pycom09g03880

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000093
Physical Location & Seq
Forward (+)
2894605 .. 2895741
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g03880.1

Sequence Viewer

Length: 1137 bp
ATGCATACTAAATGCAAAACAAGCAGGAGGGGAATAAGTACCGTTCTTACTCAAATCCCAGATAACTGGCTGCAAGGTAGATCACTGGCTAGGCGGGACAAGCGTCGGCCTTCTGTTCGTGGGGTTCCCAAGGCGTTTTGGAAGGGGATTTGGAAGCTGGAGGTGCCCCCCAAGTTGCGACATTTCTTGTGGCTTACGGTGCATAATTGTCTTCCTACTCGGGAAGCCTTGTACCGACGACGGTCCTCTCTGAACTCTACTTGTCCTATTTGCTGCTGCCATGATGAAACCATTGAGCACATTTTCCTTTCTTGCTCTTGGGTTGAGCCAATTTGGTTTGGTGGGGCTTTGGGGTATAAATTGGATCGTCTTTCTCTCCCGTCTTGGCTGGACTGGATTCAGAAGGTATTCTCTCCGTCTTTATGCAACTTTGGAGATACAATGTGGAGACAATCTTATATTGTTTTTACCTGTTGGTGTATTTGGAAAGCTCGTTGTGATTTTGTTTTCAAAGGGATGTCTGTTAACCCTTTAAAAGTCTTGGATGATGTTTCTGCGGCTATGAGCTCGTTTTTTGGTGCTAAGGCAATGGCTGGGGTTAGGGGAGGGGGTGACGGGAGGAGGGGTACCCAGGTGGCGCGGTGGTGTGCTCCGGCCTCTCCTTTTGTGAAGATTAATGTGGATGCTAGTTGGTCCAAGGCCTCAAAGATGGGATTTGTTGGATTGATTGCGCGGGACATGGAGAGAAAATTCGTGGCTGCAGCGCGGTATGCTATATCTGCTCCTTCTGCTGCTGCAGCGGAGGCTTATGCGTTGCTGTACGGGTGCCAACTTGGTGACGAGTTGGGAGTAAGGTATGTAATTCTTGAGTCGGACTCCCTTGAAGCGATTAATTGTTTATCTAGTTCGCTGTCTAGGGGTAGTTGGGAGGCTTTCCCGGTGCTGGCTCGGGTTAAACAACTGGGGGGGAAGTTCTTTGATTGCCGATGGTCTTGGGTGCCCCGTTCTGCTAATGGCGTGGCTCACAAGATTGCATCGGGTGGTTTTACGGAGATGAGTGATGTCGTTTGGGTCGTTAGGCCCCCATCTTCGTTGGTCTTTGTATTGAATAATGACGGACTACCTTGTCCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

379

Amino Acids

42.26

Weight (kDa)

9.51

Isoelectric Point (pI)

56.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 45 - 112 6.4e-19 zinc-binding in reverse transcriptase
RVT_3 PF13456 226 - 346 1e-14 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1125
Acc65I GGTACC 1 cut(s) 626
AccB1I GGYRCC 4 cut(s) 163, 626, 825, 997
AccII CGCG 3 cut(s) 640, 733, 766
AciI CCGC 6 cut(s) 94, 557, 640, 733, 766, 800
AclWI GGATC 1 cut(s) 372
AcsI RAATTY 1 cut(s) 749
AfaI GTAC 4 cut(s) 40, 233, 628, 821
AfiI CCNNNNNNNGG 1 cut(s) 943
AgsI TTSAA 3 cut(s) 511, 884, 1108
AjnI CCWGG 1 cut(s) 630
AluBI AGCT 3 cut(s) 157, 491, 567
AluI AGCT 3 cut(s) 157, 491, 567
Alw21I GWGCWC 3 cut(s) 300, 569, 652
Alw26I GTCTC 1 cut(s) 442
AlwI GGATC 1 cut(s) 372
Ama87I CYCGRG 2 cut(s) 219, 948
AoxI GGCC 4 cut(s) 107, 654, 699, 1079
ApeKI GCWGC 8 cut(s) 70, 273, 276, 758, 761, 791, 794, 797
ApoI RAATTY 1 cut(s) 749
AseI ATTAAT 2 cut(s) 675, 891
Asp700I GAANNNNTTC 1 cut(s) 407
Asp718I GGTACC 1 cut(s) 626
AspLEI GCGC 3 cut(s) 640, 733, 766
AspS9I GGNCC 3 cut(s) 243, 693, 1080
AsuC2I CCSGG 1 cut(s) 938
AsuHPI GGTGA 2 cut(s) 623, 848
AvaI CYCGRG 2 cut(s) 219, 948
AvaII GGWCC 2 cut(s) 243, 693
BaeGI GKGCMC 2 cut(s) 168, 1002
BaeI ACNNNNGTAYC 2 cut(s) 618, 651
BanI GGYRCC 4 cut(s) 163, 626, 825, 997
BanII GRGCYC 1 cut(s) 569
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 3 cut(s) 300, 569, 652
BbvI GCAGC 8 cut(s) 57, 260, 263, 745, 773, 778, 781, 809
BccI CCATC 3 cut(s) 703, 981, 1093
BciT130I CCWGG 1 cut(s) 632
BcnI CCSGG 1 cut(s) 938
BcoDI GTCTC 1 cut(s) 442
BfaI CTAG 4 cut(s) 90, 687, 903, 915
BfmI CTRYAG 2 cut(s) 759, 795
BisI GCNGC 9 cut(s) 71, 274, 277, 558, 759, 762, 792, 795, 798
BlsI GCNGC 9 cut(s) 72, 275, 278, 559, 760, 763, 793, 796, 799
Bme1390I CCNGG 2 cut(s) 632, 938
Bme18I GGWCC 2 cut(s) 243, 693
BmeT110I CYCGRG 2 cut(s) 219, 948
BmgT120I GGNCC 3 cut(s) 243, 693, 1080
BmiI GGNNCC 6 cut(s) 126, 165, 628, 827, 999, 1082
BmrFI CCNGG 2 cut(s) 632, 938
BmrI ACTGGG 1 cut(s) 971
BmsI GCATC 2 cut(s) 673, 1043
BmuI ACTGGG 1 cut(s) 971
BoxI GACNNNNGTC 2 cut(s) 102, 241
BpiI GAAGAC 1 cut(s) 203
BplI GAGNNNNNCTC 2 cut(s) 860, 892
BpmI CTGGAG 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 887
BpuMI CCSGG 1 cut(s) 938
BsaJI CCNNGG 3 cut(s) 129, 630, 696
BsaXI ACNNNNNCTCC 2 cut(s) 610, 640
Bsc4I CCNNNNNNNGG 1 cut(s) 943
Bse1I ACTGG 4 cut(s) 71, 90, 398, 966
Bse3DI GCAATG 1 cut(s) 594
BseBI CCWGG 1 cut(s) 632
BseDI CCNNGG 3 cut(s) 129, 630, 696
BseGI GGATG 3 cut(s) 522, 550, 688
BseLI CCNNNNNNNGG 1 cut(s) 943
BseMI GCAATG 1 cut(s) 594
BseNI ACTGG 4 cut(s) 71, 90, 398, 966
BseRI GAGGAG 1 cut(s) 634
BseSI GKGCMC 2 cut(s) 168, 1002
BseXI GCAGC 8 cut(s) 57, 260, 263, 745, 773, 778, 781, 809
BseYI CCCAGC 1 cut(s) 593
Bsh1236I CGCG 3 cut(s) 640, 733, 766
BshFI GGCC 4 cut(s) 109, 656, 701, 1081
BshNI GGYRCC 4 cut(s) 163, 626, 825, 997
BsiHKAI GWGCWC 3 cut(s) 300, 569, 652
BsiHKCI CYCGRG 2 cut(s) 219, 948
BsiSI CCGG 2 cut(s) 653, 938
BslFI GGGAC 2 cut(s) 110, 749
BslI CCNNNNNNNGG 1 cut(s) 943
BsmAI GTCTC 1 cut(s) 442
BsmFI GGGAC 2 cut(s) 110, 749
BsnI GGCC 4 cut(s) 109, 656, 701, 1081
BsoBI CYCGRG 2 cut(s) 219, 948
Bsp1286I GDGCHC 5 cut(s) 168, 300, 569, 652, 1002
Bsp143I GATC 2 cut(s) 80, 364
BspACI CCGC 6 cut(s) 94, 557, 640, 733, 766, 800
BspANI GGCC 4 cut(s) 109, 656, 701, 1081
BspFNI CGCG 3 cut(s) 640, 733, 766
BspLI GGNNCC 6 cut(s) 126, 165, 628, 827, 999, 1082
BspMAI CTGCAG 2 cut(s) 763, 799
BspPI GGATC 1 cut(s) 372
BspT107I GGYRCC 4 cut(s) 163, 626, 825, 997
BsrDI GCAATG 1 cut(s) 594
BsrI ACTGG 4 cut(s) 71, 90, 398, 966
BssECI CCNNGG 3 cut(s) 129, 630, 696
BssMI GATC 2 cut(s) 80, 364
BssT1I CCWWGG 2 cut(s) 129, 696
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 3 cut(s) 43, 199, 243
BstC8I GCNNGC 1 cut(s) 945
BstDEI CTNAG 1 cut(s) 582
BstF5I GGATG 3 cut(s) 522, 550, 688
BstFNI CGCG 3 cut(s) 640, 733, 766
BstHHI GCGC 3 cut(s) 640, 733, 766
BstKTI GATC 2 cut(s) 83, 367
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 2 cut(s) 80, 364
BstMWI GCNNNNNNNGC 9 cut(s) 21, 100, 163, 199, 770, 779, 788, 797, 803
BstNI CCWGG 1 cut(s) 632
BstPAI GACNNNNGTC 2 cut(s) 102, 241
BstSCI CCNGG 2 cut(s) 630, 936
BstSFI CTRYAG 2 cut(s) 759, 795
BstSLI GKGCMC 2 cut(s) 168, 1002
BstUI CGCG 3 cut(s) 640, 733, 766
BstV1I GCAGC 8 cut(s) 57, 260, 263, 745, 773, 778, 781, 809
BstV2I GAAGAC 1 cut(s) 203
BstXI CCANNNNNNTGG 1 cut(s) 66
BsuRI GGCC 4 cut(s) 109, 656, 701, 1081
BtsCI GGATG 3 cut(s) 522, 550, 688
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 1 cut(s) 945
CfoI GCGC 3 cut(s) 640, 733, 766
Cfr13I GGNCC 3 cut(s) 243, 693, 1080
CseI GACGC 1 cut(s) 92
Csp6I GTAC 4 cut(s) 39, 232, 627, 820
CviAII CATG 2 cut(s) 281, 739
CviQI GTAC 4 cut(s) 39, 232, 627, 820
DdeI CTNAG 1 cut(s) 582
DpnI GATC 2 cut(s) 82, 366
DpnII GATC 2 cut(s) 80, 364
DraI TTTAAA 1 cut(s) 534
DrdI GACNNNNNNGTC 1 cut(s) 1125
DseDI GACNNNNNNGTC 1 cut(s) 1125
Ecl136II GAGCTC 1 cut(s) 567
Eco130I CCWWGG 2 cut(s) 129, 696
Eco147I AGGCCT 1 cut(s) 701
Eco24I GRGCYC 1 cut(s) 569
Eco47I GGWCC 2 cut(s) 243, 693
Eco53kI GAGCTC 1 cut(s) 567
Eco88I CYCGRG 2 cut(s) 219, 948
EcoICRI GAGCTC 1 cut(s) 567
EcoO109I RGGNCCY 1 cut(s) 1080
EcoRII CCWGG 1 cut(s) 630
EcoT14I CCWWGG 2 cut(s) 129, 696
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 569
ErhI CCWWGG 2 cut(s) 129, 696
FaeI CATG 2 cut(s) 284, 742
FaqI GGGAC 2 cut(s) 110, 749
FatI CATG 2 cut(s) 280, 738
FauI CCCGC 2 cut(s) 87, 726
Fnu4HI GCNGC 9 cut(s) 71, 274, 277, 558, 759, 762, 792, 795, 798
FokI GGATG 3 cut(s) 529, 557, 695
FriOI GRGCYC 1 cut(s) 569
Fsp4HI GCNGC 9 cut(s) 71, 274, 277, 558, 759, 762, 792, 795, 798
FspBI CTAG 4 cut(s) 90, 687, 903, 915
GlaI GCGC 3 cut(s) 639, 732, 765
GluI GCNGC 9 cut(s) 71, 274, 277, 558, 759, 762, 792, 795, 798
GsaI CCCAGC 1 cut(s) 597
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 4 cut(s) 109, 656, 701, 1081
HapII CCGG 2 cut(s) 653, 938
HgaI GACGC 1 cut(s) 92
HhaI GCGC 3 cut(s) 640, 733, 766
Hin1II CATG 2 cut(s) 284, 742
Hin6I GCGC 3 cut(s) 638, 731, 764
HinP1I GCGC 3 cut(s) 638, 731, 764
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 3 cut(s) 397, 869, 875
HpaI GTTAAC 1 cut(s) 526
HpaII CCGG 2 cut(s) 653, 938
HphI GGTGA 2 cut(s) 623, 848
Hpy166II GTNNAC 1 cut(s) 526
Hpy188I TCNGA 3 cut(s) 252, 402, 874
Hpy188III TCNNGA 2 cut(s) 221, 866
Hpy8I GTNNAC 1 cut(s) 526
Hpy99I CGWCG 3 cut(s) 108, 240, 243
HpyAV CCTTC 4 cut(s) 120, 136, 397, 795
HpyCH4III ACNGT 3 cut(s) 43, 199, 243
HpyCH4V TGCA 8 cut(s) 4, 15, 73, 202, 426, 761, 797, 1034
HpyF10VI GCNNNNNNNGC 9 cut(s) 21, 100, 163, 199, 770, 779, 788, 797, 803
HpyF3I CTNAG 1 cut(s) 582
Hsp92II CATG 2 cut(s) 284, 742
HspAI GCGC 3 cut(s) 638, 731, 764
KpnI GGTACC 1 cut(s) 630
KspAI GTTAAC 1 cut(s) 526
Kzo9I GATC 2 cut(s) 80, 364
LmnI GCTCC 2 cut(s) 655, 787
Lsp1109I GCAGC 8 cut(s) 57, 260, 263, 745, 773, 778, 781, 809
LweI GCATC 2 cut(s) 673, 1043
MaeI CTAG 4 cut(s) 90, 687, 903, 915
MaeIII GTNAC 2 cut(s) 611, 836
MalI GATC 2 cut(s) 82, 366
MboI GATC 2 cut(s) 80, 364
MboII GAAGA 3 cut(s) 203, 682, 1080
MhlI GDGCHC 5 cut(s) 168, 300, 569, 652, 1002
MluCI AATT 6 cut(s) 205, 330, 359, 749, 861, 892
MlyI GAGTC 2 cut(s) 869, 878
MmeI TCCRAC 2 cut(s) 700, 852
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 407
MseI TTAA 6 cut(s) 525, 533, 675, 891, 954, 1135
MspA1I CMGCKG 1 cut(s) 800
MspI CCGG 2 cut(s) 653, 938
MspR9I CCNGG 2 cut(s) 632, 938
MvaI CCWGG 1 cut(s) 632
MvnI CGCG 3 cut(s) 640, 733, 766
MwoI GCNNNNNNNGC 9 cut(s) 21, 100, 163, 199, 770, 779, 788, 797, 803
NciI CCSGG 1 cut(s) 938
NdeII GATC 2 cut(s) 80, 364
NlaIII CATG 2 cut(s) 284, 742
NlaIV GGNNCC 6 cut(s) 126, 165, 628, 827, 999, 1082
NmuCI GTSAC 2 cut(s) 611, 836
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 701
PcsI WCGNNNNNNNCGW 1 cut(s) 1071
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 9 cut(s) 72, 275, 278, 559, 760, 763, 793, 796, 799
PleI GAGTC 2 cut(s) 869, 877
PpsI GAGTC 2 cut(s) 869, 877
PshAI GACNNNNGTC 2 cut(s) 102, 241
PshBI ATTAAT 2 cut(s) 675, 891
Psp124BI GAGCTC 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 630
PspFI CCCAGC 1 cut(s) 593
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 6 cut(s) 126, 165, 628, 827, 999, 1082
PspPI GGNCC 3 cut(s) 243, 693, 1080
PstI CTGCAG 2 cut(s) 763, 799
RsaI GTAC 4 cut(s) 40, 233, 628, 821
RsaNI GTAC 4 cut(s) 39, 232, 627, 820
SacI GAGCTC 1 cut(s) 569
SaqAI TTAA 6 cut(s) 525, 533, 675, 891, 954, 1135
SatI GCNGC 9 cut(s) 71, 274, 277, 558, 759, 762, 792, 795, 798
Sau3AI GATC 2 cut(s) 80, 364
Sau96I GGNCC 3 cut(s) 243, 693, 1080
SchI GAGTC 2 cut(s) 869, 878
ScrFI CCNGG 2 cut(s) 632, 938
SduI GDGCHC 5 cut(s) 168, 300, 569, 652, 1002
SfaNI GCATC 2 cut(s) 673, 1043
SfcI CTRYAG 2 cut(s) 759, 795
SinI GGWCC 2 cut(s) 243, 693
SmlI CTYRAG 1 cut(s) 866
SmoI CTYRAG 1 cut(s) 866
Sse9I AATT 6 cut(s) 205, 330, 359, 749, 861, 892
SseBI AGGCCT 1 cut(s) 701
SsiI CCGC 6 cut(s) 94, 557, 640, 733, 766, 800
SspMI CTAG 4 cut(s) 90, 687, 903, 915
SstI GAGCTC 1 cut(s) 569
StuI AGGCCT 1 cut(s) 701
StyD4I CCNGG 2 cut(s) 630, 936
StyI CCWWGG 2 cut(s) 129, 696
TaaI ACNGT 3 cut(s) 43, 199, 243
TasI AATT 6 cut(s) 205, 330, 359, 749, 861, 892
TauI GCSGC 1 cut(s) 560
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 6 cut(s) 525, 533, 675, 891, 954, 1135
Tru9I TTAA 6 cut(s) 525, 533, 675, 891, 954, 1135
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 2 cut(s) 611, 836
TseI GCWGC 8 cut(s) 70, 273, 276, 758, 761, 791, 794, 797
Tsp45I GTSAC 2 cut(s) 611, 836
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 3 cut(s) 405, 1064, 1131
TspRI CASTG 1 cut(s) 90
VpaK11BI GGWCC 2 cut(s) 243, 693
VspI ATTAAT 2 cut(s) 675, 891
XapI RAATTY 1 cut(s) 749
XmnI GAANNNNTTC 1 cut(s) 407
XspI CTAG 4 cut(s) 90, 687, 903, 915
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.