ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 37 - 119 | 2.8e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 490, 589 |
| Acc36I | ACCTGC | 2 cut(s) | 490, 589 |
| AccII | CGCG | 1 cut(s) | 532 |
| AciI | CCGC | 4 cut(s) | 10, 191, 269, 393 |
| AcuI | CTGAAG | 1 cut(s) | 81 |
| AfaI | GTAC | 1 cut(s) | 441 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 28, 29, 268, 356 |
| AflIII | ACRYGT | 2 cut(s) | 442, 530 |
| AgsI | TTSAA | 5 cut(s) | 230, 280, 287, 302, 333 |
| AluBI | AGCT | 6 cut(s) | 65, 122, 283, 321, 460, 567 |
| AluI | AGCT | 6 cut(s) | 65, 122, 283, 321, 460, 567 |
| Alw21I | GWGCWC | 1 cut(s) | 563 |
| Alw26I | GTCTC | 1 cut(s) | 263 |
| ApeKI | GCWGC | 1 cut(s) | 321 |
| AspLEI | GCGC | 1 cut(s) | 499 |
| AsuC2I | CCSGG | 1 cut(s) | 516 |
| AsuHPI | GGTGA | 3 cut(s) | 175, 245, 514 |
| Bbv12I | GWGCWC | 1 cut(s) | 563 |
| BbvI | GCAGC | 1 cut(s) | 308 |
| BccI | CCATC | 2 cut(s) | 241, 472 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BcnI | CCSGG | 1 cut(s) | 516 |
| BcoDI | GTCTC | 1 cut(s) | 263 |
| BfuAI | ACCTGC | 2 cut(s) | 490, 589 |
| BglII | AGATCT | 1 cut(s) | 428 |
| BisI | GCNGC | 3 cut(s) | 270, 322, 394 |
| BlsI | GCNGC | 3 cut(s) | 271, 323, 395 |
| Bme1390I | CCNGG | 1 cut(s) | 516 |
| BmiI | GGNNCC | 1 cut(s) | 212 |
| BmrFI | CCNGG | 1 cut(s) | 516 |
| BmsI | GCATC | 3 cut(s) | 118, 232, 440 |
| BpuEI | CTTGAG | 1 cut(s) | 547 |
| BpuMI | CCSGG | 1 cut(s) | 516 |
| BsaI | GGTCTC | 1 cut(s) | 263 |
| BsaJI | CCNNGG | 3 cut(s) | 37, 308, 515 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 28, 29, 268, 356 |
| Bse3DI | GCAATG | 1 cut(s) | 19 |
| BseDI | CCNNGG | 3 cut(s) | 37, 308, 515 |
| BseGI | GGATG | 2 cut(s) | 133, 294 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 28, 29, 268, 356 |
| BseMI | GCAATG | 1 cut(s) | 19 |
| BseMII | CTCAG | 3 cut(s) | 234, 329, 423 |
| BseXI | GCAGC | 1 cut(s) | 308 |
| Bsh1236I | CGCG | 1 cut(s) | 532 |
| BsiHKAI | GWGCWC | 1 cut(s) | 563 |
| BsiSI | CCGG | 1 cut(s) | 515 |
| BslFI | GGGAC | 1 cut(s) | 55 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 28, 29, 268, 356 |
| BsmAI | GTCTC | 1 cut(s) | 263 |
| BsmFI | GGGAC | 1 cut(s) | 55 |
| BsmI | GAATGC | 2 cut(s) | 328, 366 |
| Bso31I | GGTCTC | 1 cut(s) | 263 |
| Bsp1286I | GDGCHC | 1 cut(s) | 563 |
| Bsp1407I | TGTACA | 1 cut(s) | 439 |
| Bsp143I | GATC | 3 cut(s) | 3, 46, 428 |
| Bsp19I | CCATGG | 1 cut(s) | 308 |
| BspACI | CCGC | 4 cut(s) | 10, 191, 269, 393 |
| BspCNI | CTCAG | 3 cut(s) | 233, 328, 424 |
| BspFNI | CGCG | 1 cut(s) | 532 |
| BspLI | GGNNCC | 1 cut(s) | 212 |
| BspMI | ACCTGC | 2 cut(s) | 490, 589 |
| BspTNI | GGTCTC | 1 cut(s) | 263 |
| BsrDI | GCAATG | 1 cut(s) | 19 |
| BsrGI | TGTACA | 1 cut(s) | 439 |
| BssECI | CCNNGG | 3 cut(s) | 37, 308, 515 |
| BssMI | GATC | 3 cut(s) | 3, 46, 428 |
| BssT1I | CCWWGG | 2 cut(s) | 37, 308 |
| Bst4CI | ACNGT | 2 cut(s) | 380, 555 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 370, 390 |
| BstAUI | TGTACA | 1 cut(s) | 439 |
| BstC8I | GCNNGC | 2 cut(s) | 199, 326 |
| BstDEI | CTNAG | 3 cut(s) | 220, 315, 432 |
| BstDSI | CCRYGG | 1 cut(s) | 308 |
| BstEII | GGTNACC | 1 cut(s) | 32 |
| BstF5I | GGATG | 2 cut(s) | 133, 294 |
| BstFNI | CGCG | 1 cut(s) | 532 |
| BstHHI | GCGC | 1 cut(s) | 499 |
| BstKTI | GATC | 3 cut(s) | 6, 49, 431 |
| BstMAI | GTCTC | 1 cut(s) | 263 |
| BstMBI | GATC | 3 cut(s) | 3, 46, 428 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 128, 370, 390 |
| BstNSI | RCATGY | 1 cut(s) | 446 |
| BstPI | GGTNACC | 1 cut(s) | 32 |
| BstSCI | CCNGG | 1 cut(s) | 514 |
| BstUI | CGCG | 1 cut(s) | 532 |
| BstV1I | GCAGC | 1 cut(s) | 308 |
| BstX2I | RGATCY | 1 cut(s) | 428 |
| BstYI | RGATCY | 1 cut(s) | 428 |
| BtgI | CCRYGG | 1 cut(s) | 308 |
| BtgZI | GCGATG | 3 cut(s) | 260, 411, 463 |
| BtsCI | GGATG | 2 cut(s) | 133, 294 |
| BtsIMutI | CAGTG | 1 cut(s) | 477 |
| BveI | ACCTGC | 2 cut(s) | 490, 589 |
| Cac8I | GCNNGC | 2 cut(s) | 199, 326 |
| CfoI | GCGC | 1 cut(s) | 499 |
| CseI | GACGC | 1 cut(s) | 538 |
| Csp6I | GTAC | 1 cut(s) | 440 |
| CviAII | CATG | 4 cut(s) | 206, 309, 418, 443 |
| CviQI | GTAC | 1 cut(s) | 440 |
| DdeI | CTNAG | 3 cut(s) | 220, 315, 432 |
| DpnI | GATC | 3 cut(s) | 5, 48, 430 |
| DpnII | GATC | 3 cut(s) | 3, 46, 428 |
| Eco130I | CCWWGG | 2 cut(s) | 37, 308 |
| Eco31I | GGTCTC | 1 cut(s) | 263 |
| Eco57I | CTGAAG | 1 cut(s) | 81 |
| Eco91I | GGTNACC | 1 cut(s) | 32 |
| EcoO65I | GGTNACC | 1 cut(s) | 32 |
| EcoT14I | CCWWGG | 2 cut(s) | 37, 308 |
| ErhI | CCWWGG | 2 cut(s) | 37, 308 |
| FaeI | CATG | 4 cut(s) | 209, 312, 421, 446 |
| FaiI | YATR | 7 cut(s) | 117, 164, 207, 310, 419, 444, 551 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 54, 86 |
| FaqI | GGGAC | 1 cut(s) | 55 |
| FatI | CATG | 4 cut(s) | 205, 308, 417, 442 |
| FauI | CCCGC | 1 cut(s) | 184 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| Fnu4HI | GCNGC | 3 cut(s) | 270, 322, 394 |
| FokI | GGATG | 2 cut(s) | 140, 281 |
| Fsp4HI | GCNGC | 3 cut(s) | 270, 322, 394 |
| GlaI | GCGC | 1 cut(s) | 498 |
| GluI | GCNGC | 3 cut(s) | 270, 322, 394 |
| HapII | CCGG | 1 cut(s) | 515 |
| HgaI | GACGC | 1 cut(s) | 538 |
| HhaI | GCGC | 1 cut(s) | 499 |
| Hin1II | CATG | 4 cut(s) | 209, 312, 421, 446 |
| Hin6I | GCGC | 1 cut(s) | 497 |
| HinP1I | GCGC | 1 cut(s) | 497 |
| HindIII | AAGCTT | 3 cut(s) | 281, 458, 565 |
| HinfI | GANTC | 3 cut(s) | 313, 475, 505 |
| HpaII | CCGG | 1 cut(s) | 515 |
| HphI | GGTGA | 3 cut(s) | 175, 245, 514 |
| Hpy166II | GTNNAC | 1 cut(s) | 440 |
| Hpy188I | TCNGA | 2 cut(s) | 318, 433 |
| Hpy188III | TCNNGA | 1 cut(s) | 350 |
| Hpy8I | GTNNAC | 1 cut(s) | 440 |
| HpyAV | CCTTC | 2 cut(s) | 96, 224 |
| HpyCH4III | ACNGT | 2 cut(s) | 380, 555 |
| HpyCH4V | TGCA | 7 cut(s) | 131, 197, 324, 364, 384, 538, 598 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 128, 370, 390 |
| HpyF3I | CTNAG | 3 cut(s) | 220, 315, 432 |
| Hsp92II | CATG | 4 cut(s) | 209, 312, 421, 446 |
| HspAI | GCGC | 1 cut(s) | 497 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 3 cut(s) | 3, 46, 428 |
| LmnI | GCTCC | 1 cut(s) | 119 |
| LpnPI | CCDG | 5 cut(s) | 72, 160, 485, 528, 584 |
| Lsp1109I | GCAGC | 1 cut(s) | 308 |
| LweI | GCATC | 3 cut(s) | 118, 232, 440 |
| MaeIII | GTNAC | 1 cut(s) | 32 |
| MalI | GATC | 3 cut(s) | 5, 48, 430 |
| MboI | GATC | 3 cut(s) | 3, 46, 428 |
| MfeI | CAATTG | 2 cut(s) | 24, 225 |
| MflI | RGATCY | 1 cut(s) | 428 |
| MhlI | GDGCHC | 1 cut(s) | 563 |
| MluCI | AATT | 4 cut(s) | 24, 73, 225, 263 |
| MluI | ACGCGT | 1 cut(s) | 530 |
| MlyI | GAGTC | 1 cut(s) | 307 |
| MnlI | CCTC | 4 cut(s) | 93, 415, 427, 519 |
| MseI | TTAA | 3 cut(s) | 72, 135, 252 |
| MspI | CCGG | 1 cut(s) | 515 |
| MspR9I | CCNGG | 1 cut(s) | 516 |
| MunI | CAATTG | 2 cut(s) | 24, 225 |
| Mva1269I | GAATGC | 2 cut(s) | 328, 366 |
| MvnI | CGCG | 1 cut(s) | 532 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 128, 370, 390 |
| NciI | CCSGG | 1 cut(s) | 516 |
| NcoI | CCATGG | 1 cut(s) | 308 |
| NdeII | GATC | 3 cut(s) | 3, 46, 428 |
| NlaIII | CATG | 4 cut(s) | 209, 312, 421, 446 |
| NlaIV | GGNNCC | 1 cut(s) | 212 |
| NspI | RCATGY | 1 cut(s) | 446 |
| PaqCI | CACCTGC | 2 cut(s) | 490, 589 |
| PciI | ACATGT | 1 cut(s) | 442 |
| PctI | GAATGC | 2 cut(s) | 328, 366 |
| PfeI | GAWTC | 2 cut(s) | 475, 505 |
| PkrI | GCNGC | 3 cut(s) | 271, 323, 395 |
| PleI | GAGTC | 1 cut(s) | 307 |
| PpsI | GAGTC | 1 cut(s) | 307 |
| PscI | ACATGT | 1 cut(s) | 442 |
| PspEI | GGTNACC | 1 cut(s) | 32 |
| PspN4I | GGNNCC | 1 cut(s) | 212 |
| PsuI | RGATCY | 1 cut(s) | 428 |
| RsaI | GTAC | 1 cut(s) | 441 |
| RsaNI | GTAC | 1 cut(s) | 440 |
| SaqAI | TTAA | 3 cut(s) | 72, 135, 252 |
| SatI | GCNGC | 3 cut(s) | 270, 322, 394 |
| Sau3AI | GATC | 3 cut(s) | 3, 46, 428 |
| SchI | GAGTC | 1 cut(s) | 307 |
| ScrFI | CCNGG | 1 cut(s) | 516 |
| SduI | GDGCHC | 1 cut(s) | 563 |
| SfaNI | GCATC | 3 cut(s) | 118, 232, 440 |
| SmlI | CTYRAG | 1 cut(s) | 562 |
| SmoI | CTYRAG | 1 cut(s) | 562 |
| Sse9I | AATT | 4 cut(s) | 24, 73, 225, 263 |
| SsiI | CCGC | 4 cut(s) | 10, 191, 269, 393 |
| StyD4I | CCNGG | 1 cut(s) | 514 |
| StyI | CCWWGG | 2 cut(s) | 37, 308 |
| TaaI | ACNGT | 2 cut(s) | 380, 555 |
| TasI | AATT | 4 cut(s) | 24, 73, 225, 263 |
| TatI | WGTACW | 1 cut(s) | 439 |
| TauI | GCSGC | 2 cut(s) | 272, 396 |
| TfiI | GAWTC | 2 cut(s) | 475, 505 |
| Tru1I | TTAA | 3 cut(s) | 72, 135, 252 |
| Tru9I | TTAA | 3 cut(s) | 72, 135, 252 |
| TscAI | CASTG | 1 cut(s) | 477 |
| TseI | GCWGC | 1 cut(s) | 321 |
| TspDTI | ATGAA | 1 cut(s) | 538 |
| TspRI | CASTG | 1 cut(s) | 477 |
| XceI | RCATGY | 1 cut(s) | 446 |