Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 36 - 99 | 7.5e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 62 |
| AciI | CCGC | 2 cut(s) | 60, 230 |
| AclWI | GGATC | 1 cut(s) | 83 |
| AcoI | YGGCCR | 1 cut(s) | 57 |
| AcsI | RAATTY | 1 cut(s) | 8 |
| AgsI | TTSAA | 3 cut(s) | 69, 206, 227 |
| AjnI | CCWGG | 1 cut(s) | 119 |
| AluBI | AGCT | 1 cut(s) | 242 |
| AluI | AGCT | 1 cut(s) | 242 |
| Alw26I | GTCTC | 1 cut(s) | 49 |
| AlwI | GGATC | 1 cut(s) | 83 |
| AoxI | GGCC | 1 cut(s) | 57 |
| ApoI | RAATTY | 1 cut(s) | 8 |
| AspS9I | GGNCC | 1 cut(s) | 123 |
| AvaII | GGWCC | 1 cut(s) | 123 |
| BaeGI | GKGCMC | 1 cut(s) | 56 |
| BccI | CCATC | 2 cut(s) | 178, 275 |
| BceAI | ACGGC | 1 cut(s) | 72 |
| BciT130I | CCWGG | 1 cut(s) | 121 |
| BciVI | GTATCC | 1 cut(s) | 160 |
| BcoDI | GTCTC | 1 cut(s) | 49 |
| BfaI | CTAG | 1 cut(s) | 189 |
| BfmI | CTRYAG | 1 cut(s) | 27 |
| BfuI | GTATCC | 1 cut(s) | 160 |
| BisI | GCNGC | 1 cut(s) | 60 |
| BlsI | GCNGC | 1 cut(s) | 61 |
| Bme1390I | CCNGG | 1 cut(s) | 121 |
| Bme18I | GGWCC | 1 cut(s) | 123 |
| BmgT120I | GGNCC | 1 cut(s) | 123 |
| BmrFI | CCNGG | 1 cut(s) | 121 |
| BmsI | GCATC | 1 cut(s) | 103 |
| BsaI | GGTCTC | 1 cut(s) | 49 |
| BseBI | CCWGG | 1 cut(s) | 121 |
| BseGI | GGATG | 1 cut(s) | 267 |
| BseMII | CTCAG | 1 cut(s) | 62 |
| BseSI | GKGCMC | 1 cut(s) | 56 |
| BseX3I | CGGCCG | 1 cut(s) | 57 |
| BseYI | CCCAGC | 1 cut(s) | 242 |
| Bsh1285I | CGRYCG | 1 cut(s) | 60 |
| BshFI | GGCC | 1 cut(s) | 59 |
| BsiEI | CGRYCG | 1 cut(s) | 60 |
| BsmAI | GTCTC | 1 cut(s) | 49 |
| BsnI | GGCC | 1 cut(s) | 59 |
| Bso31I | GGTCTC | 1 cut(s) | 49 |
| Bsp1286I | GDGCHC | 1 cut(s) | 56 |
| Bsp143I | GATC | 1 cut(s) | 75 |
| BspACI | CCGC | 2 cut(s) | 60, 230 |
| BspANI | GGCC | 1 cut(s) | 59 |
| BspCNI | CTCAG | 1 cut(s) | 61 |
| BspPI | GGATC | 1 cut(s) | 83 |
| BspQI | GCTCTTC | 1 cut(s) | 228 |
| BspTNI | GGTCTC | 1 cut(s) | 49 |
| BsrBI | CCGCTC | 1 cut(s) | 62 |
| BssMI | GATC | 1 cut(s) | 75 |
| Bst2UI | CCWGG | 1 cut(s) | 121 |
| Bst4CI | ACNGT | 1 cut(s) | 110 |
| Bst6I | CTCTTC | 1 cut(s) | 228 |
| BstDEI | CTNAG | 1 cut(s) | 48 |
| BstF5I | GGATG | 1 cut(s) | 267 |
| BstKTI | GATC | 1 cut(s) | 78 |
| BstMAI | GTCTC | 1 cut(s) | 49 |
| BstMBI | GATC | 1 cut(s) | 75 |
| BstMCI | CGRYCG | 1 cut(s) | 60 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 227 |
| BstNI | CCWGG | 1 cut(s) | 121 |
| BstSCI | CCNGG | 1 cut(s) | 119 |
| BstSFI | CTRYAG | 1 cut(s) | 27 |
| BstSLI | GKGCMC | 1 cut(s) | 56 |
| BstX2I | RGATCY | 1 cut(s) | 75 |
| BstYI | RGATCY | 1 cut(s) | 75 |
| BstZI | CGGCCG | 1 cut(s) | 57 |
| BsuI | GTATCC | 1 cut(s) | 160 |
| BsuRI | GGCC | 1 cut(s) | 59 |
| BtsCI | GGATG | 1 cut(s) | 267 |
| BtsIMutI | CAGTG | 1 cut(s) | 99 |
| Cfr13I | GGNCC | 1 cut(s) | 123 |
| CviAII | CATG | 1 cut(s) | 250 |
| CviJI | RGCY | 5 cut(s) | 59, 188, 236, 242, 254 |
| CviKI_1 | RGCY | 5 cut(s) | 59, 188, 236, 242, 254 |
| DdeI | CTNAG | 1 cut(s) | 48 |
| DpnI | GATC | 1 cut(s) | 77 |
| DpnII | GATC | 1 cut(s) | 75 |
| EaeI | YGGCCR | 1 cut(s) | 57 |
| EagI | CGGCCG | 1 cut(s) | 57 |
| Eam1104I | CTCTTC | 1 cut(s) | 228 |
| EarI | CTCTTC | 1 cut(s) | 228 |
| EclXI | CGGCCG | 1 cut(s) | 57 |
| Eco31I | GGTCTC | 1 cut(s) | 49 |
| Eco47I | GGWCC | 1 cut(s) | 123 |
| Eco52I | CGGCCG | 1 cut(s) | 57 |
| EcoRII | CCWGG | 1 cut(s) | 119 |
| FaeI | CATG | 1 cut(s) | 253 |
| FaiI | YATR | 2 cut(s) | 251, 273 |
| FatI | CATG | 1 cut(s) | 249 |
| Fnu4HI | GCNGC | 1 cut(s) | 60 |
| FokI | GGATG | 1 cut(s) | 254 |
| Fsp4HI | GCNGC | 1 cut(s) | 60 |
| FspBI | CTAG | 1 cut(s) | 189 |
| GluI | GCNGC | 1 cut(s) | 60 |
| GsaI | CCCAGC | 1 cut(s) | 246 |
| HaeIII | GGCC | 1 cut(s) | 59 |
| Hin1II | CATG | 1 cut(s) | 253 |
| Hpy188I | TCNGA | 1 cut(s) | 261 |
| Hpy99I | CGWCG | 1 cut(s) | 145 |
| HpyAV | CCTTC | 1 cut(s) | 93 |
| HpyCH4III | ACNGT | 1 cut(s) | 110 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 227 |
| HpyF3I | CTNAG | 1 cut(s) | 48 |
| Hsp92II | CATG | 1 cut(s) | 253 |
| Kzo9I | GATC | 1 cut(s) | 75 |
| LguI | GCTCTTC | 1 cut(s) | 228 |
| LpnPI | CCDG | 8 cut(s) | 26, 35, 39, 106, 120, 133, 159, 228 |
| LweI | GCATC | 1 cut(s) | 103 |
| MaeI | CTAG | 1 cut(s) | 189 |
| MalI | GATC | 1 cut(s) | 77 |
| MbiI | CCGCTC | 1 cut(s) | 62 |
| MboI | GATC | 1 cut(s) | 75 |
| MboII | GAAGA | 3 cut(s) | 204, 207, 215 |
| MflI | RGATCY | 1 cut(s) | 75 |
| MhlI | GDGCHC | 1 cut(s) | 56 |
| MluCI | AATT | 2 cut(s) | 8, 193 |
| MnlI | CCTC | 2 cut(s) | 127, 226 |
| MseI | TTAA | 2 cut(s) | 162, 298 |
| MspR9I | CCNGG | 1 cut(s) | 121 |
| MvaI | CCWGG | 1 cut(s) | 121 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 227 |
| NdeII | GATC | 1 cut(s) | 75 |
| NlaIII | CATG | 1 cut(s) | 253 |
| PciSI | GCTCTTC | 1 cut(s) | 228 |
| PfoI | TCCNGGA | 1 cut(s) | 119 |
| PkrI | GCNGC | 1 cut(s) | 61 |
| Psp6I | CCWGG | 1 cut(s) | 119 |
| PspFI | CCCAGC | 1 cut(s) | 242 |
| PspGI | CCWGG | 1 cut(s) | 119 |
| PspPI | GGNCC | 1 cut(s) | 123 |
| PsuI | RGATCY | 1 cut(s) | 75 |
| SapI | GCTCTTC | 1 cut(s) | 228 |
| SaqAI | TTAA | 2 cut(s) | 162, 298 |
| SatI | GCNGC | 1 cut(s) | 60 |
| Sau3AI | GATC | 1 cut(s) | 75 |
| Sau96I | GGNCC | 1 cut(s) | 123 |
| ScrFI | CCNGG | 1 cut(s) | 121 |
| SduI | GDGCHC | 1 cut(s) | 56 |
| SetI | ASST | 2 cut(s) | 139, 244 |
| SfaNI | GCATC | 1 cut(s) | 103 |
| SfcI | CTRYAG | 1 cut(s) | 27 |
| SinI | GGWCC | 1 cut(s) | 123 |
| Sse9I | AATT | 2 cut(s) | 8, 193 |
| SsiI | CCGC | 2 cut(s) | 60, 230 |
| SspMI | CTAG | 1 cut(s) | 189 |
| StyD4I | CCNGG | 1 cut(s) | 119 |
| TaaI | ACNGT | 1 cut(s) | 110 |
| TaqI | TCGA | 1 cut(s) | 140 |
| TasI | AATT | 2 cut(s) | 8, 193 |
| TauI | GCSGC | 1 cut(s) | 62 |
| Tru1I | TTAA | 2 cut(s) | 162, 298 |
| Tru9I | TTAA | 2 cut(s) | 162, 298 |
| TscAI | CASTG | 1 cut(s) | 99 |
| TspRI | CASTG | 1 cut(s) | 99 |
| VpaK11BI | GGWCC | 1 cut(s) | 123 |
| XapI | RAATTY | 1 cut(s) | 8 |
| XspI | CTAG | 1 cut(s) | 189 |