ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 55 - 177 | 4.2e-28 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 518 |
| AclWI | GGATC | 5 cut(s) | 181, 271, 476, 478, 491 |
| AcoI | YGGCCR | 1 cut(s) | 391 |
| AcsI | RAATTY | 2 cut(s) | 334, 417 |
| AgsI | TTSAA | 3 cut(s) | 290, 334, 451 |
| AjnI | CCWGG | 1 cut(s) | 393 |
| AluBI | AGCT | 4 cut(s) | 251, 293, 497, 526 |
| AluI | AGCT | 4 cut(s) | 251, 293, 497, 526 |
| Alw21I | GWGCWC | 2 cut(s) | 104, 385 |
| Alw26I | GTCTC | 2 cut(s) | 260, 317 |
| AlwI | GGATC | 5 cut(s) | 181, 271, 476, 478, 491 |
| AoxI | GGCC | 2 cut(s) | 232, 391 |
| ApeKI | GCWGC | 2 cut(s) | 133, 515 |
| ApoI | RAATTY | 2 cut(s) | 334, 417 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 455 |
| AspA2I | CCTAGG | 1 cut(s) | 241 |
| AspS9I | GGNCC | 1 cut(s) | 232 |
| AsuHPI | GGTGA | 5 cut(s) | 40, 71, 385, 414, 451 |
| AsuNHI | GCTAGC | 1 cut(s) | 526 |
| AvrII | CCTAGG | 1 cut(s) | 241 |
| BamHI | GGATCC | 1 cut(s) | 483 |
| Bbv12I | GWGCWC | 2 cut(s) | 104, 385 |
| BbvI | GCAGC | 2 cut(s) | 145, 527 |
| BccI | CCATC | 2 cut(s) | 164, 313 |
| BceAI | ACGGC | 1 cut(s) | 406 |
| BciT130I | CCWGG | 1 cut(s) | 395 |
| BcoDI | GTCTC | 2 cut(s) | 260, 317 |
| BfaI | CTAG | 5 cut(s) | 189, 242, 252, 527, 550 |
| BisI | GCNGC | 3 cut(s) | 134, 516, 519 |
| BlnI | CCTAGG | 1 cut(s) | 241 |
| BlsI | GCNGC | 3 cut(s) | 135, 517, 520 |
| Bme1390I | CCNGG | 1 cut(s) | 395 |
| BmgT120I | GGNCC | 1 cut(s) | 232 |
| BmiI | GGNNCC | 3 cut(s) | 224, 233, 485 |
| BmrFI | CCNGG | 1 cut(s) | 395 |
| BmsI | GCATC | 2 cut(s) | 417, 502 |
| BmtI | GCTAGC | 1 cut(s) | 530 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 240, 272 |
| BpmI | CTGGAG | 1 cut(s) | 299 |
| Bpu10I | CCTNAGC | 1 cut(s) | 294 |
| BpuEI | CTTGAG | 2 cut(s) | 64, 416 |
| BsaI | GGTCTC | 1 cut(s) | 317 |
| BsaJI | CCNNGG | 2 cut(s) | 241, 259 |
| Bse3DI | GCAATG | 1 cut(s) | 141 |
| BseBI | CCWGG | 1 cut(s) | 395 |
| BseDI | CCNNGG | 2 cut(s) | 241, 259 |
| BseGI | GGATG | 3 cut(s) | 175, 187, 540 |
| BseMI | GCAATG | 1 cut(s) | 141 |
| BseMII | CTCAG | 1 cut(s) | 288 |
| BseXI | GCAGC | 2 cut(s) | 145, 527 |
| BshFI | GGCC | 2 cut(s) | 234, 393 |
| BsiHKAI | GWGCWC | 2 cut(s) | 104, 385 |
| BsmAI | GTCTC | 2 cut(s) | 260, 317 |
| BsnI | GGCC | 2 cut(s) | 234, 393 |
| Bso31I | GGTCTC | 1 cut(s) | 317 |
| Bsp1286I | GDGCHC | 2 cut(s) | 104, 385 |
| Bsp143I | GATC | 4 cut(s) | 173, 263, 468, 483 |
| Bsp19I | CCATGG | 1 cut(s) | 259 |
| BspACI | CCGC | 1 cut(s) | 518 |
| BspANI | GGCC | 2 cut(s) | 234, 393 |
| BspCNI | CTCAG | 1 cut(s) | 287 |
| BspLI | GGNNCC | 3 cut(s) | 224, 233, 485 |
| BspOI | GCTAGC | 1 cut(s) | 530 |
| BspPI | GGATC | 5 cut(s) | 181, 271, 476, 478, 491 |
| BspTNI | GGTCTC | 1 cut(s) | 317 |
| BsrDI | GCAATG | 1 cut(s) | 141 |
| BssECI | CCNNGG | 2 cut(s) | 241, 259 |
| BssMI | GATC | 4 cut(s) | 173, 263, 468, 483 |
| BssT1I | CCWWGG | 2 cut(s) | 241, 259 |
| Bst2UI | CCWGG | 1 cut(s) | 395 |
| Bst4CI | ACNGT | 1 cut(s) | 503 |
| BstC8I | GCNNGC | 1 cut(s) | 528 |
| BstDEI | CTNAG | 2 cut(s) | 274, 294 |
| BstDSI | CCRYGG | 1 cut(s) | 259 |
| BstF5I | GGATG | 3 cut(s) | 175, 187, 540 |
| BstKTI | GATC | 4 cut(s) | 176, 266, 471, 486 |
| BstMAI | GTCTC | 2 cut(s) | 260, 317 |
| BstMBI | GATC | 4 cut(s) | 173, 263, 468, 483 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 515, 527 |
| BstNI | CCWGG | 1 cut(s) | 395 |
| BstSCI | CCNGG | 1 cut(s) | 393 |
| BstV1I | GCAGC | 2 cut(s) | 145, 527 |
| BstX2I | RGATCY | 2 cut(s) | 263, 483 |
| BstYI | RGATCY | 2 cut(s) | 263, 483 |
| BsuRI | GGCC | 2 cut(s) | 234, 393 |
| BtgI | CCRYGG | 1 cut(s) | 259 |
| BtsCI | GGATG | 3 cut(s) | 175, 187, 540 |
| BtsI | GCAGTG | 2 cut(s) | 102, 285 |
| BtsIMutI | CAGTG | 2 cut(s) | 102, 285 |
| Cac8I | GCNNGC | 1 cut(s) | 528 |
| Cfr13I | GGNCC | 1 cut(s) | 232 |
| CviAII | CATG | 1 cut(s) | 260 |
| CviJI | RGCY | 9 cut(s) | 92, 136, 188, 234, 251, 293, 393, 497, 526 |
| CviKI_1 | RGCY | 9 cut(s) | 92, 136, 188, 234, 251, 293, 393, 497, 526 |
| DdeI | CTNAG | 2 cut(s) | 274, 294 |
| DpnI | GATC | 4 cut(s) | 175, 265, 470, 485 |
| DpnII | GATC | 4 cut(s) | 173, 263, 468, 483 |
| EaeI | YGGCCR | 1 cut(s) | 391 |
| Eco130I | CCWWGG | 2 cut(s) | 241, 259 |
| Eco31I | GGTCTC | 1 cut(s) | 317 |
| EcoRII | CCWGG | 1 cut(s) | 393 |
| EcoT14I | CCWWGG | 2 cut(s) | 241, 259 |
| ErhI | CCWWGG | 2 cut(s) | 241, 259 |
| FaeI | CATG | 1 cut(s) | 263 |
| FaiI | YATR | 6 cut(s) | 44, 195, 228, 261, 270, 341 |
| FatI | CATG | 1 cut(s) | 259 |
| Fnu4HI | GCNGC | 3 cut(s) | 134, 516, 519 |
| FokI | GGATG | 3 cut(s) | 182, 194, 547 |
| Fsp4HI | GCNGC | 3 cut(s) | 134, 516, 519 |
| FspBI | CTAG | 5 cut(s) | 189, 242, 252, 527, 550 |
| GluI | GCNGC | 3 cut(s) | 134, 516, 519 |
| GsuI | CTGGAG | 1 cut(s) | 299 |
| HaeIII | GGCC | 2 cut(s) | 234, 393 |
| Hin1II | CATG | 1 cut(s) | 263 |
| HinfI | GANTC | 3 cut(s) | 210, 376, 442 |
| HphI | GGTGA | 5 cut(s) | 40, 71, 385, 414, 451 |
| Hpy166II | GTNNAC | 1 cut(s) | 76 |
| Hpy188I | TCNGA | 1 cut(s) | 408 |
| Hpy188III | TCNNGA | 7 cut(s) | 81, 220, 316, 331, 353, 386, 433 |
| Hpy8I | GTNNAC | 1 cut(s) | 76 |
| HpyAV | CCTTC | 2 cut(s) | 301, 430 |
| HpyCH4III | ACNGT | 1 cut(s) | 503 |
| HpyCH4V | TGCA | 2 cut(s) | 509, 515 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 515, 527 |
| HpyF3I | CTNAG | 2 cut(s) | 274, 294 |
| Hsp92II | CATG | 1 cut(s) | 263 |
| Kzo9I | GATC | 4 cut(s) | 173, 263, 468, 483 |
| LmnI | GCTCC | 1 cut(s) | 248 |
| LpnPI | CCDG | 8 cut(s) | 110, 115, 126, 205, 329, 353, 380, 407 |
| Lsp1109I | GCAGC | 2 cut(s) | 145, 527 |
| LweI | GCATC | 2 cut(s) | 417, 502 |
| MaeI | CTAG | 5 cut(s) | 189, 242, 252, 527, 550 |
| MaeIII | GTNAC | 3 cut(s) | 5, 28, 439 |
| MalI | GATC | 4 cut(s) | 175, 265, 470, 485 |
| MboI | GATC | 4 cut(s) | 173, 263, 468, 483 |
| MboII | GAAGA | 1 cut(s) | 111 |
| MfeI | CAATTG | 1 cut(s) | 300 |
| MflI | RGATCY | 2 cut(s) | 263, 483 |
| MhlI | GDGCHC | 2 cut(s) | 104, 385 |
| MluCI | AATT | 5 cut(s) | 300, 334, 409, 417, 478 |
| MlyI | GAGTC | 2 cut(s) | 204, 436 |
| MnlI | CCTC | 2 cut(s) | 178, 531 |
| MroXI | GAANNNNTTC | 1 cut(s) | 455 |
| MslI | CAYNNNNRTG | 1 cut(s) | 198 |
| MspA1I | CMGCKG | 1 cut(s) | 518 |
| MspR9I | CCNGG | 1 cut(s) | 395 |
| MunI | CAATTG | 1 cut(s) | 300 |
| MvaI | CCWGG | 1 cut(s) | 395 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 515, 527 |
| NcoI | CCATGG | 1 cut(s) | 259 |
| NdeII | GATC | 4 cut(s) | 173, 263, 468, 483 |
| NheI | GCTAGC | 1 cut(s) | 526 |
| NlaIII | CATG | 1 cut(s) | 263 |
| NlaIV | GGNNCC | 3 cut(s) | 224, 233, 485 |
| NmuCI | GTSAC | 3 cut(s) | 5, 28, 439 |
| PdmI | GAANNNNTTC | 1 cut(s) | 455 |
| PfeI | GAWTC | 1 cut(s) | 376 |
| PkrI | GCNGC | 3 cut(s) | 135, 517, 520 |
| PleI | GAGTC | 2 cut(s) | 204, 436 |
| PpsI | GAGTC | 2 cut(s) | 204, 436 |
| Psp6I | CCWGG | 1 cut(s) | 393 |
| PspGI | CCWGG | 1 cut(s) | 393 |
| PspN4I | GGNNCC | 3 cut(s) | 224, 233, 485 |
| PspPI | GGNCC | 1 cut(s) | 232 |
| PsuI | RGATCY | 2 cut(s) | 263, 483 |
| RseI | CAYNNNNRTG | 1 cut(s) | 198 |
| SatI | GCNGC | 3 cut(s) | 134, 516, 519 |
| Sau3AI | GATC | 4 cut(s) | 173, 263, 468, 483 |
| Sau96I | GGNCC | 1 cut(s) | 232 |
| SchI | GAGTC | 2 cut(s) | 204, 436 |
| ScrFI | CCNGG | 1 cut(s) | 395 |
| SduI | GDGCHC | 2 cut(s) | 104, 385 |
| SetI | ASST | 7 cut(s) | 247, 253, 295, 441, 499, 528, 542 |
| SfaNI | GCATC | 2 cut(s) | 417, 502 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 198 |
| SmlI | CTYRAG | 2 cut(s) | 79, 431 |
| SmoI | CTYRAG | 2 cut(s) | 79, 431 |
| Sse9I | AATT | 5 cut(s) | 300, 334, 409, 417, 478 |
| SsiI | CCGC | 1 cut(s) | 518 |
| SspMI | CTAG | 5 cut(s) | 189, 242, 252, 527, 550 |
| StyD4I | CCNGG | 1 cut(s) | 393 |
| StyI | CCWWGG | 2 cut(s) | 241, 259 |
| TaaI | ACNGT | 1 cut(s) | 503 |
| TaqI | TCGA | 1 cut(s) | 354 |
| TasI | AATT | 5 cut(s) | 300, 334, 409, 417, 478 |
| TauI | GCSGC | 1 cut(s) | 521 |
| TfiI | GAWTC | 1 cut(s) | 376 |
| TscAI | CASTG | 2 cut(s) | 109, 285 |
| TseFI | GTSAC | 3 cut(s) | 5, 28, 439 |
| TseI | GCWGC | 2 cut(s) | 133, 515 |
| Tsp45I | GTSAC | 3 cut(s) | 5, 28, 439 |
| TspDTI | ATGAA | 2 cut(s) | 84, 328 |
| TspRI | CASTG | 2 cut(s) | 109, 285 |
| XapI | RAATTY | 2 cut(s) | 334, 417 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 242 |
| XmaJI | CCTAGG | 1 cut(s) | 241 |
| XmnI | GAANNNNTTC | 1 cut(s) | 455 |
| XspI | CTAG | 5 cut(s) | 189, 242, 252, 527, 550 |