Rorug03G0077300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000093
Physical Location & Seq
Forward (+)
6024923 .. 6026361
1439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0077300.1

Sequence Viewer

Length: 591 bp
ATGGCGGCCTCGTTTGTCTCGAACCCCGACCCCTGTCTTGACTCGAGTCGCAAGAAACGTCGAAAAGTCGAGGATGATCGGAATCCGGCTTCAACTACTCAAGTGAGATGGAGATCCGATAAAGAGCAACGGATCTATTCAACTAAGCTGGTGGAGGCGCTACGGAGGGTTCGCCAGGGATCATCATCGTCGCCGGCAGCGGTCTCCGGGGGGAAAATCGTGAAGGAAGCAGCCGACAGGGTTCTGGCCGTGGCGGCGAAAGGTACGACTCGGTGGAGCAGAGCGATTCTGAGGAGTCGACTCAGGCTGAGCAAGAGGCTTCAGAAGTGTAGAAAGGCGAGGGTTACCGGGGATAGCCGGTGTAAGAGGGCGGACGTGAGGAGAGAGAGGAGGAGGACGCCGGCTGTGCAGAAGAAAGTTAAGCTTCTTAGCCAGTTGGTTCCCGGTTGCCGGAAGGCTCCGTTGCCGAACCTTCTAGAAGAAACGACCGATTACATAGCGGCGCTGGAGATGCAGGTTCGAGCTATGACGGTTCTGACGGAGCTTCTCTCCGGTGCTCCGGCGGCCAATCGTCTCAACCTTACCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

196

Amino Acids

21.92

Weight (kDa)

11.3

Isoelectric Point (pI)

64.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 41 - 100 1.1e-11 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 505
AccI GTMKAC 1 cut(s) 298
AciI CCGC 6 cut(s) 5, 200, 254, 371, 500, 563
AclWI GGATC 3 cut(s) 108, 140, 187
AcoI YGGCCR 2 cut(s) 246, 564
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 398
AfaI GTAC 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 450
AgsI TTSAA 2 cut(s) 93, 141
AjiI CACGTC 1 cut(s) 376
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 4 cut(s) 148, 424, 524, 544
AluI AGCT 4 cut(s) 148, 424, 524, 544
Alw21I GWGCWC 1 cut(s) 559
Alw26I GTCTC 3 cut(s) 22, 208, 578
AlwI GGATC 3 cut(s) 108, 140, 187
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 3 cut(s) 6, 246, 564
ApeKI GCWGC 2 cut(s) 197, 230
AspLEI GCGC 2 cut(s) 160, 505
AsuC2I CCSGG 3 cut(s) 208, 349, 444
AvaI CYCGRG 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 559
BbvI GCAGC 2 cut(s) 209, 242
BccI CCATC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 176
BcnI CCSGG 3 cut(s) 208, 349, 444
BcoDI GTCTC 3 cut(s) 22, 208, 578
BfaI CTAG 1 cut(s) 476
BfoI RGCGCY 2 cut(s) 161, 506
BfuAI ACCTGC 1 cut(s) 505
BglI GCCNNNNNGGC 1 cut(s) 254
BisI GCNGC 6 cut(s) 6, 198, 231, 255, 501, 564
BlpI GCTNAGC 1 cut(s) 308
BlsI GCNGC 6 cut(s) 7, 199, 232, 256, 502, 565
Bme1390I CCNGG 4 cut(s) 176, 208, 349, 444
BmeT110I CYCGRG 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 376
BmiI GGNNCC 2 cut(s) 441, 459
BmrFI CCNGG 4 cut(s) 176, 208, 349, 444
BmsI GCATC 1 cut(s) 501
BoxI GACNNNNGTC 2 cut(s) 33, 45
BplI GAGNNNNNCTC 2 cut(s) 533, 565
BpmI CTGGAG 1 cut(s) 527
Bpu1102I GCTNAGC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 84
BpuMI CCSGG 3 cut(s) 208, 349, 444
BsaBI GATNNNNATC 3 cut(s) 81, 112, 184
BsaHI GRCGYC 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 4 cut(s) 175, 207, 249, 348
BsaWI WCCGGW 1 cut(s) 551
Bsc4I CCNNNNNNNGG 1 cut(s) 450
Bse118I RCCGGY 3 cut(s) 193, 357, 400
Bse1I ACTGG 2 cut(s) 433, 585
Bse8I GATNNNNATC 3 cut(s) 81, 112, 184
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 4 cut(s) 175, 207, 249, 348
BseGI GGATG 1 cut(s) 79
BseJI GATNNNNATC 3 cut(s) 81, 112, 184
BseLI CCNNNNNNNGG 1 cut(s) 450
BseMII CTCAG 3 cut(s) 281, 299, 316
BseNI ACTGG 2 cut(s) 433, 585
BseRI GAGGAG 4 cut(s) 307, 394, 403, 406
BseXI GCAGC 2 cut(s) 209, 242
BsgI GTGCAG 1 cut(s) 428
Bsh1285I CGRYCG 1 cut(s) 489
BshFI GGCC 3 cut(s) 8, 248, 566
BsiEI CGRYCG 1 cut(s) 489
BsiHKAI GWGCWC 1 cut(s) 559
BsiHKCI CYCGRG 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 450
BsmAI GTCTC 3 cut(s) 22, 208, 578
BsmBI CGTCTC 1 cut(s) 578
BsnI GGCC 3 cut(s) 8, 248, 566
Bso31I GGTCTC 1 cut(s) 208
BsoBI CYCGRG 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 559
Bsp143I GATC 4 cut(s) 76, 113, 132, 179
Bsp1720I GCTNAGC 1 cut(s) 308
BspACI CCGC 6 cut(s) 5, 200, 254, 371, 500, 563
BspANI GGCC 3 cut(s) 8, 248, 566
BspCNI CTCAG 3 cut(s) 282, 300, 315
BspLI GGNNCC 2 cut(s) 441, 459
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 3 cut(s) 108, 140, 187
BspTNI GGTCTC 1 cut(s) 208
BsrFI RCCGGY 3 cut(s) 193, 357, 400
BsrI ACTGG 2 cut(s) 433, 585
BssAI RCCGGY 3 cut(s) 193, 357, 400
BssECI CCNNGG 4 cut(s) 175, 207, 249, 348
BssMI GATC 4 cut(s) 76, 113, 132, 179
BssNI GRCGYC 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 532
BstACI GRCGYC 1 cut(s) 398
BstC8I GCNNGC 2 cut(s) 195, 402
BstDEI CTNAG 5 cut(s) 144, 290, 302, 308, 428
BstDSI CCRYGG 1 cut(s) 249
BstEII GGTNACC 1 cut(s) 343
BstF5I GGATG 1 cut(s) 79
BstH2I RGCGCY 2 cut(s) 161, 506
BstHHI GCGC 2 cut(s) 160, 505
BstKTI GATC 4 cut(s) 79, 116, 135, 182
BstMAI GTCTC 3 cut(s) 22, 208, 578
BstMBI GATC 4 cut(s) 76, 113, 132, 179
BstMCI CGRYCG 1 cut(s) 489
BstMWI GCNNNNNNNGC 4 cut(s) 254, 406, 511, 563
BstNI CCWGG 1 cut(s) 176
BstPAI GACNNNNGTC 2 cut(s) 33, 45
BstPI GGTNACC 1 cut(s) 343
BstSCI CCNGG 4 cut(s) 174, 206, 347, 442
BstV1I GCAGC 2 cut(s) 209, 242
BstX2I RGATCY 2 cut(s) 113, 132
BstYI RGATCY 2 cut(s) 113, 132
BsuRI GGCC 3 cut(s) 8, 248, 566
BtgI CCRYGG 1 cut(s) 249
BtrI CACGTC 1 cut(s) 376
BtsCI GGATG 1 cut(s) 79
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 2 cut(s) 195, 402
CfoI GCGC 2 cut(s) 160, 505
Cfr10I RCCGGY 3 cut(s) 193, 357, 400
CseI GACGC 1 cut(s) 406
Csp6I GTAC 1 cut(s) 264
CviQI GTAC 1 cut(s) 264
DdeI CTNAG 5 cut(s) 144, 290, 302, 308, 428
DpnI GATC 4 cut(s) 78, 115, 134, 181
DpnII GATC 4 cut(s) 76, 113, 132, 179
EaeI YGGCCR 2 cut(s) 246, 564
EciI GGCGGA 1 cut(s) 386
Eco31I GGTCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 43
Eco91I GGTNACC 1 cut(s) 343
EcoO65I GGTNACC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 578
FaiI YATR 2 cut(s) 497, 527
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FblI GTMKAC 1 cut(s) 298
Fnu4HI GCNGC 6 cut(s) 6, 198, 231, 255, 501, 564
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 6 cut(s) 6, 198, 231, 255, 501, 564
FspBI CTAG 1 cut(s) 476
GlaI GCGC 2 cut(s) 159, 504
GluI GCNGC 6 cut(s) 6, 198, 231, 255, 501, 564
GsuI CTGGAG 1 cut(s) 527
HaeII RGCGCY 2 cut(s) 161, 506
HaeIII GGCC 3 cut(s) 8, 248, 566
HgaI GACGC 1 cut(s) 406
HhaI GCGC 2 cut(s) 160, 505
Hin1I GRCGYC 1 cut(s) 398
Hin6I GCGC 2 cut(s) 158, 503
HinP1I GCGC 2 cut(s) 158, 503
HincII GTYRAC 1 cut(s) 299
HindII GTYRAC 1 cut(s) 299
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 7 cut(s) 41, 46, 82, 268, 286, 295, 300
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 5 cut(s) 81, 118, 291, 324, 537
Hpy188III TCNNGA 4 cut(s) 19, 38, 220, 476
Hpy8I GTNNAC 1 cut(s) 299
Hpy99I CGWCG 2 cut(s) 63, 193
HpyAV CCTTC 3 cut(s) 217, 448, 482
HpyCH4III ACNGT 1 cut(s) 532
HpyCH4IV ACGT 2 cut(s) 58, 375
HpyCH4V TGCA 2 cut(s) 409, 514
HpyF10VI GCNNNNNNNGC 4 cut(s) 254, 406, 511, 563
HpyF3I CTNAG 5 cut(s) 144, 290, 302, 308, 428
HpySE526I ACGT 2 cut(s) 58, 375
Hsp92I GRCGYC 1 cut(s) 398
HspAI GCGC 2 cut(s) 158, 503
KroI GCCGGC 2 cut(s) 193, 400
KroNI GCCGGC 2 cut(s) 195, 402
Kzo9I GATC 4 cut(s) 76, 113, 132, 179
LmnI GCTCC 4 cut(s) 276, 463, 541, 562
Lsp1109I GCAGC 2 cut(s) 209, 242
LweI GCATC 1 cut(s) 501
MaeI CTAG 1 cut(s) 476
MaeII ACGT 2 cut(s) 58, 375
MaeIII GTNAC 1 cut(s) 343
MalI GATC 4 cut(s) 78, 115, 134, 181
MboI GATC 4 cut(s) 76, 113, 132, 179
MboII GAAGA 2 cut(s) 424, 491
MflI RGATCY 2 cut(s) 113, 132
MhlI GDGCHC 1 cut(s) 559
MlyI GAGTC 5 cut(s) 35, 55, 262, 294, 304
MroNI GCCGGC 2 cut(s) 193, 400
MseI TTAA 1 cut(s) 420
MspA1I CMGCKG 1 cut(s) 200
MspR9I CCNGG 4 cut(s) 176, 208, 349, 444
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 4 cut(s) 254, 406, 511, 563
NaeI GCCGGC 2 cut(s) 195, 402
NciI CCSGG 3 cut(s) 208, 349, 444
NdeII GATC 4 cut(s) 76, 113, 132, 179
NgoMIV GCCGGC 2 cut(s) 193, 400
NlaIV GGNNCC 2 cut(s) 441, 459
PaeR7I CTCGAG 1 cut(s) 43
PcsI WCGNNNNNNNCGW 2 cut(s) 17, 55
PdiI GCCGGC 2 cut(s) 195, 402
PfeI GAWTC 2 cut(s) 82, 286
PkrI GCNGC 6 cut(s) 7, 199, 232, 256, 502, 565
PleI GAGTC 5 cut(s) 35, 54, 262, 294, 303
PpsI GAGTC 5 cut(s) 35, 54, 262, 294, 303
PshAI GACNNNNGTC 2 cut(s) 33, 45
Psp6I CCWGG 1 cut(s) 174
PspEI GGTNACC 1 cut(s) 343
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 441, 459
PspXI VCTCGAGB 1 cut(s) 43
PsuI RGATCY 2 cut(s) 113, 132
RsaI GTAC 1 cut(s) 265
RsaNI GTAC 1 cut(s) 264
SalI GTCGAC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 6 cut(s) 6, 198, 231, 255, 501, 564
Sau3AI GATC 4 cut(s) 76, 113, 132, 179
SchI GAGTC 5 cut(s) 35, 55, 262, 294, 304
ScrFI CCNGG 4 cut(s) 176, 208, 349, 444
SduI GDGCHC 1 cut(s) 559
SfaNI GCATC 1 cut(s) 501
Sfr274I CTCGAG 1 cut(s) 43
SlaI CTCGAG 1 cut(s) 43
SmlI CTYRAG 2 cut(s) 43, 99
SmoI CTYRAG 2 cut(s) 43, 99
SsiI CCGC 6 cut(s) 5, 200, 254, 371, 500, 563
SspMI CTAG 1 cut(s) 476
StyD4I CCNGG 4 cut(s) 174, 206, 347, 442
TaaI ACNGT 1 cut(s) 532
TaiI ACGT 2 cut(s) 61, 378
TaqI TCGA 6 cut(s) 20, 44, 61, 69, 298, 520
TaqII GACCGA 1 cut(s) 503
TauI GCSGC 4 cut(s) 8, 257, 503, 566
TfiI GAWTC 2 cut(s) 82, 286
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseI GCWGC 2 cut(s) 197, 230
TspGWI ACGGA 4 cut(s) 145, 178, 450, 554
XbaI TCTAGA 1 cut(s) 475
XhoI CTCGAG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 298
XspI CTAG 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.