ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 242 - 328 | 1.9e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 131, 268 |
| AcsI | RAATTY | 2 cut(s) | 241, 405 |
| AcuI | CTGAAG | 1 cut(s) | 519 |
| AfaI | GTAC | 1 cut(s) | 721 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 120 |
| AgsI | TTSAA | 3 cut(s) | 101, 111, 855 |
| AjnI | CCWGG | 2 cut(s) | 508, 960 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 307, 339 |
| AleI | CACNNNNGTG | 1 cut(s) | 586 |
| AluBI | AGCT | 8 cut(s) | 229, 263, 427, 647, 728, 797, 933, 968 |
| AluI | AGCT | 8 cut(s) | 229, 263, 427, 647, 728, 797, 933, 968 |
| Alw21I | GWGCWC | 1 cut(s) | 897 |
| AlwI | GGATC | 2 cut(s) | 131, 268 |
| AoxI | GGCC | 3 cut(s) | 689, 873, 978 |
| ApeKI | GCWGC | 3 cut(s) | 37, 880, 965 |
| ApoI | RAATTY | 2 cut(s) | 241, 405 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 988, 1020 |
| AseI | ATTAAT | 1 cut(s) | 27 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 28 |
| AspLEI | GCGC | 1 cut(s) | 519 |
| AspS9I | GGNCC | 2 cut(s) | 873, 942 |
| AsuC2I | CCSGG | 1 cut(s) | 144 |
| AsuHPI | GGTGA | 1 cut(s) | 654 |
| AvaII | GGWCC | 1 cut(s) | 942 |
| Bbv12I | GWGCWC | 1 cut(s) | 897 |
| BbvI | GCAGC | 3 cut(s) | 49, 892, 977 |
| BccI | CCATC | 1 cut(s) | 414 |
| BceAI | ACGGC | 1 cut(s) | 860 |
| BciT130I | CCWGG | 2 cut(s) | 510, 962 |
| BclI | TGATCA | 1 cut(s) | 567 |
| BcnI | CCSGG | 1 cut(s) | 144 |
| BfmI | CTRYAG | 1 cut(s) | 165 |
| BglII | AGATCT | 1 cut(s) | 541 |
| BisI | GCNGC | 3 cut(s) | 38, 881, 966 |
| BlsI | GCNGC | 3 cut(s) | 39, 882, 967 |
| Bme1390I | CCNGG | 3 cut(s) | 144, 510, 962 |
| Bme18I | GGWCC | 1 cut(s) | 942 |
| BmgT120I | GGNCC | 2 cut(s) | 873, 942 |
| BmrFI | CCNGG | 3 cut(s) | 144, 510, 962 |
| BmrI | ACTGGG | 1 cut(s) | 880 |
| BmsI | GCATC | 1 cut(s) | 504 |
| BmuI | ACTGGG | 1 cut(s) | 880 |
| BpmI | CTGGAG | 2 cut(s) | 55, 761 |
| BpuEI | CTTGAG | 3 cut(s) | 243, 530, 708 |
| BpuMI | CCSGG | 1 cut(s) | 144 |
| BsaBI | GATNNNNATC | 1 cut(s) | 278 |
| BsaJI | CCNNGG | 1 cut(s) | 509 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 712, 742 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 120 |
| Bse1I | ACTGG | 5 cut(s) | 99, 238, 476, 837, 875 |
| Bse8I | GATNNNNATC | 1 cut(s) | 278 |
| BseBI | CCWGG | 2 cut(s) | 510, 962 |
| BseDI | CCNNGG | 1 cut(s) | 509 |
| BseGI | GGATG | 1 cut(s) | 519 |
| BseJI | GATNNNNATC | 1 cut(s) | 278 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 120 |
| BseMII | CTCAG | 1 cut(s) | 386 |
| BseNI | ACTGG | 5 cut(s) | 99, 238, 476, 837, 875 |
| BseRI | GAGGAG | 1 cut(s) | 516 |
| BseXI | GCAGC | 3 cut(s) | 49, 892, 977 |
| BseYI | CCCAGC | 1 cut(s) | 933 |
| BsgI | GTGCAG | 1 cut(s) | 899 |
| BshFI | GGCC | 3 cut(s) | 691, 875, 980 |
| BsiHKAI | GWGCWC | 1 cut(s) | 897 |
| BsiSI | CCGG | 1 cut(s) | 143 |
| BslFI | GGGAC | 1 cut(s) | 478 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 120 |
| BsmFI | GGGAC | 1 cut(s) | 478 |
| BsnI | GGCC | 3 cut(s) | 691, 875, 980 |
| Bsp1286I | GDGCHC | 1 cut(s) | 897 |
| Bsp143I | GATC | 4 cut(s) | 123, 273, 541, 567 |
| BspANI | GGCC | 3 cut(s) | 691, 875, 980 |
| BspCNI | CTCAG | 1 cut(s) | 385 |
| BspPI | GGATC | 2 cut(s) | 131, 268 |
| BspQI | GCTCTTC | 1 cut(s) | 765 |
| BsrI | ACTGG | 5 cut(s) | 99, 238, 476, 837, 875 |
| BssECI | CCNNGG | 1 cut(s) | 509 |
| BssMI | GATC | 4 cut(s) | 123, 273, 541, 567 |
| Bst2UI | CCWGG | 2 cut(s) | 510, 962 |
| Bst4CI | ACNGT | 2 cut(s) | 169, 556 |
| Bst6I | CTCTTC | 1 cut(s) | 765 |
| BstC8I | GCNNGC | 1 cut(s) | 265 |
| BstDEI | CTNAG | 2 cut(s) | 372, 811 |
| BstF5I | GGATG | 1 cut(s) | 519 |
| BstHHI | GCGC | 1 cut(s) | 519 |
| BstKTI | GATC | 4 cut(s) | 126, 276, 544, 570 |
| BstMBI | GATC | 4 cut(s) | 123, 273, 541, 567 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 305, 644, 962 |
| BstNI | CCWGG | 2 cut(s) | 510, 962 |
| BstNSI | RCATGY | 1 cut(s) | 844 |
| BstSCI | CCNGG | 3 cut(s) | 142, 508, 960 |
| BstSFI | CTRYAG | 1 cut(s) | 165 |
| BstV1I | GCAGC | 3 cut(s) | 49, 892, 977 |
| BstX2I | RGATCY | 3 cut(s) | 123, 273, 541 |
| BstXI | CCANNNNNNTGG | 4 cut(s) | 509, 739, 919, 1014 |
| BstYI | RGATCY | 3 cut(s) | 123, 273, 541 |
| BsuRI | GGCC | 3 cut(s) | 691, 875, 980 |
| BtsCI | GGATG | 1 cut(s) | 519 |
| BtsIMutI | CAGTG | 3 cut(s) | 81, 92, 483 |
| Cac8I | GCNNGC | 1 cut(s) | 265 |
| CfoI | GCGC | 1 cut(s) | 519 |
| Cfr13I | GGNCC | 2 cut(s) | 873, 942 |
| Csp6I | GTAC | 1 cut(s) | 720 |
| CviAII | CATG | 2 cut(s) | 440, 841 |
| CviQI | GTAC | 1 cut(s) | 720 |
| DdeI | CTNAG | 2 cut(s) | 372, 811 |
| DpnI | GATC | 4 cut(s) | 125, 275, 543, 569 |
| DpnII | GATC | 4 cut(s) | 123, 273, 541, 567 |
| Eam1104I | CTCTTC | 1 cut(s) | 765 |
| EarI | CTCTTC | 1 cut(s) | 765 |
| Eco47I | GGWCC | 1 cut(s) | 942 |
| Eco57I | CTGAAG | 1 cut(s) | 519 |
| EcoRI | GAATTC | 2 cut(s) | 241, 405 |
| EcoRII | CCWGG | 2 cut(s) | 508, 960 |
| FaeI | CATG | 2 cut(s) | 443, 844 |
| FaqI | GGGAC | 1 cut(s) | 478 |
| FatI | CATG | 2 cut(s) | 439, 840 |
| FauNDI | CATATG | 2 cut(s) | 19, 975 |
| FbaI | TGATCA | 1 cut(s) | 567 |
| Fnu4HI | GCNGC | 3 cut(s) | 38, 881, 966 |
| FokI | GGATG | 1 cut(s) | 526 |
| Fsp4HI | GCNGC | 3 cut(s) | 38, 881, 966 |
| GlaI | GCGC | 1 cut(s) | 518 |
| GluI | GCNGC | 3 cut(s) | 38, 881, 966 |
| GsaI | CCCAGC | 1 cut(s) | 937 |
| GsuI | CTGGAG | 2 cut(s) | 55, 761 |
| HaeIII | GGCC | 3 cut(s) | 691, 875, 980 |
| HapII | CCGG | 1 cut(s) | 143 |
| HhaI | GCGC | 1 cut(s) | 519 |
| Hin1II | CATG | 2 cut(s) | 443, 844 |
| Hin6I | GCGC | 1 cut(s) | 517 |
| HinP1I | GCGC | 1 cut(s) | 517 |
| HincII | GTYRAC | 1 cut(s) | 838 |
| HindII | GTYRAC | 1 cut(s) | 838 |
| HindIII | AAGCTT | 1 cut(s) | 227 |
| HinfI | GANTC | 7 cut(s) | 86, 212, 330, 398, 496, 560, 821 |
| HpaI | GTTAAC | 1 cut(s) | 838 |
| HpaII | CCGG | 1 cut(s) | 143 |
| HphI | GGTGA | 1 cut(s) | 654 |
| Hpy166II | GTNNAC | 4 cut(s) | 161, 559, 838, 942 |
| Hpy188III | TCNNGA | 5 cut(s) | 209, 327, 402, 547, 740 |
| Hpy8I | GTNNAC | 4 cut(s) | 161, 559, 838, 942 |
| HpyAV | CCTTC | 2 cut(s) | 633, 703 |
| HpyCH4III | ACNGT | 2 cut(s) | 169, 556 |
| HpyCH4V | TGCA | 2 cut(s) | 348, 880 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 305, 644, 962 |
| HpyF3I | CTNAG | 2 cut(s) | 372, 811 |
| Hsp92II | CATG | 2 cut(s) | 443, 844 |
| HspAI | GCGC | 1 cut(s) | 517 |
| Ksp22I | TGATCA | 1 cut(s) | 567 |
| KspAI | GTTAAC | 1 cut(s) | 838 |
| Kzo9I | GATC | 4 cut(s) | 123, 273, 541, 567 |
| LguI | GCTCTTC | 1 cut(s) | 765 |
| LmnI | GCTCC | 2 cut(s) | 424, 733 |
| Lsp1109I | GCAGC | 3 cut(s) | 49, 892, 977 |
| LweI | GCATC | 1 cut(s) | 504 |
| MaeIII | GTNAC | 1 cut(s) | 133 |
| MalI | GATC | 4 cut(s) | 125, 275, 543, 569 |
| MboI | GATC | 4 cut(s) | 123, 273, 541, 567 |
| MboII | GAAGA | 3 cut(s) | 422, 525, 752 |
| MfeI | CAATTG | 2 cut(s) | 288, 571 |
| MflI | RGATCY | 3 cut(s) | 123, 273, 541 |
| MhlI | GDGCHC | 1 cut(s) | 897 |
| MlyI | GAGTC | 1 cut(s) | 554 |
| MmeI | TCCRAC | 2 cut(s) | 218, 853 |
| MnlI | CCTC | 7 cut(s) | 537, 602, 675, 736, 742, 871, 991 |
| MroXI | GAANNNNTTC | 1 cut(s) | 28 |
| MseI | TTAA | 6 cut(s) | 27, 254, 357, 521, 837, 908 |
| MslI | CAYNNNNRTG | 3 cut(s) | 438, 586, 917 |
| MspA1I | CMGCKG | 1 cut(s) | 968 |
| MspI | CCGG | 1 cut(s) | 143 |
| MspR9I | CCNGG | 3 cut(s) | 144, 510, 962 |
| MunI | CAATTG | 2 cut(s) | 288, 571 |
| MvaI | CCWGG | 2 cut(s) | 510, 962 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 305, 644, 962 |
| NciI | CCSGG | 1 cut(s) | 144 |
| NdeI | CATATG | 2 cut(s) | 19, 975 |
| NdeII | GATC | 4 cut(s) | 123, 273, 541, 567 |
| NlaIII | CATG | 2 cut(s) | 443, 844 |
| NspI | RCATGY | 1 cut(s) | 844 |
| OliI | CACNNNNGTG | 1 cut(s) | 586 |
| PciSI | GCTCTTC | 1 cut(s) | 765 |
| PdmI | GAANNNNTTC | 1 cut(s) | 28 |
| PfeI | GAWTC | 6 cut(s) | 86, 212, 330, 398, 496, 821 |
| PfoI | TCCNGGA | 1 cut(s) | 142 |
| PkrI | GCNGC | 3 cut(s) | 39, 882, 967 |
| PleI | GAGTC | 1 cut(s) | 554 |
| PpsI | GAGTC | 1 cut(s) | 554 |
| PshBI | ATTAAT | 1 cut(s) | 27 |
| Psp6I | CCWGG | 2 cut(s) | 508, 960 |
| PspFI | CCCAGC | 1 cut(s) | 933 |
| PspGI | CCWGG | 2 cut(s) | 508, 960 |
| PspPI | GGNCC | 2 cut(s) | 873, 942 |
| PsuI | RGATCY | 3 cut(s) | 123, 273, 541 |
| PvuII | CAGCTG | 1 cut(s) | 968 |
| RsaI | GTAC | 1 cut(s) | 721 |
| RsaNI | GTAC | 1 cut(s) | 720 |
| RseI | CAYNNNNRTG | 3 cut(s) | 438, 586, 917 |
| SapI | GCTCTTC | 1 cut(s) | 765 |
| SaqAI | TTAA | 6 cut(s) | 27, 254, 357, 521, 837, 908 |
| SatI | GCNGC | 3 cut(s) | 38, 881, 966 |
| Sau3AI | GATC | 4 cut(s) | 123, 273, 541, 567 |
| Sau96I | GGNCC | 2 cut(s) | 873, 942 |
| SchI | GAGTC | 1 cut(s) | 554 |
| ScrFI | CCNGG | 3 cut(s) | 144, 510, 962 |
| SduI | GDGCHC | 1 cut(s) | 897 |
| SfaNI | GCATC | 1 cut(s) | 504 |
| SfcI | CTRYAG | 1 cut(s) | 165 |
| SinI | GGWCC | 1 cut(s) | 942 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 438, 586, 917 |
| SmlI | CTYRAG | 3 cut(s) | 258, 545, 723 |
| SmoI | CTYRAG | 3 cut(s) | 258, 545, 723 |
| StyD4I | CCNGG | 3 cut(s) | 142, 508, 960 |
| TaaI | ACNGT | 2 cut(s) | 169, 556 |
| TaqI | TCGA | 2 cut(s) | 208, 991 |
| TatI | WGTACW | 1 cut(s) | 719 |
| TfiI | GAWTC | 6 cut(s) | 86, 212, 330, 398, 496, 821 |
| Tru1I | TTAA | 6 cut(s) | 27, 254, 357, 521, 837, 908 |
| Tru9I | TTAA | 6 cut(s) | 27, 254, 357, 521, 837, 908 |
| TscAI | CASTG | 3 cut(s) | 88, 99, 483 |
| TseI | GCWGC | 3 cut(s) | 37, 880, 965 |
| TspDTI | ATGAA | 2 cut(s) | 398, 422 |
| TspGWI | ACGGA | 1 cut(s) | 833 |
| TspRI | CASTG | 3 cut(s) | 88, 99, 483 |
| VpaK11BI | GGWCC | 1 cut(s) | 942 |
| VspI | ATTAAT | 1 cut(s) | 27 |
| XapI | RAATTY | 2 cut(s) | 241, 405 |
| XceI | RCATGY | 1 cut(s) | 844 |
| XmnI | GAANNNNTTC | 1 cut(s) | 28 |