Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 1 - 59 | 6.9e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 153 |
| AflIII | ACRYGT | 1 cut(s) | 235 |
| AgsI | TTSAA | 1 cut(s) | 82 |
| AjnI | CCWGG | 1 cut(s) | 259 |
| AluBI | AGCT | 1 cut(s) | 30 |
| AluI | AGCT | 1 cut(s) | 30 |
| ApeKI | GCWGC | 2 cut(s) | 30, 155 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 132 |
| AspS9I | GGNCC | 1 cut(s) | 263 |
| AsuII | TTCGAA | 1 cut(s) | 50 |
| AvaII | GGWCC | 1 cut(s) | 263 |
| BbvI | GCAGC | 2 cut(s) | 17, 142 |
| BccI | CCATC | 2 cut(s) | 198, 245 |
| BceAI | ACGGC | 1 cut(s) | 183 |
| BciT130I | CCWGG | 1 cut(s) | 261 |
| BisI | GCNGC | 3 cut(s) | 31, 153, 156 |
| BlsI | GCNGC | 3 cut(s) | 32, 154, 157 |
| Bme1390I | CCNGG | 1 cut(s) | 261 |
| Bme18I | GGWCC | 1 cut(s) | 263 |
| BmgT120I | GGNCC | 1 cut(s) | 263 |
| BmrFI | CCNGG | 1 cut(s) | 261 |
| BmsI | GCATC | 1 cut(s) | 42 |
| Bpu14I | TTCGAA | 1 cut(s) | 50 |
| BsaAI | YACGTR | 1 cut(s) | 236 |
| BseBI | CCWGG | 1 cut(s) | 261 |
| BseMII | CTCAG | 1 cut(s) | 256 |
| BseXI | GCAGC | 2 cut(s) | 17, 142 |
| BsgI | GTGCAG | 1 cut(s) | 141 |
| Bsh1285I | CGRYCG | 1 cut(s) | 214 |
| BsiEI | CGRYCG | 1 cut(s) | 214 |
| BsmI | GAATGC | 1 cut(s) | 154 |
| Bsp119I | TTCGAA | 1 cut(s) | 50 |
| Bsp143I | GATC | 1 cut(s) | 211 |
| BspACI | CCGC | 1 cut(s) | 153 |
| BspCNI | CTCAG | 1 cut(s) | 255 |
| BspQI | GCTCTTC | 1 cut(s) | 108 |
| BspT104I | TTCGAA | 1 cut(s) | 50 |
| BssMI | GATC | 1 cut(s) | 211 |
| Bst2UI | CCWGG | 1 cut(s) | 261 |
| Bst6I | CTCTTC | 1 cut(s) | 108 |
| BstBAI | YACGTR | 1 cut(s) | 236 |
| BstBI | TTCGAA | 1 cut(s) | 50 |
| BstDEI | CTNAG | 1 cut(s) | 242 |
| BstKTI | GATC | 1 cut(s) | 214 |
| BstMBI | GATC | 1 cut(s) | 211 |
| BstMCI | CGRYCG | 1 cut(s) | 214 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 152, 176 |
| BstNI | CCWGG | 1 cut(s) | 261 |
| BstSCI | CCNGG | 1 cut(s) | 259 |
| BstV1I | GCAGC | 2 cut(s) | 17, 142 |
| Cfr13I | GGNCC | 1 cut(s) | 263 |
| CviAII | CATG | 1 cut(s) | 270 |
| CviJI | RGCY | 3 cut(s) | 30, 101, 170 |
| CviKI_1 | RGCY | 3 cut(s) | 30, 101, 170 |
| DdeI | CTNAG | 1 cut(s) | 242 |
| DpnI | GATC | 1 cut(s) | 213 |
| DpnII | GATC | 1 cut(s) | 211 |
| Eam1104I | CTCTTC | 1 cut(s) | 108 |
| EarI | CTCTTC | 1 cut(s) | 108 |
| Eco47I | GGWCC | 1 cut(s) | 263 |
| EcoRII | CCWGG | 1 cut(s) | 259 |
| FaeI | CATG | 1 cut(s) | 273 |
| FaiI | YATR | 1 cut(s) | 271 |
| FatI | CATG | 1 cut(s) | 269 |
| Fnu4HI | GCNGC | 3 cut(s) | 31, 153, 156 |
| Fsp4HI | GCNGC | 3 cut(s) | 31, 153, 156 |
| GluI | GCNGC | 3 cut(s) | 31, 153, 156 |
| Hin1II | CATG | 1 cut(s) | 273 |
| HinfI | GANTC | 2 cut(s) | 11, 133 |
| Hpy188I | TCNGA | 2 cut(s) | 92, 245 |
| HpyAV | CCTTC | 2 cut(s) | 178, 234 |
| HpyCH4IV | ACGT | 1 cut(s) | 235 |
| HpyCH4V | TGCA | 5 cut(s) | 33, 113, 158, 179, 199 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 152, 176 |
| HpyF3I | CTNAG | 1 cut(s) | 242 |
| HpySE526I | ACGT | 1 cut(s) | 235 |
| Hsp92II | CATG | 1 cut(s) | 273 |
| Kzo9I | GATC | 1 cut(s) | 211 |
| LguI | GCTCTTC | 1 cut(s) | 108 |
| LpnPI | CCDG | 1 cut(s) | 246 |
| Lsp1109I | GCAGC | 2 cut(s) | 17, 142 |
| LweI | GCATC | 1 cut(s) | 42 |
| MaeII | ACGT | 1 cut(s) | 235 |
| MalI | GATC | 1 cut(s) | 213 |
| MboI | GATC | 1 cut(s) | 211 |
| MboII | GAAGA | 2 cut(s) | 76, 95 |
| MluCI | AATT | 3 cut(s) | 24, 45, 58 |
| MnlI | CCTC | 4 cut(s) | 13, 84, 181, 251 |
| MroXI | GAANNNNTTC | 1 cut(s) | 132 |
| MspA1I | CMGCKG | 1 cut(s) | 155 |
| MspR9I | CCNGG | 1 cut(s) | 261 |
| Mva1269I | GAATGC | 1 cut(s) | 154 |
| MvaI | CCWGG | 1 cut(s) | 261 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 152, 176 |
| NdeII | GATC | 1 cut(s) | 211 |
| NlaIII | CATG | 1 cut(s) | 273 |
| NspV | TTCGAA | 1 cut(s) | 50 |
| PciSI | GCTCTTC | 1 cut(s) | 108 |
| PctI | GAATGC | 1 cut(s) | 154 |
| PdmI | GAANNNNTTC | 1 cut(s) | 132 |
| PfeI | GAWTC | 2 cut(s) | 11, 133 |
| PkrI | GCNGC | 3 cut(s) | 32, 154, 157 |
| Ple19I | CGATCG | 1 cut(s) | 214 |
| Ppu21I | YACGTR | 1 cut(s) | 236 |
| Psp6I | CCWGG | 1 cut(s) | 259 |
| PspGI | CCWGG | 1 cut(s) | 259 |
| PspPI | GGNCC | 1 cut(s) | 263 |
| PvuI | CGATCG | 1 cut(s) | 214 |
| SapI | GCTCTTC | 1 cut(s) | 108 |
| SatI | GCNGC | 3 cut(s) | 31, 153, 156 |
| Sau3AI | GATC | 1 cut(s) | 211 |
| Sau96I | GGNCC | 1 cut(s) | 263 |
| ScrFI | CCNGG | 1 cut(s) | 261 |
| SetI | ASST | 5 cut(s) | 24, 32, 192, 226, 238 |
| SfaNI | GCATC | 1 cut(s) | 42 |
| SfuI | TTCGAA | 1 cut(s) | 50 |
| SgeI | CNNG | 5 cut(s) | 132, 150, 175, 188, 248 |
| SinI | GGWCC | 1 cut(s) | 263 |
| Sse9I | AATT | 3 cut(s) | 24, 45, 58 |
| SsiI | CCGC | 1 cut(s) | 153 |
| StyD4I | CCNGG | 1 cut(s) | 259 |
| TaiI | ACGT | 1 cut(s) | 238 |
| TaqI | TCGA | 3 cut(s) | 50, 210, 214 |
| TasI | AATT | 3 cut(s) | 24, 45, 58 |
| TauI | GCSGC | 1 cut(s) | 155 |
| TfiI | GAWTC | 2 cut(s) | 11, 133 |
| TseI | GCWGC | 2 cut(s) | 30, 155 |
| VpaK11BI | GGWCC | 1 cut(s) | 263 |
| XmnI | GAANNNNTTC | 1 cut(s) | 132 |