ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 239 |
| AclWI | GGATC | 2 cut(s) | 316, 622 |
| AcsI | RAATTY | 1 cut(s) | 512 |
| AcyI | GRCGYC | 1 cut(s) | 240 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 102 |
| AgsI | TTSAA | 3 cut(s) | 378, 443, 641 |
| AjnI | CCWGG | 1 cut(s) | 450 |
| AluBI | AGCT | 6 cut(s) | 73, 272, 410, 534, 701, 767 |
| AluI | AGCT | 6 cut(s) | 73, 272, 410, 534, 701, 767 |
| Alw21I | GWGCWC | 1 cut(s) | 366 |
| AlwI | GGATC | 2 cut(s) | 316, 622 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 11 |
| Ama87I | CYCGRG | 1 cut(s) | 132 |
| ApeKI | GCWGC | 3 cut(s) | 11, 764, 772 |
| ApoI | RAATTY | 1 cut(s) | 512 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 196 |
| AspLEI | GCGC | 2 cut(s) | 242, 356 |
| AspS9I | GGNCC | 1 cut(s) | 145 |
| AsuC2I | CCSGG | 1 cut(s) | 596 |
| AsuHPI | GGTGA | 2 cut(s) | 77, 532 |
| AvaI | CYCGRG | 1 cut(s) | 132 |
| AvaII | GGWCC | 1 cut(s) | 145 |
| BaeGI | GKGCMC | 1 cut(s) | 342 |
| BanI | GGYRCC | 1 cut(s) | 239 |
| BanII | GRGCYC | 1 cut(s) | 133 |
| Bbv12I | GWGCWC | 1 cut(s) | 366 |
| BbvI | GCAGC | 2 cut(s) | 776, 784 |
| BccI | CCATC | 1 cut(s) | 532 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 395, 429 |
| BciT130I | CCWGG | 1 cut(s) | 452 |
| BclI | TGATCA | 1 cut(s) | 703 |
| BcnI | CCSGG | 1 cut(s) | 596 |
| BfaI | CTAG | 2 cut(s) | 23, 796 |
| BfmI | CTRYAG | 1 cut(s) | 770 |
| BfoI | RGCGCY | 2 cut(s) | 243, 357 |
| BisI | GCNGC | 3 cut(s) | 12, 765, 773 |
| BlsI | GCNGC | 3 cut(s) | 13, 766, 774 |
| Bme1390I | CCNGG | 2 cut(s) | 452, 596 |
| Bme18I | GGWCC | 1 cut(s) | 145 |
| BmeT110I | CYCGRG | 1 cut(s) | 132 |
| BmgT120I | GGNCC | 1 cut(s) | 145 |
| BmiI | GGNNCC | 2 cut(s) | 130, 241 |
| BmrFI | CCNGG | 2 cut(s) | 452, 596 |
| BmsI | GCATC | 2 cut(s) | 9, 730 |
| Bpu10I | CCTNAGC | 1 cut(s) | 548 |
| BpuEI | CTTGAG | 2 cut(s) | 85, 560 |
| BpuMI | CCSGG | 1 cut(s) | 596 |
| BsaBI | GATNNNNATC | 2 cut(s) | 113, 542 |
| BsaHI | GRCGYC | 1 cut(s) | 240 |
| BsaJI | CCNNGG | 4 cut(s) | 124, 141, 451, 610 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 102 |
| Bse118I | RCCGGY | 1 cut(s) | 95 |
| Bse8I | GATNNNNATC | 2 cut(s) | 113, 542 |
| BseBI | CCWGG | 1 cut(s) | 452 |
| BseDI | CCNNGG | 4 cut(s) | 124, 141, 451, 610 |
| BseGI | GGATG | 1 cut(s) | 543 |
| BseJI | GATNNNNATC | 2 cut(s) | 113, 542 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 102 |
| BseMII | CTCAG | 1 cut(s) | 516 |
| BseRI | GAGGAG | 1 cut(s) | 277 |
| BseSI | GKGCMC | 1 cut(s) | 342 |
| BseXI | GCAGC | 2 cut(s) | 776, 784 |
| BsgI | GTGCAG | 1 cut(s) | 399 |
| BshNI | GGYRCC | 1 cut(s) | 239 |
| BsiHKAI | GWGCWC | 1 cut(s) | 366 |
| BsiHKCI | CYCGRG | 1 cut(s) | 132 |
| BsiSI | CCGG | 2 cut(s) | 96, 595 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 102 |
| BsoBI | CYCGRG | 1 cut(s) | 132 |
| Bsp1286I | GDGCHC | 3 cut(s) | 133, 342, 366 |
| Bsp143I | GATC | 7 cut(s) | 114, 308, 474, 614, 627, 663, 703 |
| Bsp19I | CCATGG | 2 cut(s) | 124, 610 |
| BspCNI | CTCAG | 1 cut(s) | 517 |
| BspHI | TCATGA | 1 cut(s) | 385 |
| BspLI | GGNNCC | 2 cut(s) | 130, 241 |
| BspMAI | CTGCAG | 1 cut(s) | 774 |
| BspPI | GGATC | 2 cut(s) | 316, 622 |
| BspT107I | GGYRCC | 1 cut(s) | 239 |
| BsrFI | RCCGGY | 1 cut(s) | 95 |
| BssAI | RCCGGY | 1 cut(s) | 95 |
| BssECI | CCNNGG | 4 cut(s) | 124, 141, 451, 610 |
| BssMI | GATC | 7 cut(s) | 114, 308, 474, 614, 627, 663, 703 |
| BssNI | GRCGYC | 1 cut(s) | 240 |
| BssT1I | CCWWGG | 3 cut(s) | 124, 141, 610 |
| Bst2UI | CCWGG | 1 cut(s) | 452 |
| Bst4CI | ACNGT | 4 cut(s) | 344, 400, 607, 742 |
| BstACI | GRCGYC | 1 cut(s) | 240 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 11 |
| BstC8I | GCNNGC | 2 cut(s) | 285, 418 |
| BstDEI | CTNAG | 2 cut(s) | 525, 548 |
| BstDSI | CCRYGG | 2 cut(s) | 124, 610 |
| BstF5I | GGATG | 1 cut(s) | 543 |
| BstH2I | RGCGCY | 2 cut(s) | 243, 357 |
| BstHHI | GCGC | 2 cut(s) | 242, 356 |
| BstKTI | GATC | 7 cut(s) | 117, 311, 477, 617, 630, 666, 706 |
| BstMBI | GATC | 7 cut(s) | 114, 308, 474, 614, 627, 663, 703 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 11 |
| BstNI | CCWGG | 1 cut(s) | 452 |
| BstNSI | RCATGY | 1 cut(s) | 287 |
| BstSCI | CCNGG | 2 cut(s) | 450, 594 |
| BstSFI | CTRYAG | 1 cut(s) | 770 |
| BstSLI | GKGCMC | 1 cut(s) | 342 |
| BstV1I | GCAGC | 2 cut(s) | 776, 784 |
| BstX2I | RGATCY | 1 cut(s) | 614 |
| BstYI | RGATCY | 1 cut(s) | 614 |
| BtgI | CCRYGG | 2 cut(s) | 124, 610 |
| BtsCI | GGATG | 1 cut(s) | 543 |
| BtsIMutI | CAGTG | 1 cut(s) | 552 |
| Cac8I | GCNNGC | 2 cut(s) | 285, 418 |
| CaiI | CAGNNNCTG | 1 cut(s) | 11 |
| CciI | TCATGA | 1 cut(s) | 385 |
| CfoI | GCGC | 2 cut(s) | 242, 356 |
| Cfr10I | RCCGGY | 1 cut(s) | 95 |
| Cfr13I | GGNCC | 1 cut(s) | 145 |
| CviAII | CATG | 8 cut(s) | 62, 89, 125, 259, 284, 317, 386, 611 |
| DdeI | CTNAG | 2 cut(s) | 525, 548 |
| DinI | GGCGCC | 1 cut(s) | 241 |
| DpnI | GATC | 7 cut(s) | 116, 310, 476, 616, 629, 665, 705 |
| DpnII | GATC | 7 cut(s) | 114, 308, 474, 614, 627, 663, 703 |
| Eco130I | CCWWGG | 3 cut(s) | 124, 141, 610 |
| Eco24I | GRGCYC | 1 cut(s) | 133 |
| Eco47I | GGWCC | 1 cut(s) | 145 |
| Eco88I | CYCGRG | 1 cut(s) | 132 |
| EcoRII | CCWGG | 1 cut(s) | 450 |
| EcoT14I | CCWWGG | 3 cut(s) | 124, 141, 610 |
| EcoT22I | ATGCAT | 1 cut(s) | 649 |
| EcoT38I | GRGCYC | 1 cut(s) | 133 |
| EgeI | GGCGCC | 1 cut(s) | 241 |
| EheI | GGCGCC | 1 cut(s) | 241 |
| ErhI | CCWWGG | 3 cut(s) | 124, 141, 610 |
| FaeI | CATG | 8 cut(s) | 65, 92, 128, 262, 287, 320, 389, 614 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 134, 166 |
| FatI | CATG | 8 cut(s) | 61, 88, 124, 258, 283, 316, 385, 610 |
| FbaI | TGATCA | 1 cut(s) | 703 |
| Fnu4HI | GCNGC | 3 cut(s) | 12, 765, 773 |
| FokI | GGATG | 1 cut(s) | 530 |
| FriOI | GRGCYC | 1 cut(s) | 133 |
| Fsp4HI | GCNGC | 3 cut(s) | 12, 765, 773 |
| FspBI | CTAG | 2 cut(s) | 23, 796 |
| GlaI | GCGC | 2 cut(s) | 241, 355 |
| GluI | GCNGC | 3 cut(s) | 12, 765, 773 |
| HaeII | RGCGCY | 2 cut(s) | 243, 357 |
| HapII | CCGG | 2 cut(s) | 96, 595 |
| HhaI | GCGC | 2 cut(s) | 242, 356 |
| Hin1I | GRCGYC | 1 cut(s) | 240 |
| Hin1II | CATG | 8 cut(s) | 65, 92, 128, 262, 287, 320, 389, 614 |
| Hin6I | GCGC | 2 cut(s) | 240, 354 |
| HinP1I | GCGC | 2 cut(s) | 240, 354 |
| HindIII | AAGCTT | 3 cut(s) | 71, 408, 532 |
| HinfI | GANTC | 2 cut(s) | 489, 566 |
| HpaII | CCGG | 2 cut(s) | 96, 595 |
| HphI | GGTGA | 2 cut(s) | 77, 532 |
| Hpy166II | GTNNAC | 1 cut(s) | 751 |
| Hpy188III | TCNNGA | 3 cut(s) | 306, 386, 577 |
| Hpy8I | GTNNAC | 1 cut(s) | 751 |
| HpyAV | CCTTC | 4 cut(s) | 211, 230, 479, 689 |
| HpyCH4III | ACNGT | 4 cut(s) | 344, 400, 607, 742 |
| HpyCH4V | TGCA | 7 cut(s) | 14, 176, 283, 329, 416, 647, 772 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 11 |
| HpyF3I | CTNAG | 2 cut(s) | 525, 548 |
| Hsp92I | GRCGYC | 1 cut(s) | 240 |
| Hsp92II | CATG | 8 cut(s) | 65, 92, 128, 262, 287, 320, 389, 614 |
| HspAI | GCGC | 2 cut(s) | 240, 354 |
| KasI | GGCGCC | 1 cut(s) | 239 |
| Ksp22I | TGATCA | 1 cut(s) | 703 |
| Kzo9I | GATC | 7 cut(s) | 114, 308, 474, 614, 627, 663, 703 |
| LmnI | GCTCC | 3 cut(s) | 128, 369, 698 |
| Lsp1109I | GCAGC | 2 cut(s) | 776, 784 |
| LweI | GCATC | 2 cut(s) | 9, 730 |
| MaeI | CTAG | 2 cut(s) | 23, 796 |
| MaeIII | GTNAC | 4 cut(s) | 49, 254, 520, 710 |
| MalI | GATC | 7 cut(s) | 116, 310, 476, 616, 629, 665, 705 |
| MboI | GATC | 7 cut(s) | 114, 308, 474, 614, 627, 663, 703 |
| MboII | GAAGA | 2 cut(s) | 484, 780 |
| MflI | RGATCY | 1 cut(s) | 614 |
| MhlI | GDGCHC | 3 cut(s) | 133, 342, 366 |
| MluCI | AATT | 3 cut(s) | 192, 330, 512 |
| Mly113I | GGCGCC | 1 cut(s) | 240 |
| MmeI | TCCRAC | 1 cut(s) | 319 |
| MnlI | CCTC | 5 cut(s) | 148, 255, 344, 520, 584 |
| Mph1103I | ATGCAT | 1 cut(s) | 649 |
| MroXI | GAANNNNTTC | 1 cut(s) | 196 |
| MseI | TTAA | 1 cut(s) | 324 |
| MslI | CAYNNNNRTG | 1 cut(s) | 557 |
| MspI | CCGG | 2 cut(s) | 96, 595 |
| MspR9I | CCNGG | 2 cut(s) | 452, 596 |
| MvaI | CCWGG | 1 cut(s) | 452 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 11 |
| NarI | GGCGCC | 1 cut(s) | 240 |
| NciI | CCSGG | 1 cut(s) | 596 |
| NcoI | CCATGG | 2 cut(s) | 124, 610 |
| NdeII | GATC | 7 cut(s) | 114, 308, 474, 614, 627, 663, 703 |
| NlaIII | CATG | 8 cut(s) | 65, 92, 128, 262, 287, 320, 389, 614 |
| NlaIV | GGNNCC | 2 cut(s) | 130, 241 |
| NmeAIII | GCCGAG | 1 cut(s) | 754 |
| NmuCI | GTSAC | 2 cut(s) | 254, 520 |
| NsiI | ATGCAT | 1 cut(s) | 649 |
| NspI | RCATGY | 1 cut(s) | 287 |
| PaeI | GCATGC | 1 cut(s) | 287 |
| PagI | TCATGA | 1 cut(s) | 385 |
| PdmI | GAANNNNTTC | 1 cut(s) | 196 |
| PfeI | GAWTC | 2 cut(s) | 489, 566 |
| PkrI | GCNGC | 3 cut(s) | 13, 766, 774 |
| PluTI | GGCGCC | 1 cut(s) | 243 |
| Psp6I | CCWGG | 1 cut(s) | 450 |
| PspGI | CCWGG | 1 cut(s) | 450 |
| PspN4I | GGNNCC | 2 cut(s) | 130, 241 |
| PspPI | GGNCC | 1 cut(s) | 145 |
| PstI | CTGCAG | 1 cut(s) | 774 |
| PstNI | CAGNNNCTG | 1 cut(s) | 11 |
| PsuI | RGATCY | 1 cut(s) | 614 |
| RseI | CAYNNNNRTG | 1 cut(s) | 557 |
| SaqAI | TTAA | 1 cut(s) | 324 |
| SatI | GCNGC | 3 cut(s) | 12, 765, 773 |
| Sau3AI | GATC | 7 cut(s) | 114, 308, 474, 614, 627, 663, 703 |
| Sau96I | GGNCC | 1 cut(s) | 145 |
| ScrFI | CCNGG | 2 cut(s) | 452, 596 |
| SduI | GDGCHC | 3 cut(s) | 133, 342, 366 |
| SfaNI | GCATC | 2 cut(s) | 9, 730 |
| SfcI | CTRYAG | 1 cut(s) | 770 |
| SfoI | GGCGCC | 1 cut(s) | 241 |
| SinI | GGWCC | 1 cut(s) | 145 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 557 |
| SmlI | CTYRAG | 2 cut(s) | 100, 575 |
| SmoI | CTYRAG | 2 cut(s) | 100, 575 |
| SphI | GCATGC | 1 cut(s) | 287 |
| Sse9I | AATT | 3 cut(s) | 192, 330, 512 |
| SspDI | GGCGCC | 1 cut(s) | 239 |
| SspMI | CTAG | 2 cut(s) | 23, 796 |
| StyD4I | CCNGG | 2 cut(s) | 450, 594 |
| StyI | CCWWGG | 3 cut(s) | 124, 141, 610 |
| TaaI | ACNGT | 4 cut(s) | 344, 400, 607, 742 |
| TaqI | TCGA | 1 cut(s) | 405 |
| TasI | AATT | 3 cut(s) | 192, 330, 512 |
| TfiI | GAWTC | 2 cut(s) | 489, 566 |
| Tru1I | TTAA | 1 cut(s) | 324 |
| Tru9I | TTAA | 1 cut(s) | 324 |
| TscAI | CASTG | 1 cut(s) | 559 |
| TseFI | GTSAC | 2 cut(s) | 254, 520 |
| TseI | GCWGC | 3 cut(s) | 11, 764, 772 |
| Tsp45I | GTSAC | 2 cut(s) | 254, 520 |
| TspDTI | ATGAA | 3 cut(s) | 105, 481, 745 |
| TspGWI | ACGGA | 1 cut(s) | 194 |
| TspRI | CASTG | 1 cut(s) | 559 |
| VpaK11BI | GGWCC | 1 cut(s) | 145 |
| XapI | RAATTY | 1 cut(s) | 512 |
| XceI | RCATGY | 1 cut(s) | 287 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 302 |
| XmnI | GAANNNNTTC | 1 cut(s) | 196 |
| XspI | CTAG | 2 cut(s) | 23, 796 |
| Zsp2I | ATGCAT | 1 cut(s) | 649 |