120I | GGNCC | 1 cut(s) | 499 |
| BmiI | GGNNCC | 1 cut(s) | 501 |
| BmrFI | CCNGG | 2 cut(s) | 309, 691 |
| BmsI | GCATC | 4 cut(s) | 19, 391, 413, 556 |
| BpiI | GAAGAC | 1 cut(s) | 258 |
| BpmI | CTGGAG | 1 cut(s) | 225 |
| Bpu14I | TTCGAA | 1 cut(s) | 458 |
| BpuEI | CTTGAG | 3 cut(s) | 349, 582, 651 |
| BpuMI | CCSGG | 1 cut(s) | 691 |
| BsaJI | CCNNGG | 1 cut(s) | 308 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 21, 51 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 309, 571, 637 |
| Bse3DI | GCAATG | 1 cut(s) | 516 |
| BseBI | CCWGG | 1 cut(s) | 309 |
| BseDI | CCNNGG | 1 cut(s) | 308 |
| BseGI | GGATG | 1 cut(s) | 76 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 309, 571, 637 |
| BseMI | GCAATG | 1 cut(s) | 516 |
| BseMII | CTCAG | 1 cut(s) | 359 |
| BseXI | GCAGC | 4 cut(s) | 290, 308, 452, 502 |
| BsiSI | CCGG | 1 cut(s) | 691 |
| BslFI | GGGAC | 2 cut(s) | 80, 485 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 309, 571, 637 |
| BsmAI | GTCTC | 2 cut(s) | 53, 354 |
| BsmFI | GGGAC | 2 cut(s) | 80, 485 |
| Bsp119I | TTCGAA | 1 cut(s) | 458 |
| Bsp143I | GATC | 1 cut(s) | 125 |
| BspACI | CCGC | 1 cut(s) | 476 |
| BspCNI | CTCAG | 1 cut(s) | 358 |
| BspHI | TCATGA | 1 cut(s) | 13 |
| BspLI | GGNNCC | 1 cut(s) | 501 |
| BspMAI | CTGCAG | 1 cut(s) | 520 |
| BspT104I | TTCGAA | 1 cut(s) | 458 |
| BsrDI | GCAATG | 1 cut(s) | 516 |
| BssECI | CCNNGG | 1 cut(s) | 308 |
| BssMI | GATC | 1 cut(s) | 125 |
| BssSI | CACGAG | 1 cut(s) | 450 |
| Bst2BI | CACGAG | 1 cut(s) | 450 |
| Bst2UI | CCWGG | 1 cut(s) | 309 |
| Bst6I | CTCTTC | 1 cut(s) | 357 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 446, 515 |
| BstBI | TTCGAA | 1 cut(s) | 458 |
| BstC8I | GCNNGC | 1 cut(s) | 478 |
| BstDEI | CTNAG | 2 cut(s) | 345, 617 |
| BstF5I | GGATG | 1 cut(s) | 76 |
| BstKTI | GATC | 1 cut(s) | 128 |
| BstMAI | GTCTC | 2 cut(s) | 53, 354 |
| BstMBI | GATC | 1 cut(s) | 125 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 71, 446, 482, 515, 521 |
| BstNI | CCWGG | 1 cut(s) | 309 |
| BstSCI | CCNGG | 2 cut(s) | 307, 689 |
| BstSFI | CTRYAG | 1 cut(s) | 516 |
| BstV1I | GCAGC | 4 cut(s) | 290, 308, 452, 502 |
| BstV2I | GAAGAC | 1 cut(s) | 258 |
| BtgZI | GCGATG | 1 cut(s) | 211 |
| BtsCI | GGATG | 1 cut(s) | 76 |
| Cac8I | GCNNGC | 1 cut(s) | 478 |
| CciI | TCATGA | 1 cut(s) | 13 |
| Cfr13I | GGNCC | 1 cut(s) | 499 |
| CviAII | CATG | 3 cut(s) | 14, 275, 408 |
| CviJI | RGCY | 6 cut(s) | 307, 515, 524, 530, 542, 630 |
| CviKI_1 | RGCY | 6 cut(s) | 307, 515, 524, 530, 542, 630 |
| DdeI | CTNAG | 2 cut(s) | 345, 617 |
| DpnI | GATC | 1 cut(s) | 127 |
| DpnII | GATC | 1 cut(s) | 125 |
| DraI | TTTAAA | 1 cut(s) | 393 |
| Eam1104I | CTCTTC | 1 cut(s) | 357 |
| EarI | CTCTTC | 1 cut(s) | 357 |
| Eco47I | GGWCC | 1 cut(s) | 499 |
| EcoRII | CCWGG | 1 cut(s) | 307 |
| EcoT22I | ATGCAT | 2 cut(s) | 406, 549 |
| FaeI | CATG | 3 cut(s) | 17, 278, 411 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 408, 440 |
| FaqI | GGGAC | 2 cut(s) | 80, 485 |
| FatI | CATG | 3 cut(s) | 13, 274, 407 |
| FauI | CCCGC | 1 cut(s) | 469 |
| Fnu4HI | GCNGC | 4 cut(s) | 279, 297, 441, 516 |
| FokI | GGATG | 1 cut(s) | 63 |
| Fsp4HI | GCNGC | 4 cut(s) | 279, 297, 441, 516 |
| FspBI | CTAG | 1 cut(s) | 703 |
| GluI | GCNGC | 4 cut(s) | 279, 297, 441, 516 |
| GsuI | CTGGAG | 1 cut(s) | 225 |
| HapII | CCGG | 1 cut(s) | 691 |
| Hin1II | CATG | 3 cut(s) | 17, 278, 411 |
| HindIII | AAGCTT | 1 cut(s) | 522 |
| HinfI | GANTC | 7 cut(s) | 20, 142, 313, 373, 419, 455, 593 |
| HpaII | CCGG | 1 cut(s) | 691 |
| Hpy188I | TCNGA | 2 cut(s) | 592, 640 |
| Hpy188III | TCNNGA | 8 cut(s) | 14, 40, 52, 242, 253, 366, 452, 599 |
| HpyAV | CCTTC | 1 cut(s) | 513 |
| HpyCH4IV | ACGT | 1 cut(s) | 337 |
| HpyCH4V | TGCA | 8 cut(s) | 278, 296, 334, 404, 509, 518, 547, 571 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 71, 446, 482, 515, 521 |
| HpyF3I | CTNAG | 2 cut(s) | 345, 617 |
| HpySE526I | ACGT | 1 cut(s) | 337 |
| Hsp92II | CATG | 3 cut(s) | 17, 278, 411 |
| Kzo9I | GATC | 1 cut(s) | 125 |
| LpnPI | CCDG | 9 cut(s) | 37, 53, 178, 238, 255, 294, 321, 557, 645 |
| Lsp1109I | GCAGC | 4 cut(s) | 290, 308, 452, 502 |
| LweI | GCATC | 4 cut(s) | 19, 391, 413, 556 |
| MaeI | CTAG | 1 cut(s) | 703 |
| MaeII | ACGT | 1 cut(s) | 337 |
| MaeIII | GTNAC | 1 cut(s) | 161 |
| MalI | GATC | 1 cut(s) | 127 |
| MboI | GATC | 1 cut(s) | 125 |
| MboII | GAAGA | 3 cut(s) | 258, 344, 579 |
| MfeI | CAATTG | 3 cut(s) | 24, 329, 444 |
| MluCI | AATT | 4 cut(s) | 24, 146, 329, 444 |
| MlyI | GAGTC | 4 cut(s) | 29, 151, 413, 587 |
| MmeI | TCCRAC | 1 cut(s) | 182 |
| MnlI | CCTC | 5 cut(s) | 47, 108, 249, 371, 390 |
| Mph1103I | ATGCAT | 2 cut(s) | 406, 549 |
| MseI | TTAA | 2 cut(s) | 392, 699 |
| MslI | CAYNNNNRTG | 2 cut(s) | 15, 213 |
| MspI | CCGG | 1 cut(s) | 691 |
| MspR9I | CCNGG | 2 cut(s) | 309, 691 |
| MunI | CAATTG | 3 cut(s) | 24, 329, 444 |
| MvaI | CCWGG | 1 cut(s) | 309 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 71, 446, 482, 515, 521 |
| NciI | CCSGG | 1 cut(s) | 691 |
| NdeII | GATC | 1 cut(s) | 125 |
| NlaIII | CATG | 3 cut(s) | 17, 278, 411 |
| NlaIV | GGNNCC | 1 cut(s) | 501 |
| NmuCI | GTSAC | 1 cut(s) | 161 |
| NsiI | ATGCAT | 2 cut(s) | 406, 549 |
| NspV | TTCGAA | 1 cut(s) | 458 |
| PagI | TCATGA | 1 cut(s) | 13 |
| PfeI | GAWTC | 3 cut(s) | 313, 373, 455 |
| PkrI | GCNGC | 4 cut(s) | 280, 298, 442, 517 |
| PleI | GAGTC | 4 cut(s) | 28, 150, 413, 587 |
| PpsI | GAGTC | 4 cut(s) | 28, 150, 413, 587 |
| PsiI | TTATAA | 1 cut(s) | 90 |
| Psp6I | CCWGG | 1 cut(s) | 307 |
| PspGI | CCWGG | 1 cut(s) | 307 |
| PspN4I | GGNNCC | 1 cut(s) | 501 |
| PspPI | GGNCC | 1 cut(s) | 499 |
| PstI | CTGCAG | 1 cut(s) | 520 |
| RseI | CAYNNNNRTG | 2 cut(s) | 15, 213 |
| SaqAI | TTAA | 2 cut(s) | 392, 699 |
| SatI | GCNGC | 4 cut(s) | 279, 297, 441, 516 |
| Sau3AI | GATC | 1 cut(s) | 125 |
| Sau96I | GGNCC | 1 cut(s) | 499 |
| SchI | GAGTC | 4 cut(s) | 29, 151, 413, 587 |
| ScrFI | CCNGG | 2 cut(s) | 309, 691 |
| SetI | ASST | 4 cut(s) | 340, 382, 526, 544 |
| SfaNI | GCATC | 4 cut(s) | 19, 391, 413, 556 |
| SfcI | CTRYAG | 1 cut(s) | 516 |
| SfuI | TTCGAA | 1 cut(s) | 458 |
| SinI | GGWCC | 1 cut(s) | 499 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 15, 213 |
| SmlI | CTYRAG | 3 cut(s) | 364, 597, 666 |
| SmoI | CTYRAG | 3 cut(s) | 364, 597, 666 |
| Sse9I | AATT | 4 cut(s) | 24, 146, 329, 444 |
| SsiI | CCGC | 1 cut(s) | 476 |
| SspI | AATATT | 1 cut(s) | 658 |
| SspMI | CTAG | 1 cut(s) | 703 |
| StyD4I | CCNGG | 2 cut(s) | 307, 689 |
| TaiI | ACGT | 1 cut(s) | 340 |
| TaqI | TCGA | 3 cut(s) | 158, 458, 672 |
| TasI | AATT | 4 cut(s) | 24, 146, 329, 444 |
| TfiI | GAWTC | 3 cut(s) | 313, 373, 455 |
| Tru1I | TTAA | 2 cut(s) | 392, 699 |
| Tru9I | TTAA | 2 cut(s) | 392, 699 |
| TseFI | GTSAC | 1 cut(s) | 161 |
| TseI | GCWGC | 4 cut(s) | 278, 296, 440, 515 |
| Tsp45I | GTSAC | 1 cut(s) | 161 |
| TspDTI | ATGAA | 1 cut(s) | 571 |
| VpaK11BI | GGWCC | 1 cut(s) | 499 |
| XspI | CTAG | 1 cut(s) | 703 |
| Zsp2I | ATGCAT | 2 cut(s) | 406, 549 |