ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 60 - 153 | 7.7e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 67 |
| AclWI | GGATC | 2 cut(s) | 107, 113 |
| AcuI | CTGAAG | 1 cut(s) | 314 |
| AgsI | TTSAA | 1 cut(s) | 62 |
| AleI | CACNNNNGTG | 1 cut(s) | 213 |
| AluBI | AGCT | 2 cut(s) | 334, 388 |
| AluI | AGCT | 2 cut(s) | 334, 388 |
| AlwI | GGATC | 2 cut(s) | 107, 113 |
| Ama87I | CYCGRG | 1 cut(s) | 24 |
| AoxI | GGCC | 3 cut(s) | 247, 306, 325 |
| ApeKI | GCWGC | 2 cut(s) | 148, 338 |
| AspS9I | GGNCC | 1 cut(s) | 325 |
| AsuC2I | CCSGG | 2 cut(s) | 25, 26 |
| AsuHPI | GGTGA | 1 cut(s) | 386 |
| AvaI | CYCGRG | 1 cut(s) | 24 |
| AxyI | CCTNAGG | 1 cut(s) | 347 |
| BbvI | GCAGC | 2 cut(s) | 160, 325 |
| BccI | CCATC | 1 cut(s) | 143 |
| BcnI | CCSGG | 2 cut(s) | 25, 26 |
| BisI | GCNGC | 2 cut(s) | 149, 339 |
| BlsI | GCNGC | 2 cut(s) | 150, 340 |
| Bme1390I | CCNGG | 2 cut(s) | 25, 26 |
| BmeT110I | CYCGRG | 1 cut(s) | 24 |
| BmgT120I | GGNCC | 1 cut(s) | 325 |
| BmiI | GGNNCC | 2 cut(s) | 265, 353 |
| BmrFI | CCNGG | 2 cut(s) | 25, 26 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 421, 453 |
| BpuMI | CCSGG | 2 cut(s) | 25, 26 |
| BsaBI | GATNNNNATC | 2 cut(s) | 117, 123 |
| BsaJI | CCNNGG | 3 cut(s) | 23, 24, 309 |
| Bse1I | ACTGG | 1 cut(s) | 267 |
| Bse21I | CCTNAGG | 1 cut(s) | 347 |
| Bse8I | GATNNNNATC | 2 cut(s) | 117, 123 |
| BseDI | CCNNGG | 3 cut(s) | 23, 24, 309 |
| BseGI | GGATG | 2 cut(s) | 135, 363 |
| BseJI | GATNNNNATC | 2 cut(s) | 117, 123 |
| BseNI | ACTGG | 1 cut(s) | 267 |
| BseRI | GAGGAG | 2 cut(s) | 403, 406 |
| BseXI | GCAGC | 2 cut(s) | 160, 325 |
| BshFI | GGCC | 3 cut(s) | 249, 308, 327 |
| BsiHKCI | CYCGRG | 1 cut(s) | 24 |
| BsiSI | CCGG | 1 cut(s) | 25 |
| BsmI | GAATGC | 1 cut(s) | 76 |
| BsnI | GGCC | 3 cut(s) | 249, 308, 327 |
| BsoBI | CYCGRG | 1 cut(s) | 24 |
| Bsp143I | GATC | 2 cut(s) | 112, 118 |
| BspACI | CCGC | 1 cut(s) | 67 |
| BspANI | GGCC | 3 cut(s) | 249, 308, 327 |
| BspLI | GGNNCC | 2 cut(s) | 265, 353 |
| BspPI | GGATC | 2 cut(s) | 107, 113 |
| BsrI | ACTGG | 1 cut(s) | 267 |
| BssECI | CCNNGG | 3 cut(s) | 23, 24, 309 |
| BssMI | GATC | 2 cut(s) | 112, 118 |
| BssT1I | CCWWGG | 1 cut(s) | 309 |
| Bst4CI | ACNGT | 1 cut(s) | 380 |
| BstC8I | GCNNGC | 1 cut(s) | 336 |
| BstDEI | CTNAG | 1 cut(s) | 347 |
| BstF5I | GGATG | 2 cut(s) | 135, 363 |
| BstKTI | GATC | 2 cut(s) | 115, 121 |
| BstMBI | GATC | 2 cut(s) | 112, 118 |
| BstSCI | CCNGG | 2 cut(s) | 23, 24 |
| BstV1I | GCAGC | 2 cut(s) | 160, 325 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 316 |
| Bsu36I | CCTNAGG | 1 cut(s) | 347 |
| BsuRI | GGCC | 3 cut(s) | 249, 308, 327 |
| BtsCI | GGATG | 2 cut(s) | 135, 363 |
| Cac8I | GCNNGC | 1 cut(s) | 336 |
| Cfr13I | GGNCC | 1 cut(s) | 325 |
| Cfr9I | CCCGGG | 1 cut(s) | 24 |
| CviAII | CATG | 2 cut(s) | 8, 395 |
| DdeI | CTNAG | 1 cut(s) | 347 |
| DpnI | GATC | 2 cut(s) | 114, 120 |
| DpnII | GATC | 2 cut(s) | 112, 118 |
| EciI | GGCGGA | 1 cut(s) | 82 |
| Eco130I | CCWWGG | 1 cut(s) | 309 |
| Eco57I | CTGAAG | 1 cut(s) | 314 |
| Eco81I | CCTNAGG | 1 cut(s) | 347 |
| Eco88I | CYCGRG | 1 cut(s) | 24 |
| EcoO109I | RGGNCCY | 1 cut(s) | 325 |
| EcoT14I | CCWWGG | 1 cut(s) | 309 |
| ErhI | CCWWGG | 1 cut(s) | 309 |
| FaeI | CATG | 2 cut(s) | 11, 398 |
| FaiI | YATR | 6 cut(s) | 9, 245, 396, 441, 443, 483 |
| FatI | CATG | 2 cut(s) | 7, 394 |
| FauNDI | CATATG | 1 cut(s) | 441 |
| Fnu4HI | GCNGC | 2 cut(s) | 149, 339 |
| FokI | GGATG | 2 cut(s) | 122, 350 |
| Fsp4HI | GCNGC | 2 cut(s) | 149, 339 |
| GluI | GCNGC | 2 cut(s) | 149, 339 |
| HaeIII | GGCC | 3 cut(s) | 249, 308, 327 |
| HapII | CCGG | 1 cut(s) | 25 |
| Hin1II | CATG | 2 cut(s) | 11, 398 |
| HinfI | GANTC | 3 cut(s) | 131, 205, 458 |
| HpaII | CCGG | 1 cut(s) | 25 |
| HphI | GGTGA | 1 cut(s) | 386 |
| Hpy188I | TCNGA | 1 cut(s) | 236 |
| Hpy188III | TCNNGA | 3 cut(s) | 116, 128, 383 |
| HpyAV | CCTTC | 2 cut(s) | 338, 365 |
| HpyCH4III | ACNGT | 1 cut(s) | 380 |
| HpyCH4V | TGCA | 1 cut(s) | 260 |
| HpyF3I | CTNAG | 1 cut(s) | 347 |
| Hsp92II | CATG | 2 cut(s) | 11, 398 |
| Kzo9I | GATC | 2 cut(s) | 112, 118 |
| LmnI | GCTCC | 4 cut(s) | 13, 263, 357, 385 |
| LpnPI | CCDG | 7 cut(s) | 38, 63, 129, 141, 246, 280, 368 |
| Lsp1109I | GCAGC | 2 cut(s) | 160, 325 |
| MaeIII | GTNAC | 1 cut(s) | 374 |
| MalI | GATC | 2 cut(s) | 114, 120 |
| MboI | GATC | 2 cut(s) | 112, 118 |
| MfeI | CAATTG | 1 cut(s) | 255 |
| MluCI | AATT | 5 cut(s) | 255, 286, 406, 424, 472 |
| MlyI | GAGTC | 2 cut(s) | 199, 467 |
| MmeI | TCCRAC | 1 cut(s) | 66 |
| MnlI | CCTC | 8 cut(s) | 65, 166, 298, 377, 421, 423, 424, 427 |
| MseI | TTAA | 3 cut(s) | 45, 171, 297 |
| MslI | CAYNNNNRTG | 1 cut(s) | 213 |
| MspI | CCGG | 1 cut(s) | 25 |
| MspR9I | CCNGG | 2 cut(s) | 25, 26 |
| MunI | CAATTG | 1 cut(s) | 255 |
| Mva1269I | GAATGC | 1 cut(s) | 76 |
| NciI | CCSGG | 2 cut(s) | 25, 26 |
| NdeI | CATATG | 1 cut(s) | 441 |
| NdeII | GATC | 2 cut(s) | 112, 118 |
| NlaIII | CATG | 2 cut(s) | 11, 398 |
| NlaIV | GGNNCC | 2 cut(s) | 265, 353 |
| NmuCI | GTSAC | 1 cut(s) | 374 |
| OliI | CACNNNNGTG | 1 cut(s) | 213 |
| PctI | GAATGC | 1 cut(s) | 76 |
| PfeI | GAWTC | 1 cut(s) | 131 |
| PkrI | GCNGC | 2 cut(s) | 150, 340 |
| PleI | GAGTC | 2 cut(s) | 199, 466 |
| PpsI | GAGTC | 2 cut(s) | 199, 466 |
| PspN4I | GGNNCC | 2 cut(s) | 265, 353 |
| PspPI | GGNCC | 1 cut(s) | 325 |
| RseI | CAYNNNNRTG | 1 cut(s) | 213 |
| SaqAI | TTAA | 3 cut(s) | 45, 171, 297 |
| SatI | GCNGC | 2 cut(s) | 149, 339 |
| Sau3AI | GATC | 2 cut(s) | 112, 118 |
| Sau96I | GGNCC | 1 cut(s) | 325 |
| SchI | GAGTC | 2 cut(s) | 199, 467 |
| ScrFI | CCNGG | 2 cut(s) | 25, 26 |
| SetI | ASST | 5 cut(s) | 57, 336, 376, 390, 456 |
| SmaI | CCCGGG | 1 cut(s) | 26 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 213 |
| Sse9I | AATT | 5 cut(s) | 255, 286, 406, 424, 472 |
| SsiI | CCGC | 1 cut(s) | 67 |
| StyD4I | CCNGG | 2 cut(s) | 23, 24 |
| StyI | CCWWGG | 1 cut(s) | 309 |
| TaaI | ACNGT | 1 cut(s) | 380 |
| TaqI | TCGA | 2 cut(s) | 303, 369 |
| TasI | AATT | 5 cut(s) | 255, 286, 406, 424, 472 |
| TfiI | GAWTC | 1 cut(s) | 131 |
| Tru1I | TTAA | 3 cut(s) | 45, 171, 297 |
| Tru9I | TTAA | 3 cut(s) | 45, 171, 297 |
| TseFI | GTSAC | 1 cut(s) | 374 |
| TseI | GCWGC | 2 cut(s) | 148, 338 |
| Tsp45I | GTSAC | 1 cut(s) | 374 |
| TspDTI | ATGAA | 2 cut(s) | 201, 383 |
| TspMI | CCCGGG | 1 cut(s) | 24 |
| XmaI | CCCGGG | 1 cut(s) | 24 |