FvH4_5g35622

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000093
Physical Location & Seq
Forward (+)
26072728 .. 26078045
5318 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35622.t1

Sequence Viewer

Length: 1251 bp
ATGGCATTGGTGGCTGGCCTGTTGCAGCCACGGGCAGAACTCGCGGCGTTTGATCAAACATCACCAACAAGAACCAACACTGCTAAAATTCGATTACCTTGTTGTGCTTACTATCACATTGAGCCTTTTTTGGAGGAAAATGATGTCACAACAATCAAGGCTATTCCAATTGGAAATGCAGATGATGATGATGCATTGGTGTGGCCTCATACGAAGTCGGGAAACTATTCTGTAAAAAGTGGCTATCATAAGCTTTTCAAATTCCAGAAGAAGCCGCATCCAAGCTTGGCTCCCAAGATTGCTAACTTCATGTGGAGAGCGTTGTCGAATGCCCTGCCTTCCATGTGGTATCTCTTCCAAAGGAAAATTGTGAAAACTCCAATTTGTGGTATATGTGGTGATTATCCAGAGACGATTGAGCATTGCTTGTTTCATTGTCCCTGGACTTTAGCTATGTGGTTCGGGTGCTCCCTAGGCTACATTCCTGACAGGGGAAGGATTTCTCATCTTGAGGAGTGGTTGTTGGAGATTCATAAGAATGCTGGTATGTTTTCTTGTGAAAGAGAGGATGTGTTTAATCTTGTCTGTTTGCATTTGTGGGAGATTTGGAAGCACAAGTGTTCAGTGATTATGAGAAATAGTACTCCAAACCCTAGTCTTGTCAATGAAAATATTCAAAGAGGTATTTTGAACTGGGAAGAAGCTAGGATGTCTATGGTTCAACCCTCTCAGTCTATTCCAAGACCCATTTCTTTGTGGGTTCCCCCTCTTGTAAATGTGGTGAAAATCAATTTTGATGGTGCCTGGAAGGAGTCAAACCACAACAGTGGCTTGGGAATTATTATTTGCAGCCATATGGGTGTGTCTATTGCAGGGGCTAGCCTTTTTCGGTCTTACAATTCAACTGTAGAAGCTGAGGCTAAGGCTCTTCTTTGTGGTGTCAAAATGGCGGTGGTTCTGAAATTGGAGCATATTATTGTCGAAGGGGATTGTCAAGAGGTGATCAAGGCTCTAAATGAGTCTTTAGCTTCTCCTTGTTGGAGAATCTCCCCTATCCTAAAGAAGGTCGCTCACTTGGTGCCACTTTTCAGAAGGATTCATTGGAACTGGGTTCCACGAGAAGCTAACCGCCTTGCAAATGCAGCGGCTAAGCTTGCCATCCAGAGTTTGTGCTCTCAAGAATGGGCCAACAGGCCTCCAAACTCTTTGATCAATGTTTTAAGGAGTGATGGATTGCCTGGTCCTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

417

Amino Acids

46.87

Weight (kDa)

8.66

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 76 - 153 5.5e-12 zinc-binding in reverse transcriptase
RVT_3 PF13456 264 - 386 9.1e-27 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 800, 1078
AccB7I CCANNNNNTGG 1 cut(s) 386
AccII CGCG 1 cut(s) 44
AciI CCGC 5 cut(s) 44, 275, 950, 1129, 1145
AcsI RAATTY 2 cut(s) 87, 260
AdeI CACNNNGTG 1 cut(s) 1078
AfaI GTAC 1 cut(s) 643
AfiI CCNNNNNNNGG 3 cut(s) 386, 491, 1063
AgsI TTSAA 5 cut(s) 259, 677, 691, 722, 903
AjnI CCWGG 3 cut(s) 440, 803, 1237
AjuI GAANNNNNNNTTGG 4 cut(s) 733, 765, 1084, 1116
AleI CACNNNNGTG 1 cut(s) 825
AluBI AGCT 8 cut(s) 253, 285, 452, 704, 914, 1028, 1124, 1153
AluI AGCT 8 cut(s) 253, 285, 452, 704, 914, 1028, 1124, 1153
Alw21I GWGCWC 2 cut(s) 470, 1175
Alw26I GTCTC 1 cut(s) 404
AoxI GGCC 4 cut(s) 16, 203, 1185, 1193
ApeKI GCWGC 3 cut(s) 25, 849, 1142
ApoI RAATTY 2 cut(s) 87, 260
Asp700I GAANNNNTTC 3 cut(s) 226, 499, 672
AspA2I CCTAGG 1 cut(s) 472
AspS9I GGNCC 2 cut(s) 1185, 1241
AsuHPI GGTGA 4 cut(s) 54, 410, 793, 1012
AsuNHI GCTAGC 1 cut(s) 878
AvaII GGWCC 1 cut(s) 1241
AvrII CCTAGG 1 cut(s) 472
BanI GGYRCC 2 cut(s) 800, 1078
BauI CACGAG 1 cut(s) 1116
Bbv12I GWGCWC 2 cut(s) 470, 1175
BbvCI CCTCAGC 1 cut(s) 915
BbvI GCAGC 3 cut(s) 37, 861, 1154
BccI CCATC 3 cut(s) 791, 1166, 1223
BcgI CGANNNNNNTGC 2 cut(s) 316, 350
BciT130I CCWGG 3 cut(s) 442, 805, 1239
BclI TGATCA 3 cut(s) 52, 1002, 1209
BcoDI GTCTC 1 cut(s) 404
BfaI CTAG 4 cut(s) 473, 654, 705, 879
BfmI CTRYAG 1 cut(s) 906
BisI GCNGC 6 cut(s) 26, 45, 275, 850, 1143, 1146
BlnI CCTAGG 1 cut(s) 472
BlpI GCTNAGC 1 cut(s) 1149
BlsI GCNGC 6 cut(s) 27, 46, 276, 851, 1144, 1147
BmcAI AGTACT 1 cut(s) 643
Bme1390I CCNGG 3 cut(s) 442, 805, 1239
Bme18I GGWCC 1 cut(s) 1241
BmgT120I GGNCC 2 cut(s) 1185, 1241
BmiI GGNNCC 5 cut(s) 291, 762, 802, 1080, 1113
BmrFI CCNGG 3 cut(s) 442, 805, 1239
BmrI ACTGGG 2 cut(s) 703, 1117
BmsI GCATC 2 cut(s) 181, 286
BmtI GCTAGC 1 cut(s) 882
BmuI ACTGGG 2 cut(s) 703, 1117
Bpu10I CCTNAGC 2 cut(s) 915, 921
Bpu1102I GCTNAGC 1 cut(s) 1149
BpuEI CTTGAG 2 cut(s) 530, 1161
BsaJI CCNNGG 3 cut(s) 29, 440, 472
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 3 cut(s) 386, 491, 1063
Bse1I ACTGG 2 cut(s) 698, 1112
Bse3DI GCAATG 1 cut(s) 421
BseBI CCWGG 3 cut(s) 442, 805, 1239
BseDI CCNNGG 3 cut(s) 29, 440, 472
BseGI GGATG 4 cut(s) 277, 574, 714, 1158
BseLI CCNNNNNNNGG 3 cut(s) 386, 491, 1063
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 2 cut(s) 743, 906
BseNI ACTGG 2 cut(s) 698, 1112
BseRI GAGGAG 1 cut(s) 527
BseXI GCAGC 3 cut(s) 37, 861, 1154
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 4 cut(s) 18, 205, 1187, 1195
BshNI GGYRCC 2 cut(s) 800, 1078
BsiHKAI GWGCWC 2 cut(s) 470, 1175
BslFI GGGAC 1 cut(s) 423
BslI CCNNNNNNNGG 3 cut(s) 386, 491, 1063
BsmAI GTCTC 1 cut(s) 404
BsmBI CGTCTC 1 cut(s) 404
BsmFI GGGAC 1 cut(s) 423
BsmI GAATGC 2 cut(s) 334, 544
BsnI GGCC 4 cut(s) 18, 205, 1187, 1195
Bsp1286I GDGCHC 2 cut(s) 470, 1175
Bsp143I GATC 3 cut(s) 52, 1002, 1209
Bsp1720I GCTNAGC 1 cut(s) 1149
BspACI CCGC 5 cut(s) 44, 275, 950, 1129, 1145
BspANI GGCC 4 cut(s) 18, 205, 1187, 1195
BspCNI CTCAG 2 cut(s) 742, 907
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 5 cut(s) 291, 762, 802, 1080, 1113
BspOI GCTAGC 1 cut(s) 882
BspQI GCTCTTC 1 cut(s) 933
BspT107I GGYRCC 2 cut(s) 800, 1078
BsrDI GCAATG 1 cut(s) 421
BsrI ACTGG 2 cut(s) 698, 1112
BssECI CCNNGG 3 cut(s) 29, 440, 472
BssMI GATC 3 cut(s) 52, 1002, 1209
BssSI CACGAG 1 cut(s) 1116
BssT1I CCWWGG 1 cut(s) 472
Bst2BI CACGAG 1 cut(s) 1116
Bst2UI CCWGG 3 cut(s) 442, 805, 1239
Bst4CI ACNGT 2 cut(s) 827, 907
Bst6I CTCTTC 2 cut(s) 359, 933
BstC8I GCNNGC 3 cut(s) 16, 880, 1155
BstDEI CTNAG 4 cut(s) 729, 915, 921, 1149
BstDSI CCRYGG 1 cut(s) 29
BstENI CCTNNNNNAGG 1 cut(s) 1061
BstF5I GGATG 4 cut(s) 277, 574, 714, 1158
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 3 cut(s) 55, 1005, 1212
BstMAI GTCTC 1 cut(s) 404
BstMBI GATC 3 cut(s) 52, 1002, 1209
BstMWI GCNNNNNNNGC 5 cut(s) 11, 41, 474, 1142, 1154
BstNI CCWGG 3 cut(s) 442, 805, 1239
BstSCI CCNGG 3 cut(s) 440, 803, 1237
BstSFI CTRYAG 1 cut(s) 906
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 3 cut(s) 37, 861, 1154
BstXI CCANNNNNNTGG 1 cut(s) 827
BsuRI GGCC 4 cut(s) 18, 205, 1187, 1195
BtgI CCRYGG 1 cut(s) 29
BtsCI GGATG 4 cut(s) 277, 574, 714, 1158
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 3 cut(s) 78, 630, 832
Cac8I GCNNGC 3 cut(s) 16, 880, 1155
Cfr13I GGNCC 2 cut(s) 1185, 1241
Csp6I GTAC 1 cut(s) 642
CviAII CATG 2 cut(s) 310, 343
CviQI GTAC 1 cut(s) 642
DdeI CTNAG 4 cut(s) 729, 915, 921, 1149
DpnI GATC 3 cut(s) 54, 1004, 1211
DpnII GATC 3 cut(s) 52, 1002, 1209
DraIII CACNNNGTG 1 cut(s) 1078
Eam1104I CTCTTC 2 cut(s) 359, 933
EarI CTCTTC 2 cut(s) 359, 933
Eco130I CCWWGG 1 cut(s) 472
Eco147I AGGCCT 1 cut(s) 1195
Eco47I GGWCC 1 cut(s) 1241
EcoNI CCTNNNNNAGG 1 cut(s) 1061
EcoRII CCWGG 3 cut(s) 440, 803, 1237
EcoT14I CCWWGG 1 cut(s) 472
EcoT22I ATGCAT 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 472
Esp3I CGTCTC 1 cut(s) 404
FaeI CATG 2 cut(s) 313, 346
FaqI GGGAC 1 cut(s) 423
FatI CATG 2 cut(s) 309, 342
FauNDI CATATG 1 cut(s) 855
FbaI TGATCA 3 cut(s) 52, 1002, 1209
Fnu4HI GCNGC 6 cut(s) 26, 45, 275, 850, 1143, 1146
FokI GGATG 4 cut(s) 264, 581, 721, 1145
Fsp4HI GCNGC 6 cut(s) 26, 45, 275, 850, 1143, 1146
FspBI CTAG 4 cut(s) 473, 654, 705, 879
GluI GCNGC 6 cut(s) 26, 45, 275, 850, 1143, 1146
HaeIII GGCC 4 cut(s) 18, 205, 1187, 1195
Hin1II CATG 2 cut(s) 313, 346
HindIII AAGCTT 3 cut(s) 251, 283, 1151
HinfI GANTC 5 cut(s) 529, 812, 1019, 1044, 1096
HphI GGTGA 4 cut(s) 54, 410, 793, 1012
Hpy188I TCNGA 2 cut(s) 960, 1091
Hpy188III TCNNGA 8 cut(s) 219, 265, 407, 485, 509, 995, 1162, 1178
HpyAV CCTTC 6 cut(s) 348, 489, 802, 977, 1057, 1086
HpyCH4III ACNGT 2 cut(s) 827, 907
HpyCH4V TGCA 8 cut(s) 25, 179, 194, 592, 849, 872, 1136, 1142
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 41, 474, 1142, 1154
HpyF3I CTNAG 4 cut(s) 729, 915, 921, 1149
Hsp92II CATG 2 cut(s) 313, 346
Ksp22I TGATCA 3 cut(s) 52, 1002, 1209
Kzo9I GATC 3 cut(s) 52, 1002, 1209
LguI GCTCTTC 1 cut(s) 933
LmnI GCTCC 3 cut(s) 295, 473, 967
Lsp1109I GCAGC 3 cut(s) 37, 861, 1154
LweI GCATC 2 cut(s) 181, 286
MaeI CTAG 4 cut(s) 473, 654, 705, 879
MaeIII GTNAC 1 cut(s) 145
MalI GATC 3 cut(s) 54, 1004, 1211
MboI GATC 3 cut(s) 52, 1002, 1209
MboII GAAGA 4 cut(s) 280, 346, 710, 920
MfeI CAATTG 1 cut(s) 168
MhlI GDGCHC 2 cut(s) 470, 1175
MluCI AATT 9 cut(s) 87, 168, 260, 366, 381, 790, 837, 898, 962
MlyI GAGTC 2 cut(s) 821, 1028
MmeI TCCRAC 2 cut(s) 504, 1019
Mph1103I ATGCAT 1 cut(s) 196
MroXI GAANNNNTTC 3 cut(s) 226, 499, 672
MseI TTAA 3 cut(s) 576, 1220, 1249
MslI CAYNNNNRTG 4 cut(s) 199, 537, 825, 858
MspA1I CMGCKG 1 cut(s) 1145
MspR9I CCNGG 3 cut(s) 442, 805, 1239
MunI CAATTG 1 cut(s) 168
Mva1269I GAATGC 2 cut(s) 334, 544
MvaI CCWGG 3 cut(s) 442, 805, 1239
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 5 cut(s) 11, 41, 474, 1142, 1154
NdeI CATATG 1 cut(s) 855
NdeII GATC 3 cut(s) 52, 1002, 1209
NheI GCTAGC 1 cut(s) 878
NlaIII CATG 2 cut(s) 313, 346
NlaIV GGNNCC 5 cut(s) 291, 762, 802, 1080, 1113
NmuCI GTSAC 1 cut(s) 145
NsiI ATGCAT 1 cut(s) 196
OliI CACNNNNGTG 1 cut(s) 825
PceI AGGCCT 1 cut(s) 1195
PciSI GCTCTTC 1 cut(s) 933
PctI GAATGC 2 cut(s) 334, 544
PdmI GAANNNNTTC 3 cut(s) 226, 499, 672
PfeI GAWTC 3 cut(s) 529, 1044, 1096
PflMI CCANNNNNTGG 1 cut(s) 386
PkrI GCNGC 6 cut(s) 27, 46, 276, 851, 1144, 1147
PleI GAGTC 2 cut(s) 820, 1027
PpsI GAGTC 2 cut(s) 820, 1027
Psp6I CCWGG 3 cut(s) 440, 803, 1237
PspGI CCWGG 3 cut(s) 440, 803, 1237
PspN4I GGNNCC 5 cut(s) 291, 762, 802, 1080, 1113
PspPI GGNCC 2 cut(s) 1185, 1241
RsaI GTAC 1 cut(s) 643
RsaNI GTAC 1 cut(s) 642
RseI CAYNNNNRTG 4 cut(s) 199, 537, 825, 858
SapI GCTCTTC 1 cut(s) 933
SaqAI TTAA 3 cut(s) 576, 1220, 1249
SatI GCNGC 6 cut(s) 26, 45, 275, 850, 1143, 1146
Sau3AI GATC 3 cut(s) 52, 1002, 1209
Sau96I GGNCC 2 cut(s) 1185, 1241
ScaI AGTACT 1 cut(s) 643
SchI GAGTC 2 cut(s) 821, 1028
ScrFI CCNGG 3 cut(s) 442, 805, 1239
SduI GDGCHC 2 cut(s) 470, 1175
SfaNI GCATC 2 cut(s) 181, 286
SfcI CTRYAG 1 cut(s) 906
SinI GGWCC 1 cut(s) 1241
SmiMI CAYNNNNRTG 4 cut(s) 199, 537, 825, 858
SmlI CTYRAG 2 cut(s) 509, 1176
SmoI CTYRAG 2 cut(s) 509, 1176
Sse9I AATT 9 cut(s) 87, 168, 260, 366, 381, 790, 837, 898, 962
SseBI AGGCCT 1 cut(s) 1195
SsiI CCGC 5 cut(s) 44, 275, 950, 1129, 1145
SspI AATATT 1 cut(s) 673
SspMI CTAG 4 cut(s) 473, 654, 705, 879
StuI AGGCCT 1 cut(s) 1195
StyD4I CCNGG 3 cut(s) 440, 803, 1237
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 2 cut(s) 827, 907
TaqI TCGA 3 cut(s) 91, 326, 981
TaqII GACCGA 1 cut(s) 879
TasI AATT 9 cut(s) 87, 168, 260, 366, 381, 790, 837, 898, 962
TatI WGTACW 1 cut(s) 641
TauI GCSGC 3 cut(s) 47, 277, 1148
TfiI GAWTC 3 cut(s) 529, 1044, 1096
Tru1I TTAA 3 cut(s) 576, 1220, 1249
Tru9I TTAA 3 cut(s) 576, 1220, 1249
TscAI CASTG 3 cut(s) 85, 630, 832
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 3 cut(s) 25, 849, 1142
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 5 cut(s) 298, 422, 521, 681, 1088
TspRI CASTG 3 cut(s) 85, 630, 832
Van91I CCANNNNNTGG 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 1241
XagI CCTNNNNNAGG 1 cut(s) 1061
XapI RAATTY 2 cut(s) 87, 260
XmaJI CCTAGG 1 cut(s) 472
XmnI GAANNNNTTC 3 cut(s) 226, 499, 672
XspI CTAG 4 cut(s) 473, 654, 705, 879
ZrmI AGTACT 1 cut(s) 643
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.